@TOME V2.3
(Nov 2016)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : gbs1001: (2015-12-04 )
MLYYFIYLIKVIGNGLKLSLICGLNWLIKIVFKGQFYLFSAVFCGLLTYYMPQDIQLFTVRVLELIIMLKVIIDVTHTALSRDFKRMKTPLFLGVMYVFFLAGNSYIKAHLLTEVMVNHLISFWLISLFFATLVIVIQPRLFKHYLLKKVIDKEYLGIRKFTDSLPPEINLYKDADEEDADKRMRLINQNVIKHPYQEVVELSFLNREVITAIGYKAVPFEKETERTFIDDDTIYYPIFTVHPFRNLEGKSDFYHILMKLKLSRKAAFTKNGERLLIRDF
Atome Classification :
(20 SA)
--------------------.........10......-------..20....----------.----...30........40.....--------------------------...50........60-...-----------......70........80......--..90...-----.....100.......110-..------.....-------120.......130.......140......------------.150..---.....---160..--.....170..-.....180...---....190....-...200.......210.......220......-------------------------.230---..---......240.......250------------------------.........260.......270.......280-------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
--------------------
M
L
Y
Y
F
I
Y
L
I
K
V
IGNG
L
K
-------
L
S
L
ICG
L
N
----------
W
----
L
I
K
I
VFKG
Q
F
Y
L
F
S
A
V
F
C
G
L
--------------------------
L
T
Y
YMPQD
I
Q
L
F
T
V
--
R
V
L
-----------
E
L
I
I
M
L
K
V
I
I
D
V
T
H
T
A
L
S
R
D
F
K
R
M--K
T
P
L
F
L
G
-----
V
M
Y
V
F
F
LAGN
S
Y
I
K
A
H
L
L
-
T
E
------
V
M
V
N
H
-------
L
I
S
F
W
L
I
S
L
F
F
A
T
L
V
I
V
I
Q
P
R
L
F
K
H
Y
L
L
K
------------
K
V
I
D
K
E
---
Y
L
G
I
R
---
K
F
T
DS--LPPE
I
N
L
YKD-ADEE
D
A
D
K
R
M
R
---
L
I
N
Q
N
V
I
K
H
P
Y
-
Q
E
V
V
E
L
S
F
L
N
R
E
V
I
T
A
IGYKAVPFEKETERTF-------------------------IDD----D
T
---
I
Y
Y
P
I
F
T
VHPFRNLEGK--------------------------
S
D
F
Y
H
I
L
M
K
L
KLSRKAAFTKNG
E
R
L
L
IRDF---------------------------
27
Fugue
74.65
22%
-66
- C3 -
4NZR
1
Y281_MYCGE
M:
[26-416]
NDGSYQSEIDLSGGANFREK
F
R
N
F
A
N
E
L
S
E
A
I
T
N
S
P
K
GLDRPVP
K
T
E
I
S
G
L
I
----------
K
TGDN
F
I
T
P
S
F
K
A
G
Y
Y
D
H
V
A
S
D
G
S
L
--------------------------
L
S
Y
Y
Q
S
T
--
E
Y
F
N
N
--
R
V
L
-----------
M
P
I
L
Q
T
T
---
N
G
T
L
M
A
N
N
R
G
Y
D
D
V
FR
Q
V
P
S
F
S
G
WSNTK
A
T
T
V
S
T
S
N
N
L
T
Y
D
K
W
T
Y
F
-
A
A
------
K
G
-
S
P
-------
L
Y
D
S
Y
P
N
H
F
F
E
D
V
K
T
L
A
I
D
A
K
D
I
S
A
--
L
K
------------
T
T
I
D
S
E
KPT
Y
L
I
I
R
---
G
L
S
G
N
--
G
S
Q
L
N
E
L
Q
L
P
-
E
S
V
K
K
V
S
L
Y
G
D
---
Y
T
G
V
N
V
A
K
Q
I
F
-
A
N
V
V
E
L
E
F
Y
S
T
S
K
A
N
S
F
G
F
N
P
L
V
L
G
S
K
T
N
V
I
Y
DLFASKPFTHIDLTQVTLQNSDNSA
I
D
A
----
N
K
---
L
K
Q
A
V
G
D
I
Y
N
Y
R
R
F
E
R
Q
FQGYFAGGYIDKYLVKNVNTNKDSDD
D
L
V
Y
R
S
L
K
E
L
N
L
H
L
E
E
A
Y
R
E
G
D
N
T
Y
Y
R
V
N
E
NYYPGASIYENERASRDSEFQNEILKR
28
Fugue
50.69
13%
-98
* C7 *
2HXW
1
?
A:
[2-232]
----------------------------------
D
V
N
-------
L
Y
G
P
G
G
P
-----------------------------
H
T
A
L
K
D
I
--------------------------
A
N
K
Y
S
E
K
T
G
V
K
V
N
V
--
N
F
------------------------------
G
P
Q
A
T
W
--
F
E
K
A
K
K
D
-----
A
D
I
L
F
G
A
S
D
Q
S
A
L
A
I
A
S
D
-
F
G
------
K
D
F
N
----------
V
S
K
I
K
P
L
Y
F
R
E
A
I
I
L
T
Q
K
G
N
P
L
K
I
K
G
L
------------
K
D
L
A
N
K
---
K
V
R
I
V
V
PE
G
A
G
K
S
--
N
T
S
G
T
G
V
W
E
D
M
I
G
R
T
Q
D
I
K
T
I
Q
---
N
F
R
N
N
I
V
A
F
V
P
-
N
S
G
S
A
L
F
-
A
Q
D
Q
A
D
A
W
I
T
W
I
D
W
S
K
S
N
P
D
I
G
T
A
-------------------------
V
A
I
----
E
K
DL
V
V
Y
R
T
F
N
V
I
A
K
E
G
A
S
K
E
T
--------------------------
Q
D
F
I
A
Y
L
S
S
--
K
E
A
K
E
I
F
K
K
Y
G
----
W
R
E
H
---------------------------
23
Fugue
49.35
11%
-88
- C6 -
1GU7
13
ETR1_CANTR
A:
[1-364]
--------------------
M
I
T
A
Q
A
V
L
Y
T
Q
H
G
E
P
K
D
-------
V
L
F
T
Q
S
F
E
I
D
DDNLAPN
E
V
----
I
V
K
T
L
G
S
P
V
N
P
S
D
I
N
Q
I
Q
G
V
YP
S
K
P
A
K
T
TGFGTT
E
P
A
A
P
C
G
N
E
G
L
F
E
V
I
K
V
G
S
N
V
S
S
L
E
A
G
D
W
V
I
P
SHVNFGTWRT
H
A
L
G
N
D
D
D
F
I
K
L
P
N
P
A
Q
S
K
A
N
G
K
P
--
N
G
L
T
I
N
Q
-----
G
A
T
I
S
V
N
P
L
T
A
Y
L
M
L
T
H
Y
-
V
K
L
T
P
G
K
D
W
F
I
Q
N
GGTS
A
V
G
K
Y
A
S
Q
I
G
K
L
L
N
F
N
S
I
S
V
I
R
D
R
P
N
L
D
E
V
V
A
------------
S
L
K
E
L
G
---
A
T
Q
V
I
---
T
E
D
Q
N
--
N
S
R
E
F
G
P
T
I
K
-
E
W
I
K
Q
S
G
G
E
A
K
---
L
A
L
N
C
V
G
G
K
S
S
-
T
G
I
A
R
K
L
N
N
N
G
L
M
L
T
Y
G
G
M
S
F
Q
P
V
T
I
P
T
S
L
Y
I
-------------------------
F
K
N
----
F
T
---
S
A
G
F
W
V
T
E
L
L
K
N
N
K
E
L
K
--------------------------
T
S
T
L
N
Q
I
I
A
W
Y
E
E
G
K
L
T
D
A
K
S
I
E
T
L
Y
D
G
T
K
P
L
H
E
L
Y
Q
D
G
V
A
N
SKD
G
K
Q
L
I
T
Y-----
29
Fugue
45.42
15%
-80
- C7 -
4ER8
1
RAYT_ECOLI
A:
[1-165]
----------------------------------------------------------------------------------------------------------------------------------------------------------------
M
S
E
Y
R
R
Y
--
Y
I
K
---
G
-----
G
T
W
F
F
T
V
N
L
R
N
R
R
S
Q
L
L
T
T
Q
Y
------
Q
M
L
R
H
-------
A
I
I
K
V
K
R
D
R
P
F
E
I
N
A
W
V
V
L
P
E
-
H
M
H
C
I
W
T
L
P
EGDDD
F
S
S
R
W
R
E
I
K
K
Q
---
F
T
H
A
C
---
G
L
K
N
I
--
W
Q
P
R
F
W
E
H
A
I
-
R
N
T
K
D
Y
R
H
H
V
D
---
Y
I
Y
I
N
P
V
K
H
G
W
V
K
Q
V
S
D
W
P
F
S
T
F
H
R
D
V
A
R
G
L
Y
P
I
D
W
A
G
D
V
T
D
F
S
-------------------------
A
G
E
----
R
I
---
I
S
--------------------------------------------------------------------------------------------------
26
Fugue
41.29
11%
-63
- C2 -
2GZ4
-
?
A:
[6-205]
------------------------------------------------
S
P
R
A
----------
W
----
Q
R
--
M
L
S
G
R
---------------------------------------
R
L
D
L
L
D
P
S
P
L
D
V
--
E
I
A
-----------
D
I
A
H
G
L
A
------------------------------------
R
V
A
R
W
N
G
Q
T
R
G
D
H
-
A
F
------
T
V
A
Q
H
-------
C
L
I
V
E
T
I
F
C
R
M
C
P
---
G
A
T
P
D
E
M
Q
M
A
L
L
H
------------
D
-
A
P
E
Y
---
V
I
G
--------
D
M
--
I
S
P
F
K
S
V
V
G
G
-
G
Y
K
T
V
E
K
R
L
E
A
---
A
V
H
L
R
F
G
L
P
P
H
-
A
S
R
E
L
K
D
R
I
K
K
A
D
T
V
A
A
F
F
E
A
T
E
L
A
G
F
S
T
A
E
A
-------------------------
Q
K
F
FGLP
R
G
---
I
T
R
D
M
F
D
I
I
P
L
P
S
T
E
A
Q
--------------------------
R
L
F
I
A
R
F
E
A
I
E
T
L
R
V
T
R
T
G
G
-------------------------------------
5
PsiBlast_PDB
38.36
36%
41
- C8 -
3ATQ
2
?
A:
[162-202]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
---
S
F
R
S
K
--
L
P
P
E
L
P
I
T
E
D
-
L
D
D
K
D
A
D
V
A
Y
R
E
V
L
L
T
K
E
D
I
E
D
H
D
Y
-
L
R
I
F
I
D
Q
E
T
S
P
G
G
Y
W
W
Y
F
P
K
G
K
N
K
V
N
V
G
L
G
I
Q
-------------------------
G
G
M
----
G
Y
---
P
S
I
H
E
Y
Y
K
K
Y
L
D
K
Y
A
P
D
--------------------------
V
D
K
S
K
L
L
V
K
G
G
A
L
V
P
T
R
R
P
L
Y
T
M
A
W
N
G
I
I
V
---------------------------
1
PsiBlast_PDB
38.26
36%
47
- C8 -
4OPL
1
?
A:
[162-202]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
---
S
F
R
S
K
--
L
P
P
E
L
P
I
T
E
D
-
L
D
D
K
D
A
D
V
A
Y
R
E
V
L
L
T
K
E
D
I
E
D
H
D
Y
-
L
R
I
F
F
D
Q
E
T
S
P
G
G
Y
W
W
Y
F
P
K
G
K
N
K
V
N
V
G
L
G
I
Q
-------------------------
G
G
M
----
G
Y
---
P
S
I
H
E
Y
Y
K
K
Y
L
D
K
Y
A
P
D
--------------------------
V
D
K
S
K
L
L
V
K
G
G
A
L
V
P
T
R
R
P
L
Y
T
M
A
W
N
G
I
I
V
---------------------------
3
PsiBlast_PDB
38.12
36%
40
- C8 -
4OPT
1
?
A:
[162-202]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
---
S
F
R
S
K
--
L
P
P
E
L
P
I
T
E
D
-
L
D
D
K
D
A
D
V
A
Y
R
E
V
L
L
T
K
E
D
I
E
D
H
D
Y
-
L
R
I
F
F
D
Q
E
T
S
P
G
G
Y
W
W
Y
F
P
K
G
K
N
K
V
N
V
G
L
G
I
Q
-------------------------
G
G
M
----
G
Y
---
P
S
I
H
E
Y
Y
K
K
Y
L
D
K
Y
A
P
D
--------------------------
V
D
K
S
K
L
L
V
K
G
G
A
L
V
P
T
R
R
P
L
Y
T
M
A
W
N
G
I
I
V
---------------------------
9
PsiBlast_PDB
38.01
36%
35
- C8 -
4OPG
1
?
A:
[162-202]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
---
S
F
R
S
K
--
L
P
P
E
L
P
I
T
E
D
-
L
D
D
K
D
A
D
V
A
Y
R
E
V
L
L
T
K
E
D
I
E
D
H
D
Y
-
L
R
I
F
I
D
Q
E
T
S
P
G
G
Y
W
W
Y
F
P
K
G
K
N
K
V
N
V
G
L
G
I
Q
-------------------------
G
G
M
----
G
Y
---
P
S
I
H
E
Y
Y
K
K
Y
L
D
K
Y
A
P
D
--------------------------
V
D
K
S
K
L
L
V
K
G
G
A
L
V
P
T
R
R
P
L
Y
T
M
A
W
N
G
I
I
V
---------------------------
4
PsiBlast_PDB
37.89
36%
52
- C8 -
4OPU
2
?
A:
[162-202]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
---
S
F
R
S
K
--
L
P
P
E
L
P
I
T
E
D
-
L
D
D
K
D
A
D
V
A
Y
R
E
V
L
L
T
K
E
D
I
E
D
H
D
Y
-
L
R
I
F
I
D
Q
E
T
S
P
G
G
Y
W
W
Y
F
P
K
G
K
N
K
V
N
V
G
L
G
I
Q
-------------------------
G
G
M
----
G
Y
---
P
S
I
H
E
Y
Y
K
K
Y
L
D
K
Y
A
P
D
--------------------------
V
D
K
S
K
L
L
V
K
G
G
A
L
V
P
T
R
R
P
L
Y
T
M
A
W
N
G
I
I
V
---------------------------
2
PsiBlast_PDB
37.88
36%
34
- C8 -
4OPI
1
?
A:
[162-202]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
---
S
F
R
S
K
--
L
P
P
E
L
P
I
T
E
D
-
L
D
D
K
D
A
D
V
A
Y
R
E
V
L
L
T
K
E
D
I
E
D
H
D
Y
-
L
R
I
F
I
D
Q
E
T
S
P
G
G
Y
W
W
Y
L
P
K
G
K
N
K
V
N
V
G
L
G
I
Q
-------------------------
G
G
M
----
G
Y
---
P
S
I
H
E
Y
Y
K
K
Y
L
D
K
Y
A
P
D
--------------------------
V
D
K
S
K
L
L
V
K
G
G
A
L
V
P
T
R
R
P
L
Y
T
M
A
W
N
G
I
I
V
---------------------------
8
PsiBlast_PDB
37.14
36%
38
- C8 -
4OPD
1
?
A:
[162-202]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
---
S
F
R
S
K
--
L
P
P
E
L
P
I
T
E
D
-
L
D
D
K
D
A
D
V
A
Y
R
E
V
L
L
T
K
E
D
I
E
D
H
D
Y
-
L
R
I
F
I
D
Q
E
T
S
P
G
G
Y
W
W
Y
F
P
K
G
K
N
K
V
N
V
G
L
G
I
Q
-------------------------
G
G
M
----
G
Y
---
P
S
I
H
E
Y
Y
K
K
Y
L
D
K
Y
A
P
D
--------------------------
V
D
K
S
K
L
L
V
K
G
G
A
L
V
P
T
R
R
P
L
Y
T
M
A
W
N
G
I
I
V
---------------------------
10
PsiBlast_CBE
37.00
36%
39
- C8 -
4OPD
1
?
B:
[162-202]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
---
S
F
R
S
K
--
L
P
P
E
L
P
I
T
E
D
-
L
D
D
K
D
A
D
V
A
Y
R
EVL
L
T
K
E
D
I
E
D
H
D
Y
-
L
R
I
F
I
D
Q
E
T
S
P
G
G
Y
W
W
Y
F
P
K
G
K
N
K
V
N
V
G
L
G
I
Q
-------------------------
G
G
M
----
G
Y
---
P
S
I
H
E
Y
Y
K
K
Y
L
D
K
Y
A
P
D
--------------------------
V
D
K
S
K
L
L
V
K
G
G
A
L
V
P
T
R
R
P
L
Y
T
M
A
W
N
G
I
I
V
---------------------------
7
PsiBlast_PDB
36.93
36%
44
* C8 *
4OPC
2
?
A:
[162-202]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
---
S
F
R
S
K
--
L
P
P
E
L
P
I
T
E
D
-
L
D
D
K
D
A
D
V
A
Y
R
E
V
L
L
T
K
E
D
I
E
D
H
D
Y
-
L
R
I
F
I
D
Q
E
T
S
P
G
G
Y
W
W
Y
F
P
K
G
K
N
K
V
N
V
G
L
G
I
Q
-------------------------
G
G
M
----
G
Y
---
P
S
I
H
E
Y
Y
K
K
Y
L
D
K
Y
A
P
D
--------------------------
V
D
K
S
K
L
L
V
K
G
G
A
L
V
P
T
R
R
P
L
Y
T
M
A
W
N
G
I
I
V
---------------------------
6
PsiBlast_PDB
36.37
36%
39
- C8 -
3ATR
1
?
A:
[162-202]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
---
S
F
R
S
K
--
L
P
P
E
L
P
I
T
E
D
-
L
D
D
K
D
A
D
V
A
Y
R
E
V
L
L
T
K
E
D
I
E
D
H
D
Y
-
L
R
I
F
I
D
Q
E
T
S
P
G
G
Y
W
W
Y
F
P
K
G
K
N
K
V
N
V
G
L
G
I
Q
-------------------------
G
G
M
----
G
Y
---
P
S
I
H
E
Y
Y
K
K
Y
L
D
K
Y
A
P
D
--------------------------
V
D
K
S
K
L
L
V
K
G
G
A
L
V
P
T
R
R
P
L
Y
T
M
A
W
N
G
I
I
V
---------------------------
14
HHSearch
29.43
33%
231
* C4 *
1OZ9
-
YBEY_AQUAE
A:
[55-72]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
L
N
K
T
---
Y
R
K
K
D
---
K
P
T
D
V
--
L
S
F
P
M
G
E
E
F
G
-
G
Y
K
I
L
G
D
V
V
I
S
---
Q
D
T
A
E
R
Q
A
R
E
L
-
G
H
S
L
E
E
E
V
K
R
L
I
V
H
G
I
V
H
L
L
G
Y
D
H
E
K
G
G
E
E
E
K
-------------------------
K
F
R
----
E
L
---
E
N
Y
V
L
S
K
L
S
K
------------------------------------------------------------------------------------------
15
HHSearch
28.11
28%
196
- C4 -
1XM5
-
YBEY_ECOLI
A:
[53-70]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
L
N
L
T
---
Y
R
G
K
D
---
K
P
T
N
V
--
L
S
F
P
F
E
V
P
P
G
-
M
E
M
S
L
L
G
D
L
V
I
---
C
R
Q
V
V
E
K
E
A
Q
E
-
Q
G
K
P
L
E
A
H
W
A
H
M
V
V
H
G
S
L
H
L
L
G
Y
D
H
I
E
D
D
E
A
E
-------------------------
E
M
E
----
A
L
---
E
T
E
I
M
L
A
L
G
Y
E
D
P
Y
I
A
------------------------------------------------------------------------------------
24
Fugue
25.79
26%
289
* C6 *
1T6O
1
B:
[1-19]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
-
D
S
R
R
S
A
D
A
L
L
R
---
L
Q
A
M
A
G
I
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
22
Fugue
25.65
23%
183
- C6 -
2QDQ
-
A:
[2496-2529]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
G
---
I
A
Q
I
I
--
A
A
Q
E
E
M
L
R
K
E
-
R
E
L
E
E
A
R
K
K
L
A
---
Q
I
R
Q
Q
Q
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
19
HHSearch
23.40
62%
652
- C5 -
2EO2
-
A:
[39-53]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
L
G
I
H
---
K
-
T
D
P
ST
L
T
E
E
E
V
R
K
F
A
-
R
L
N
I
D
P
A
T
I
T
W
---
Q
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------