@TOME V2.3
(Nov 2016)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : gbs0469: (2015-12-01 )
MIDFLLLKSLHSLLGLTITVCDQNFSVIREYKSEKTISLFYNHYLILSNFSKTQHDFLFHYGSLGELFLVHHIQQYYIIIGPWRSNVIDPLLLKKKLTETQINASEQNYFIDRLSQLPFFSLSQIRELLIVTNYCLTGVVKDKLSEPLHYYTKGWSNSFDLDKIKQFSKQNMSSYKYQYHFENNILKAVKSGSEFLLKETVEQFSNSIVPIISGDELRSEKNYSIMIYDRLSQATIQAGLDIETAYRARDRFIKENESTISLNEVLKLRDTAILFYTQQVHSLKKHLETPHSQTIVAVIRYLENNLNRFIKTEEIAKECHMSESKLRKLFKQEKHITIQQYFLNLKIEAAKQLLDENKKVEEVSNLLGFSTSSNFSRTFKKIVGISPLEYKQKPKTI
Atome Classification :
(20 SA)
.........10........20........30........40........50........60........70........80-........90........100.......110.-......120...--....130.......140.......150.......160.......170.......180.......190.......200....-----..---.210.....-..220.......230.......240.......250.......260......----------.270.......280...----....290.......300....-..-.310.......320.......330......-.340.......350...---.-.---..-.-360....---...370.......380........390.....--------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
M
I
D
F
L
L
L
K
S
L
H
S
L
L
G
L
T
I
T
V
CDQ
N
F
S
V
I
R
E
Y
KSE
K
T
I
S
L
FYN
H
Y
L
I
LSNFSKTQH
D
F
L
F
HYGS
L
G
E
L
F
L
V
H
H
I
Q
Q
Y
Y
I
I
I
G-PWRSNVI
D
P
L
L
L
K
K
KL
T
E
TQINA
S
E
Q
N
Y
F
I
D
R
-
L
S
QLPF
F
S
L
S
Q
I
--
R
E
L
L
I
V
T
N
Y
C
L
T
G
V
V
K
D
K
LSE
P
L
H
Y
Y
TKGWSNSF
D
L
D
K
I
K
Q
F
S
K
QNMSS
Y
K
Y
Q
Y
H
FEN
N
I
L
K
A
V
KSG
S
E
F
L
L
K
E
T
V
E
Q
FSN-----SI---
V
P
I
ISGDEL-RSEKN
Y
S
I
M
I
Y
DRLS
Q
A
T
I
QAGLD
I
E
T
A
Y
R
A
R
D
R
F
IKENESTI
S
L
N
E
V
L
K
L----------RD
T
A
I
L
F
Y
T
Q
Q
V
H
S
L
K
K
----
H
LETPH
S
Q
T
I
V
A
V
I
R
Y
L
E
N
N
L
-
N
R
-
F
I
K
T
E
E
I
A
K
E
CHM
S
E
S
K
L
R
K
L
F
K
QEK
H
I
T
I
-
Q
Q
Y
F
L
N
L
K
I
E
A
A
K
-
Q
L
L
---D-E---N
K
-
K
-
V
E
E
V
S
N
L
---LGFSTSS
N
F
S
R
T
F
K
K
-
I
VGISPLEYKQKPKTI--------
47
Fugue
84.80
14%
-42
* C3 *
4FE7
1
XYLR_ECOLI
A:
[21-409]
--
M
F
T
K
R
H
R
I
T
L
L
F
N
A
N
K
A
Y
D
R
Q
V
V
E
G
V
G
E
Y
L
Q
A
S
Q
S
E
--
W
D
I
F
I
E
E
F
R
W
L
G
D
G
V
I
A
D
F
D
D
K
Q
I
E
Q
A
L
--
A
D
V
D
V
P
I
V
G
V
G
G
S
Y
H
L
A
E
S
Y
P
P
V
H
Y
I
A
T
D
N
Y
A
L
V
E
S
A
F
L
H
L
K
E
K
G
V
N
R
F
A
F
Y
G
L
P
E
S
SG
K
R
W
A
T
E
R
E
Y
A
F
R
Q
L
V
A
E
E
-
K
Y
R
G
V
V
Y
Q
G
L
E
T
A
P
E
N
W
Q
H
A
Q
N
R
L
A
D
W
L
Q
T
L
P
-----
P
Q
T
G
I
I
A
V
T
D
A
R
A
R
H
I
L
Q
V
C
E
H
L
H
I
-----
P
V
PEK
L
C
V
I
G
I
D
N
E
-
E
L
T
R
Y
L
S
R
V
A
L
S
S
V
A
Q
G
A
R
Q
M
G
Y
Q
A
A
K
L
L
H
R
L
L
D
K
E
E
M
P
L
Q
R
I
L
V
P
P
V
R
V
I
----------
E
R
R
S
T
----------------
D
Y
R
S
L
T
D
P
A
V
I
Q
A
M
H
Y
I
R
N
H
A
-
C
K
-
G
I
K
V
D
Q
V
L
D
A
V
G
I
S
R
S
N
L
E
K
R
F
K
E
E
V
G
E
T
I
-
H
A
M
I
H
A
E
K
L
E
K
A
R
-
S
L
L
---
I
-
S
---
T
T
-
L
S
I
N
E
I
S
Q
M
---
C
G
Y
P
S
L
Q
Y
F
Y
S
V
F
K
K
-
A
Y
D
T
T
P
K
E
Y
R
D
V
N
S
E
---------
1
PsiBlast_PDB
72.69
29%
-81
- C2 -
3OIO
2
?
A:
[9-104]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
T
E
A
V
S
L
M
E
A
N
I
-
E
E
-
P
L
S
T
D
D
I
A
Y
Y
V
G
V
S
R
R
Q
L
E
R
L
F
K
Q
Y
L
G
T
V
P
-
S
K
Y
Y
L
E
L
R
L
N
R
A
R
-
Q
L
L
---
Q
-
Q
T--
S
K
-
S
-
I
V
Q
I
G
L
A
---
C
G
F
S
S
G
P
H
F
S
S
T
Y
R
N
-
H
F
N
I
T
P
R
E
E
R
A
Q
R
A
Q
P
--------
24
HHSearch
72.33
26%
-67
- C2 -
3OIO
2
?
A:
[4-110]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
S
Q
P
K
L
T
E
A
V
S
L
M
E
A
N
I
-
E
E
-
P
L
S
T
D
D
I
A
Y
Y
V
G
V
S
R
R
Q
L
E
R
L
F
K
Q
Y
L
G
T
V
P
-
S
K
Y
Y
L
E
L
R
L
N
R
A
R
-
Q
L
L
---
Q
Q
T
---
S
K
-
S
-
I
V
Q
I
G
L
A
---
C
G
F
S
S
G
P
H
F
S
S
T
Y
R
N
-
H
F
N
I
T
P
R
E
E
R
A
Q
R
A
Q
P
--------
27
HHSearch
71.60
27%
-44
- C2 -
2K9S
-
A:
[3-106]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
R
V
R
E
A
C
Q
Y
I
S
D
H
L
-
A
D
S
N
F
D
I
A
S
V
A
Q
H
V
C
L
S
P
S
R
L
S
H
L
F
R
Q
Q
L
G
I
S
V
-
L
S
W
R
E
D
Q
R
I
S
Q
A
K
-
L
L
L
---
S
T
T
---
R
M
-
P
-
I
A
T
V
G
R
N
---
V
G
F
D
D
Q
L
Y
F
S
R
V
F
K
K
-
C
T
G
A
S
P
S
E
F
R
A
G
C
E
----------
43
Fugue
70.49
24%
-41
- C2 -
1BL0
2
MARA_ECOLI
A:
[9-124]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
A
I
T
I
H
S
I
L
D
W
I
E
D
N
L
-
E
S
-
P
L
S
L
E
K
V
S
E
R
S
G
Y
S
K
W
H
L
Q
R
M
F
K
K
E
T
G
H
S
L
-
G
Q
Y
I
R
S
R
K
M
T
E
I
A
-
Q
K
L
---
K
-
E
S--
N
E
-
P
-
I
L
Y
L
A
E
R
---
Y
G
F
E
S
Q
Q
T
L
T
R
T
F
K
N
-
Y
F
D
V
P
P
H
K
Y
R
M
T
N
M
Q
G
ESRFLHPL
4
PsiBlast_PDB
70.47
28%
-64
- C2 -
4FE7
-
XYLR_ECOLI
A:
[306-404]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
V
I
Q
A
M
H
Y
I
R
N
H
A
-
C
K
-
G
I
K
V
D
Q
V
L
D
A
V
G
I
S
R
S
N
L
E
K
R
F
K
E
E
V
G
E
T
I
-
H
A
M
I
H
A
E
K
L
E
K
A
R
-
S
L
L
I
--
S
-
T
---
T
L
-
S
-
I
N
E
I
S
Q
M
---
C
G
Y
P
S
L
Q
Y
F
Y
S
V
F
K
K
-
A
Y
D
T
T
P
K
E
Y
R
D
V
N
S
E
---------
23
HHSearch
70.42
21%
-39
- C2 -
3W6V
2
?
A:
[37-141]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
D
P
L
A
E
V
V
A
W
A
L
E
H
L
-
H
E
-
Q
F
D
V
E
T
L
A
A
R
A
Y
M
S
R
R
T
F
D
R
R
F
R
S
L
T
G
S
A
P
-
L
Q
W
L
I
T
Q
R
V
L
Q
A
Q
-
R
L
L
---
E
T
S
---
D
Y
-
S
-
V
D
E
V
A
G
R
---
C
G
F
R
S
P
V
A
L
R
G
H
F
R
R
-
Q
L
G
S
S
P
A
A
Y
R
A
A
Y
R
A
R
--------
41
Fugue
68.39
22%
-58
- C2 -
3MN2
2
?
A:
[1-108]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
N
A
V
R
Q
V
E
E
Y
I
E
A
N
W
M
R
P
--
I
T
I
E
K
L
T
A
L
T
G
I
S
S
R
G
I
F
K
A
F
Q
R
S
R
G
Y
S
P
M
A
-
F
A
K
R
V
R
L
Q
H
A
H
-
N
L
L
S
DG
A
-
T
---
P
T
-
T
-
V
T
A
A
A
L
S
---
C
G
F
S
N
L
G
H
F
A
R
D
Y
R
D
M
F
-
G
E
K
P
S
E
T
L
Q
R
A
R
P
---------
7
PsiBlast_PDB
68.38
21%
-50
- C2 -
3W6V
2
?
A:
[37-133]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
D
P
L
A
E
V
V
A
W
A
L
E
H
L
-
H
E
-
Q
F
D
V
E
T
L
A
A
R
A
Y
M
S
R
R
T
F
D
R
R
F
R
S
L
T
G
S
A
P
-
L
Q
W
L
I
T
Q
R
V
L
Q
A
Q
-
R
L
L
---
E
-
T
---
S
D
Y
S
-
V
D
E
V
A
G
R
---
C
G
F
R
S
P
V
A
L
R
G
H
F
R
R
-
Q
L
G
S
S
P
A
A
Y
R
A
A
Y
R
A
R
--------
26
HHSearch
68.29
22%
-51
- C2 -
3MN2
2
?
A:
[2-107]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
A
V
R
Q
V
E
E
Y
I
E
A
N
W
-
M
R
-
P
I
T
I
E
K
L
T
A
L
T
G
I
S
S
R
G
I
F
K
A
F
Q
R
S
R
G
Y
S
P
-
M
A
F
A
K
R
V
R
L
Q
H
A
H
-
N
L
L
---
S
-
D
GAT
P
T
-
T
-
V
T
A
A
A
L
S
---
C
G
F
S
N
L
G
H
F
A
R
D
Y
R
D
-
M
F
G
E
K
P
S
E
T
L
Q
R
A
R
P
---------
25
HHSearch
66.96
21%
-40
- C2 -
3OOU
1
?
A:
[4-107]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
P
I
I
Q
N
V
L
S
Y
I
T
E
H
F
-
S
E
-
G
M
S
L
K
T
L
G
N
D
F
H
I
N
A
V
Y
L
G
Q
L
F
Q
K
E
M
G
E
H
F
-
T
D
Y
L
N
R
Y
R
V
N
Y
A
K
-
E
E
L
---
L
Q
T
---
K
D
-
N
-
L
T
I
I
A
G
K
---
S
G
Y
T
D
M
A
Y
F
Y
R
Q
F
K
K
-
H
T
G
E
T
P
N
R
Y
R
K
I
H
Q
----------
10
PsiBlast_PDB
66.96
22%
-50
- C2 -
3MN2
2
?
A:
[1-107]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
N
A
V
R
Q
V
E
E
Y
I
E
A
N
W
-
M
R
-
P
I
T
I
E
K
L
T
A
L
T
G
I
S
S
R
G
I
F
K
A
F
Q
R
S
R
G
Y
S
P
-
M
A
F
A
K
R
V
R
L
Q
H
A
H
-
N
L
L
---
S
-
D
---
G
A
-
T
-
P
T
T
V
T
A
A
A
L
S
C
G
F
S
N
L
G
H
F
A
R
D
Y
R
D
-
M
F
G
E
K
P
S
E
T
L
Q
R
A
R
P
---------
5
PsiBlast_PDB
65.64
28%
-38
- C2 -
4FE4
-
XYLR_ECOLI
A:
[286-384]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
V
I
Q
A
M
H
Y
I
R
N
H
A
-
C
K
-
G
I
K
V
D
Q
V
L
D
A
V
G
I
S
R
S
N
L
E
K
R
F
K
E
E
V
G
E
T
I
-
H
A
M
I
H
A
E
K
L
E
K
A
R
-
S
L
L
I
--
S
-
T
---
T
L
-
S
-
I
N
E
I
S
Q
M
---
C
G
Y
P
S
L
Q
Y
F
Y
S
V
F
K
K
-
A
Y
D
T
T
P
K
E
Y
R
D
V
N
S
E
---------
9
PsiBlast_PDB
65.56
22%
-38
- C2 -
3OOU
1
?
A:
[4-105]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
P
I
I
Q
N
V
L
S
Y
I
T
E
H
F
-
S
E
-
G
M
S
L
K
T
L
G
N
D
F
H
I
N
A
V
Y
L
G
Q
L
F
Q
K
E
M
G
E
H
F
-
T
D
Y
L
N
R
Y
R
V
N
Y
A
K
E
E
L
L
---
Q
-
T
---
K
D
-
N
-
L
T
I
I
A
G
K
---
S
G
Y
T
D
M
A
Y
F
Y
R
Q
F
K
K
-
H
T
G
E
T
P
N
R
Y
R
K
I
H
Q
----------
29
HHSearch
65.18
25%
-44
- C2 -
3LSG
1
?
A:
[2-103]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
A
K
E
L
I
Q
N
I
I
E
E
S
Y
T
D
S
-
Q
F
T
L
S
V
L
S
E
K
L
D
L
S
S
G
Y
L
S
I
M
F
K
K
N
F
G
I
P
F
-
Q
D
Y
L
L
Q
K
R
M
E
K
A
K
-
L
L
L
---
L
T
T
---
E
L
-
K
-
N
Y
E
I
A
E
Q
---
V
G
F
E
D
V
N
Y
F
I
T
K
F
K
K
-
Y
Y
Q
I
T
P
K
Q
Y
R
E
-------------
45
Fugue
64.54
11%
-19
- C2 -
3GBG
1
TCPN_VIBC3
A:
[4-273]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------
K
K
S
F
Q
T
N
V
Y
R
M
S
K
F
D
T
Y
I
F
N
N
L
Y
I
N
D
Y
K
M
F
W
I
D
S
G
I
A
K
L
I
D
K
N
C
L
V
S
Y
E
I
N
SS
S
I
I
---
L
L
K
K
N
S
I
Q
R
F
S
L
T
S
L
S
D
E
N
I
N
V
S
V
I
T
I
S
D
S
F
I
R
S
L
K
S
Y
I
L
G
N
K
D
L
L
L
W
N
C
E
H
N
D
I
A
V
L
S
E
V
V
N
GFRE
I
N
Y
S
D
E
F
L
K
V
F
F
S
G
F
F
S
K
V
E
K
K
Y
NS
I
F
I
T
D
D
L
D
A
M
E
K
I
S
C
L
V
K
S
D
I
-
T
R
-
N
W
R
W
A
D
I
C
G
E
L
R
T
N
R
M
I
L
K
K
E
L
E
-
S
R
G
V
K
F
-
R
E
L
I
N
S
I
R
I
S
Y
S
I
-
S
L
M
---
K
-
T
---
G
E
F
K
-
I
K
Q
I
A
Y
Q
---
S
G
F
A
S
V
S
Y
F
S
T
V
F
K
S
-
T
M
N
V
A
P
S
E
Y
L
F
M
L
T
G
V
--------
6
PsiBlast_PDB
64.12
33%
-18
- C2 -
2K9S
-
A:
[26-103]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
A
Q
H
V
C
L
S
P
S
R
L
S
H
L
F
R
Q
Q
L
G
I
S
V
-
L
S
W
R
E
D
Q
R
I
S
Q
A
K
-
L
L
L
---
S
-
T
---
T
R
M
P
-
I
A
T
V
G
R
N
---
V
G
F
D
D
Q
L
Y
F
S
R
V
F
K
K
-
C
T
G
A
S
P
S
E
F
R
A
G
C
E
----------
30
HHSearch
63.65
21%
-40
* C2 *
1D5Y
2
ROB_ECOLI
A:
[3-105]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
I
I
R
D
L
L
I
W
L
E
G
H
L
-
D
Q
-
P
L
S
L
D
N
V
A
A
K
A
G
Y
S
K
W
H
L
Q
R
M
F
K
D
V
T
G
H
A
I
-
G
A
Y
I
R
A
R
R
L
S
K
S
A
-
V
A
L
---
R
L
T
---
A
R
-
P
-
I
L
D
I
A
L
Q
---
Y
R
F
D
S
Q
Q
T
F
T
R
A
F
K
K
-
Q
F
A
Q
T
P
A
L
Y
R
R
S
P
E
W
S
--------
21
HHSearch
63.63
18%
-51
- C2 -
3GBG
1
TCPN_VIBC3
A:
[165-272]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
D
D
L
D
A
M
E
K
I
S
C
L
V
K
S
D
I
-
T
R
-
N
W
R
W
A
D
I
C
G
E
L
R
T
N
R
M
I
L
K
K
E
L
E
-
S
R
G
V
K
F
-
R
E
L
I
N
S
I
R
I
S
Y
S
I
-
S
L
M
---
K
T
G
---
E
F
-
K
-
I
K
Q
I
A
Y
Q
---
S
G
F
A
S
V
S
Y
F
S
T
V
F
K
S
-
T
M
N
V
A
P
S
E
Y
L
F
M
L
T
G
V
--------
22
HHSearch
60.95
23%
-40
- C2 -
1BL0
2
MARA_ECOLI
A:
[9-114]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
A
I
T
I
H
S
I
L
D
W
I
E
D
N
L
-
E
S
-
P
L
S
L
E
K
V
S
E
R
S
G
Y
S
K
W
H
L
Q
R
M
F
K
K
E
T
G
H
S
L
-
G
Q
Y
I
R
S
R
K
M
T
E
I
A
-
Q
K
L
---
K
E
S
---
N
E
-
P
-
I
L
Y
L
A
E
R
---
Y
G
F
E
S
Q
Q
T
L
T
R
T
F
K
N
-
Y
F
D
V
P
P
H
K
Y
R
M
T
N
M
Q
G
--------