@TOME V2.3
(Nov 2016)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : gbs0851: (2015-12-03 )
MKKITTLILASSLLLVATTSVKADDNFEMPTRYVKMSEKSKAFYQRLQEKQRKAHTTVKTFNNSEIRHQLPLKQEKARNDIYNLGILISQESKGFIQRIDNAYSLENVSDIVNEAQALYKRNYDLFEKIKSTRDKVQVLLASHQDNTDLKNFYAELDDMYEHVYLNESRVEAINRNIQKYN
Atome Classification :
(20 SA)
-----------------------------------------------------------------------------------------------------------.........10....--....20........30........40..--------......50........60........70........80....---....90--......-----------------------..100---------------......-.110.....--..120........130.--------...-...140.......150.......160-..-----......170.......180---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
-----------------------------------------------------------------------------------------------------------MK
K
I
T
T
L
I
L
A
S
S
L
L
L
--
V
A
T
T
SVKADDNFEMPT
R
Y
V
KM
S
E
K
S
K
A
F
--------
Y
Q
R
L
Q
E
K
Q
R
K
AH
T
T
V
K
TFNN
S
E
I
R
HQLPL
K
Q
E
K
ARNDI
Y
N
L
G
---
I
L
I
SQE--S
K
G
F
I
Q
-----------------------
R
IDNA---------------YS
L
E
N
V
-
S
D
I
V
N
E
A
Q
A
--
L
Y
KR-
N
Y
D
L
F
E
K
I
K
S
T
R
--------
D
K
V
-
Q
V
L
L
ASHQDNT
D
L
K
N
F
Y
A
E
L
D
D
M
Y
E
--
H
V
-----YL
N
E
S
R
V
E
A
I
N
R
N
IQKYN----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
26
Fugue
82.44
16%
-12
- C4 -
4KVM
11
NAT1_SCHPO
A:
[5-731]
QLS
P
K
E
I
T
L
F
R
T
A
L
K
C
Y
E
T
KQY
K
K
G
L
K
A
I
EPLLERHPEH
G
E
S
L
A
I
K
G
I
L
L
H
S
LGNT
K
E
G
Y
D
N
V
R
L
G
L
R
N
D
VGS
G
V
C
W
H
I
F
G
L
I
S
R
A
D
KD
Y
V
Q
A
A
K
C
Y
I
N
A
H
K
L
E
KNN
S
S
L
L
R
D
L
A
L
L
Q
S
Q
L
R
--
Q
Y
K
A
L
A
D
T
R
N
A
L
L
Q
D
N
P
G
V
R
A
N
W
S
A
L
A
V
--------
A
Q
F
L
R
G
E
Y
A
S
A
Y
K
I
V
D
A
F
E
S
T
I
N
Q
G
V
P
V
D
T
Q
E
E
S
E
A
M
L
F
M
N
L
---
V
I
L
K
K
D
----
G
V
E
D
-----------------------
A
Y
K
H
L
---------------
L
S
I
E
K
K
---
V
L
D
R
V
A
F
--
L
E
T
R
A
E
Y
E
L
Y
L
S
K
M
E
E
A
--------
K
S
T
-
I
Y
L
L
L
D
R
--
N
P
D
N
H
Q
Y
Y
Y
N
L
Q
R
A
Y
G
--
Y
E
DASGK
V
L
D
S
A
E
W
L
N
L
Y
S
Q
L
A
K
R
Y
PKSE
C
P
T
R
L
P
L
E
K
LEG
D
E
F
L
T
H
V
D
L
Y
L
R
K
K
L
K
R
GIPS
V
F
V
D
V
KSLYKDT
K
K
C
K
V
V
E
D
L
V
S
K
Y
A
S
S
L
S
TTNKFSEDDDNS
Q
I
E
I
P
T
T
L
L
W
T
Y
Y
F
L
A
Q
H
F
D
H
V
GE
L
E
K
A
E
K
Y
V
D
L
A
I
D
H
TPTL
V
E
L
F
M
T
K
A
R
I
S
K
H
K
GE
L
Q
T
A
M
E
I
M
D
H
A
R
K
L
D
LQD
R
F
I
N
G
K
C
A
K
Y
M
L
R
N
DE
N
E
L
A
A
K
T
V
SLFTRNEAVGG
A
V
G
D
L
A
D
M
QC
L
W
Y
M
L
E
D
G
K
S
F
A
R
Q
KK
F
A
L
A
L
K
R
F
S
T
V
F
K
I
F
D
T
W
A
D
DQFDFH
F
F
A
F
R
K
GS
L
R
T
Y
L
D
L
M
S
W
E
D
S
V
YDD
P
S
F
R
E
A
A
Q
G
S
I
E
I
Y
F
A
L
F
D
L
P
FAKYSPK
L
P
D
F
E
K
L
S
S
GEIN
E
E
E
E
K
K
I
Y
K
K
L
K
K
D
L
S
K
R
L
E
R
A
E
K
L
K
E
A
D
K
S
RKYDEDPLGENLVATSE
P
L
K
E
A
Q
K
C
L
E
K
L
L
P
Y
GDKNP
S
A
Y
I
L
A
A
Q
L
Y
T
R
L
KN
F
D
T
A
S
K
Y
L
E
Q
A
K
V
I
LGQND
P
T
V
I
S
T
E
K
F
Y
N
S
I
K
T
Q
S
N
AA
4
PsiBlast_PDB
77.93
33%
17
- C4 -
4BI8
-
?
A:
[29-93]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
Q
E
K
E
K
A
R
I
Y
L
L
G
---
V
L
D
A
T
E
--
G
K
S
W
C
Q
YS---------------------
Q
L
Q
T
V
---------------
T
L
Q
E
F
V
-
F
E
F
F
N
K
L
P
A
AR
L
H
E
R
-
A
A
P
L
I
E
E
A
L
A
T
R
--------
F
P
C
-
K
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
PsiBlast_PDB
75.94
33%
15
- C4 -
3ZFI
-
?
A:
[32-96]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
Q
E
K
E
K
A
R
I
Y
L
L
G
---
V
L
D
A
T
E
--
G
K
S
W
C
Q
YS---------------------
Q
L
Q
T
V
---------------
T
L
Q
E
F
V
-
F
E
F
F
N
K
L
P
A
AR
L
H
E
R
-
A
A
P
L
I
E
E
A
L
A
T
R
--------
F
P
C
-
K
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
74.58
24%
-24
- C4 -
3GG8
-
?
A:
[191-288]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
N
M
N
L
P
N
V
K
V
Q
L
P
V
I
G
E
K
D
K
H
D
I
L
N
F
G
---
I
P
M
G
C
N
FI
A
A
S
F
V
Q
S
A
D
D
V
R
Y
I
R
G
L
L
GPRGRH
I
R
I
I
P
K
I
E
N
V
---------------
E
G
L
V
N
F
-
D
E
I
L
A
E
A
D
G
--
I
M
I
A
-
R
G
D
L
G
M
E
I
P
P
E
K
--------
V
F
L
-
A
Q
K
M
M
I
A
K
C
N
V
V
G
K
P
V
I
T
A
T
Q
M
L
E
S
--
M
I
-----
K
N
P
R
P
T
R
A
E
A
A
D
V
A
N
A
V
L
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
PsiBlast_PDB
73.93
27%
-28
- C4 -
4BHD
-
GLYA_METJA
A:
[278-345]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
---------------
Y
A
K
Q
V
I
-
K
N
A
K
A
L
A
Q
A
--
L
Y
E
R
-
G
F
N
V
L
C
E
H
K
D
F
T
--------
E
S
H
-
Q
V
I
I
-
D
I
E
S
S
P
D
I
E
F
S
A
S
E
L
A
K
M
Y
E
E
A
N
I
-----
I
L
N
K
N
L
L
P
W
D
D
V
N
N
S
D
N
P
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
72.61
24%
-18
- C4 -
3EOE
-
?
A:
[191-288]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
N
M
N
L
P
N
V
K
V
Q
L
P
V
I
G
E
K
D
K
H
D
I
L
N
F
G
---
I
P
M
G
C
N
FI
A
A
S
F
V
Q
S
A
D
D
V
R
Y
I
R
G
L
L
GPRGRH
I
R
I
I
P
K
I
E
N
V
---------------
E
G
L
V
N
F
-
D
E
I
L
A
E
A
D
G
--
I
M
I
A
-
R
G
D
L
G
M
E
I
P
P
E
K
--------
V
F
L
-
A
Q
K
M
M
I
A
K
C
N
V
V
G
K
P
V
I
T
A
T
Q
M
L
E
S
--
M
I
-----
K
N
P
R
P
T
R
A
E
A
A
D
V
A
N
A
V
L
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
PsiBlast_PDB
71.81
27%
-26
- C4 -
4UQV
-
GLYA_METJA
A:
[279-346]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
---------------
Y
A
K
Q
V
I
-
K
N
A
K
A
L
A
Q
A
--
L
Y
E
R
-
G
F
N
V
L
C
E
H
K
D
F
T
--------
E
S
H
-
Q
V
I
I
-
D
I
E
S
S
P
D
I
E
F
S
A
S
E
L
A
K
M
Y
E
E
A
N
I
-----
I
L
N
K
N
L
L
P
W
D
D
V
N
N
S
D
N
P
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
13
PsiBlast_PDB
67.00
32%
-39
- C4 -
4JR7
1
CSK21_YEAST
A:
[138-180]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
F
D
I
I
K
D
P
I
--------
S
K
T
-
P
A
L
V
F
E
Y
V
D
N
V
D
F
R
I
L
Y
P
K
L
T
D
L
E
I
--
R
F
-----
Y
M
F
E
L
L
K
A
L
D
Y
C
H
S
M
G
I
M
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
15
PsiBlast_PDB
66.28
18%
36
- C4 -
2W7Y
1
?
A:
[330-428]
--------------------------------------------------------------------------------------------------------------------------------------------
K
Y
M
T
S
D
D
V
Q
K
V
I
--------
F
E
K
V
G
A
N
P
S
N
E
N
V
N
V
K
---------
E
L
S
E
K
S
S
E
A
T
T
K
I
L
G
Q
A
---
I
T
Q
V
K
N
--
A
K
A
V
V
P
-----------------------
T
V
S
D
V
---------------
W
G
G
D
V
H
-
T
A
I
I
N
A
L
T
E
--
S
A
A
E
-
N
V
D
V
D
Q
K
V
K
S
T
Q
--------
D
V
L
-
K
S
L
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
14
PsiBlast_PDB
64.69
32%
-45
- C4 -
4LFI
4
CSK21_YEAST
A:
[138-180]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
F
D
I
I
K
D
P
I
--------
S
K
T
-
P
A
L
V
F
E
Y
V
D
N
V
D
F
R
I
L
Y
P
K
L
T
D
L
E
I
--
R
F
-----
Y
M
F
E
L
L
K
A
L
D
Y
C
H
S
M
G
I
M
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
12
PsiBlast_PDB
64.68
32%
-48
- C4 -
4JQE
1
CSK21_YEAST
A:
[138-180]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
F
D
I
I
K
D
P
I
--------
S
K
T
-
P
A
L
V
F
E
Y
V
D
N
V
D
F
R
I
L
Y
P
K
L
T
D
L
E
I
--
R
F
-----
Y
M
F
E
L
L
K
A
L
D
Y
C
H
S
M
G
I
M
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10
PsiBlast_PDB
64.57
32%
-45
- C4 -
4FI1
2
CSK21_YEAST
A:
[138-180]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
F
D
I
I
K
D
P
I
--------
S
K
T
-
P
A
L
V
F
E
Y
V
D
N
V
D
F
R
I
L
Y
P
K
L
T
D
L
E
I
--
R
F
-----
Y
M
F
E
L
L
K
A
L
D
Y
C
H
S
M
G
I
M
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
PsiBlast_PDB
64.54
32%
-50
- C4 -
4MWH
2
CSK21_YEAST
A:
[138-180]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
F
D
I
I
K
D
P
I
--------
S
K
T
-
P
A
L
V
F
E
Y
V
D
N
V
D
F
R
I
L
Y
P
K
L
T
D
L
E
I
--
R
F
-----
Y
M
F
E
L
L
K
A
L
D
Y
C
H
S
M
G
I
M
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
27
Fugue
62.10
11%
8
- C4 -
3WUQ
-
A:
[3-265]
------------------------------------T
V
D
Q
V
E
E
L
R
R
D
L
R
I
K
S
Q
E
L
E
V
K
N
A
A
A
N
D
K
L
K
K
M
V
K
D
Q
Q
E
A
E
K
K
K
V
M
S
Q
E
I
Q
E
Q
L
H
K
Q
Q
E
V
I
A
D
K
Q
M
S
V
K
E
D
L
D
K
V
E
P
A
V
I
E
A
Q
N
A
V
K
S
I
K
K
Q
H
L
V
E
V
R
S
M
A
N
P
P
A
A
V
K
L
A
L
E
S
I
C
L
L
L
GESTTD
W
K
Q
I
R
S
I
I
M
R
E
N
F
I
P
T
I
V
N
F
S
A
E
E
I
S
D
A
I
R
E
K
M
K
K
N
Y
M
S
N
P
S
YN
Y
E
I
V
N
R
A
--
S
L
A
C
G
P
-----------------------
M
V
K
W
A
---------------
I
A
Q
L
N
Y
-
A
D
M
L
K
R
V
E
P
--
L
R
N
E
-
L
Q
K
L
E
D
D
A
K
D
N
Q
--------
Q
K
A
N
E
V
E
Q
M
I
R
D
L
E
A
S
I
A
R
Y
K
E
E
Y
A
V
L
I
S
--
E
A
-----
Q
A
I
K
A
D
L
A
A
V
E
A
K
V
N
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
21
HHSearch
61.95
29%
17
- C4 -
3IF8
-
ZWILC_HUMAN
A:
[1-57]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
W
-
E
R
L
N
C
A
A
E
D
--
F
Y
S
R
-
L
L
Q
K
F
N
E
E
K
K
G
I
RKDPFLYE
A
D
V
-
Q
V
Q
L
I
S
K
G
Q
P
N
P
L
K
N
I
L
N
E
N
D
I
V
F
I
--
V
E
-----
K
V
P
G
P
L
A
L
P
V
G
K
A
R
Q
L
I
G
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
30
Fugue
61.17
10%
28
- C4 -
3UX4
2
UREI_HELPJ
A:
[1-195]
-----------------------------------------------------------------------------------------------------------
M
L
G
L
V
L
L
Y
V
G
I
V
L
I
S
--
N
G
I
C
G
L
T
K
V
D
P
K
S
T
A
V
M
N
F
F
V
G
G
L
S
I
V
C
--------
N
V
V
V
I
T
Y
S
A
L
H
P
T
A
P
S
F
Y
G
P
A
T
G
L
L
F
G
F
T
Y
L
Y
A
A
I
N
H
T
F
G
L
D
---
W
R
P
Y
S
W
--
Y
S
L
F
V
A
-----------------------
I
N
T
V
P
---------------
A
A
I
L
S
H
Y
S
D
M
L
D
D
H
K
V
--
L
G
I
T
-
E
G
D
W
W
A
I
I
W
L
A
W
--------
G
V
L
-
W
L
T
A
F
I
E
N
I
L
K
I
P
L
G
K
F
T
P
W
L
A
I
I
E
--
G
I
-----
L
--
T
A
W
I
P
A
W
L
L
F
I
Q
H
W
V
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
PsiBlast_PDB
59.27
27%
-6
- C4 -
2QGI
-
YAT6_RHOBL
A:
[6-62]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Y
V
Q
-----------------------
D
K
D
E
S
---------------
T
L
M
F
S
V
-
C
S
L
V
R
D
-
Q
A
--
K
Y
D
R
-
L
L
E
S
F
E
R
F
G
F
T
P
--------
D
K
A
-
E
F
L
A
A
D
N
R
E
G
N
Q
F
H
G
F
S
W
H
K
Q
M
L
P
R
--
C
K
-----
G
R
Y
V
I
F
C
H
E
D
V
E
L
V
D
R
G
Y
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
PsiBlast_PDB
58.68
27%
-11
- C4 -
2NXV
-
YAT6_RHOBL
A:
[7-63]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Y
V
Q
-----------------------
D
K
D
E
S
---------------
T
L
M
F
S
V
-
C
S
L
V
R
D
-
Q
A
--
K
Y
D
R
-
L
L
E
S
F
E
R
F
G
F
T
P
--------
D
K
A
-
E
F
L
A
A
D
N
R
E
G
N
Q
F
H
G
F
S
W
H
K
Q
M
L
P
R
--
C
K
-----
G
R
Y
V
I
F
C
H
E
D
V
E
L
V
D
R
G
Y
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
20
HHSearch
58.08
27%
11
- C4 -
3O2T
-
SYMPK_HUMAN
A:
[21-68]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
---------------
T
T
S
E
R
V
-
V
D
L
L
N
Q
A
A
L
---
I
T
N
-
D
-
S
K
I
T
V
L
K
Q
V
Q
-------------
E
L
-
I
I
N
K
D
P
T
L
L
D
N
F
L
D
E
I
I
A
F
Q
A
--
D
K
-----
S
I
E
V
R
K
F
V
I
G
F
I
E
E
A
C
K
R
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
25
HHSearch
55.82
26%
-44
- C4 -
2LR2
-
?
A:
[29-82]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
L
H
L
P
---
N
L
N
E
E
Q
--
R
N
A
F
I
Q
-----------------------
S
L
K
D
D
SYIDTNNDGAYEGDE
L
S
G
S
Q
S
-
A
N
L
L
A
E
A
K
K
--
L
N
D
A
-
Q
A
P
K
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------