@TOME V2.3
(Nov 2016)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : gbs1051: (2015-12-05 )
MKVLVVDDEPVARNELIYLLNKYDSNLVIAEAHDMATALAILLRETFDVALLDIHLRDDSGLQLAEYINKMPKPPLLIFATAYDQYAIQAFEHDARDYLLKPYDFDRLKQAMDRVKGALSTSTIIESVTSGPLFKQQYPLTVEDRIYLVSADDILLIEAMQGKLIIQTPDKNYEIDGSLQQWQDKLPSSQFVRVHRSYIVNINAIKTIEPWFNQTLQLHLCNKITVPVSRANVKPLKQMLGIST
Atome Classification :
(20 SA)
.........10........20........30........40........50........60........70-...----......80..--..--.--..--.90........100..----...---..110.......120.......130.......140.......150.......160.......170.......180.......190.......200.......210.......220.......230.......240..------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
M
K
V
L
V
VDDEPVARN
E
L
I
Y
L
L
NKYDS
N
L
V
I
A
E
A
H
D
M
A
T
A
L
A
I
L
L
R
ETF
D
V
A
L
L
D
I
H
LRDDSG
L
Q
L
A
E
Y
I
NK--MPK----P
P
L
L
I
F
AT
A
Y
--
D
Q
--
Y
--
A
I
--
Q
A
F
E
H
D
A
R
DYLLKPY
D
----
F
D
R
---
L
K
Q
A
M
D
R
V
K
GAL
S
T
S
T
I
I
E
S
VTSGPLFKQQYPLTVE
D
R
I
Y
L
VSAD
D
I
L
L
I
E
AMQ
G
K
L
I
I
QTPDK
N
Y
EIDG
S
L
Q
Q
W
Q
D
KLP
S
S
Q
F
V
R
V
H
R
S
Y
I
V
N
I
N
A
I
K
TI
E
P
W
F
NQ
T
L
Q
L
H
L
C
N
K
I
T
VPVSRA
N
V
K
P
L
K
Q
M
LGIST------------------------------------------------------------------------------------------------------------------------------------------------------------
11
PsiBlast_PDB
74.99
30%
-132
- C1 -
4LX8
1
?
A:
[5-122]
M
K
I
L
I
V
D
D
F
S
T
M
R
R
I
V
K
N
L
L
R
D
L
G
F
N
N
T
-
Q
E
A
D
D
G
L
T
A
L
P
M
L
K
K
G
D
F
D
F
V
V
T
D
W
N
M
P
G
M
Q
G
I
D
L
L
K
N
I
R
A
--
D
E
E
LKH
L
P
V
L
M
I
T
A
E
A
K
--
R
E
--
Q
--
I
I
--
E
A
A
Q
A
G
V
N
G
Y
I
V
K
P
F
T
----
A
A
T
---
L
K
E
K
L
D
K
I
F
E
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
13
PsiBlast_PDB
74.64
30%
-132
- C1 -
4HNQ
1
?
A:
[5-122]
M
K
I
L
I
V
D
D
F
S
T
M
R
R
I
V
K
N
L
L
R
D
L
G
F
N
N
T
-
Q
E
A
D
D
G
L
T
A
L
P
M
L
K
K
G
D
F
D
F
V
V
T
D
W
N
M
P
G
M
Q
G
I
D
L
L
K
N
I
R
A
--
D
E
E
LKH
L
P
V
L
M
I
T
A
E
A
K
--
R
E
--
A
--
I
I
--
E
A
A
Q
A
G
V
N
G
Y
I
V
K
P
F
T
----
A
A
T
---
L
K
E
K
L
D
K
I
F
E
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
14
PsiBlast_PDB
73.92
30%
-135
- C1 -
3TO5
1
?
A:
[13-130]
M
K
I
L
I
V
D
D
F
S
T
M
R
R
I
V
K
N
L
L
R
D
L
G
F
N
N
T
-
Q
E
A
D
D
G
L
T
A
L
P
M
L
K
K
G
D
F
D
F
V
V
T
D
W
N
M
P
G
M
Q
G
I
D
L
L
K
N
I
R
A
--
D
E
E
LKH
L
P
V
L
M
I
T
A
E
A
K
--
R
E
--
Q
--
I
I
--
E
A
A
Q
A
G
V
N
G
Y
I
V
K
P
F
T
----
A
A
T
---
L
K
E
K
L
D
K
I
F
E
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
73.76
33%
-116
- C1 -
2QV0
-
MRKE_KLEPN
A:
[58-175]
M
K
V
I
I
V
E
D
E
F
L
A
Q
Q
E
L
S
W
L
I
N
T
H
S
Q
M
E
I
V
G
S
F
D
D
G
L
D
V
L
K
F
L
Q
H
N
K
V
D
A
I
F
L
D
I
N
I
P
S
L
D
G
V
L
L
A
Q
N
I
S
Q
--
F
A
H
----
K
P
F
I
V
F
I
T
A
W
--
K
E
--
H
--
A
V
--
E
A
F
E
L
E
A
F
D
Y
I
L
K
P
Y
Q
----
E
S
R
---
I
I
N
M
L
Q
K
L
T
T
A
W
E
Q
Q
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
21
PsiBlast_CBE
73.24
33%
-121
- C1 -
3EUL
1
NARL_MYCTU
C:
[16-134]
V
R
V
V
V
G
D
D
H
P
L
F
R
E
G
V
V
R
A
L
S
L
S
G
S
V
N
V
V
G
E
A
D
D
G
A
A
A
L
E
L
I
K
A
H
L
P
D
V
A
L
L
D
Y
R
M
P
G
M
D
G
A
Q
V
A
A
A
V
R
S
--
Y
E
L
----
P
T
R
V
L
L
I
S
A
H
--
D
E
--
P
--
A
I
V
Y
Q
A
L
Q
Q
G
A
A
G
F
L
L
K
--
D
----
S
T
R
T
E
I
V
K
A
V
L
D
C
A
K
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10
PsiBlast_PDB
71.43
30%
-123
- C1 -
4HNS
2
?
A:
[5-122]
M
K
I
L
I
V
D
D
F
S
T
M
R
R
I
V
K
N
L
L
R
D
L
G
F
N
N
T
-
Q
E
A
D
D
G
L
T
A
L
P
M
L
K
K
G
D
F
D
F
V
V
T
D
W
N
M
P
G
M
Q
G
I
D
L
L
K
N
I
R
A
--
D
E
E
LKH
L
P
V
L
M
I
T
A
E
A
K
--
R
E
--
Q
--
I
I
--
E
A
A
Q
A
G
V
N
G
Y
I
V
K
P
F
T
----
A
A
T
---
L
K
E
K
L
D
K
I
F
E
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
12
PsiBlast_PDB
71.03
30%
-130
- C1 -
4JP1
1
?
A:
[5-122]
M
K
I
L
I
V
D
D
F
S
T
M
R
R
I
V
K
N
L
L
R
D
L
G
F
N
N
T
-
Q
E
A
D
D
G
L
T
A
L
P
M
L
K
K
G
D
F
D
F
V
V
T
D
W
N
M
P
G
M
Q
G
I
D
L
L
K
N
I
R
A
--
D
E
E
LKH
L
P
V
L
M
I
T
A
E
A
K
--
R
E
--
Q
--
I
I
--
E
A
A
Q
A
G
V
N
G
Y
I
V
K
P
F
T
----
A
A
T
---
L
K
E
K
L
D
K
I
F
E
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
PsiBlast_PDB
70.15
33%
-122
- C1 -
3EUL
-
NARL_MYCTU
A:
[16-135]
V
R
V
V
V
G
D
D
H
P
L
F
R
E
G
V
V
R
A
L
S
L
S
G
S
V
N
V
V
G
E
A
D
D
G
A
A
A
L
E
L
I
K
A
H
L
P
D
V
A
L
L
D
Y
R
M
P
G
M
D
G
A
Q
V
A
A
A
V
R
S
--
Y
E
L
----
P
T
R
V
L
L
I
S
A
H
--
D
E
--
P
--
A
I
V
Y
Q
A
L
Q
Q
G
A
A
G
F
L
L
K
--
D
----
S
T
R
T
E
I
V
K
A
V
L
D
C
A
K
G
R
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
35
HHSearch
69.93
32%
-115
- C1 -
2QV0
-
MRKE_KLEPN
A:
[59-176]
-
K
V
I
I
V
E
D
E
F
L
A
Q
Q
E
L
S
W
L
I
N
T
H
S
Q
M
E
I
V
G
S
F
D
D
G
L
D
V
L
K
F
L
Q
H
N
K
V
D
A
I
F
L
D
I
N
I
P
S
L
D
G
V
L
L
A
Q
N
I
S
Q
--
F
A
H
----
K
P
F
I
V
F
I
T
A
W
--
K
E
--
H
--
A
V
--
E
A
F
E
L
E
A
F
D
Y
I
L
K
P
Y
Q
----
E
S
R
---
I
I
N
M
L
Q
K
L
T
T
A
W
E
Q
Q
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
22
PsiBlast_CBE
69.93
33%
-116
- C1 -
3EUL
1
NARL_MYCTU
B:
[16-135]
V
R
V
V
V
G
D
D
H
P
L
F
R
E
G
V
V
R
A
L
S
L
S
G
S
V
N
V
V
G
E
A
D
D
G
A
A
A
L
E
L
I
K
A
H
L
P
D
V
A
L
L
D
Y
R
M
P
G
M
D
G
A
Q
V
A
A
A
V
R
S
--
Y
E
L
----
P
T
R
V
L
L
I
S
A
H
--
D
E
--
P
--
A
I
V
Y
Q
A
L
Q
Q
G
A
A
G
F
L
L
K
--
D
----
S
T
R
T
E
I
V
K
A
V
L
D
C
A
K
G
R
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
46
HHSearch
68.79
29%
-121
- C1 -
3EUL
-
NARL_MYCTU
A:
[17-135]
-
R
V
V
V
G
D
D
H
P
L
F
R
E
G
V
V
R
A
L
S
L
S
G
S
V
N
V
V
G
E
A
D
D
G
A
A
A
L
E
L
I
K
A
H
L
P
D
V
A
L
L
D
Y
R
M
P
G
M
D
G
A
Q
V
A
A
A
V
R
S
--
Y
E
L
----
P
T
R
V
L
L
I
S
A
H
--
D
E
--
P
A
I
V
Y
--
Q
A
L
Q
Q
G
A
A
G
F
L
L
K
D
S
T
----
R
T
E
---
I
V
K
A
V
L
D
C
A
K
G
R
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
PsiBlast_PDB
68.64
32%
-129
- C1 -
3A0U
5
?
A:
[3-114]
-
R
I
L
V
V
D
D
E
P
N
I
R
E
L
L
K
E
E
L
Q
E
E
G
Y
E
I
D
T
A
E
N
G
E
--
E
A
L
K
K
F
F
S
G
N
Y
D
L
V
I
L
D
I
E
M
P
G
I
S
G
L
E
V
A
G
E
I
R
K
--
K
K
K
----
D
A
K
I
I
L
L
T
A
Y
--
S
H
--
Y
--
R
S
--
D
L
S
S
W
A
A
D
E
Y
V
V
K
S
F
N
----
F
D
E
---
L
K
E
K
V
K
K
L
L
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
PsiBlast_PDB
68.60
32%
-130
- C1 -
3A10
4
?
A:
[3-114]
-
R
I
L
V
V
D
D
E
P
N
I
R
E
L
L
K
E
E
L
Q
E
E
G
Y
E
I
D
T
A
E
N
G
E
--
E
A
L
K
K
F
F
S
G
N
Y
D
L
V
I
L
D
I
E
M
P
G
I
S
G
L
E
V
A
G
E
I
R
K
--
K
K
K
----
D
A
K
I
I
L
L
T
A
Y
--
S
H
--
Y
--
R
S
--
D
M
S
S
W
A
A
D
E
Y
V
V
K
S
F
N
----
F
D
E
---
L
K
E
K
V
K
K
L
L
S
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
20
PsiBlast_PDB
67.97
27%
-123
- C1 -
1ZES
2
PHOB_ECOLI
A:
[4-123]
-
R
I
L
V
V
E
D
E
A
P
I
R
E
M
V
C
F
V
L
E
Q
--
N
G
F
Q
P
V
E
A
E
D
Y
D
S
A
V
N
Q
L
N
E
P
W
P
D
L
I
L
L
D
W
M
L
P
G
G
S
G
I
Q
F
I
K
H
L
K
R
E
S
M
T
R
D
I
--
P
V
V
M
L
T
A
R
G
E
--
E
E
--
D
--
R
V
--
R
G
L
E
T
G
A
D
D
Y
I
T
K
P
F
S
P
K
E
L
V
A
R
---
I
K
A
V
M
R
R
I
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
49
HHSearch
66.32
33%
-126
- C1 -
3A10
4
?
A:
[3-113]
-
R
I
L
V
V
D
D
E
P
N
I
R
E
L
L
K
E
E
L
Q
E
E
-
G
Y
E
-
I
D
T
A
E
N
G
E
E
A
L
K
K
F
F
S
G
N
Y
D
L
V
I
L
D
I
E
M
P
G
I
S
G
L
E
V
A
G
E
I
R
K
--
K
K
K
----
D
A
K
I
I
L
L
T
A
Y
--
S
H
--
Y
--
R
S
--
D
M
S
S
W
A
A
D
E
Y
V
V
K
S
F
N
----
F
D
E
---
L
K
E
K
V
K
K
L
L
S
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
19
PsiBlast_PDB
65.99
25%
-128
- C1 -
4E7P
2
?
A:
[21-137]
M
K
V
L
V
A
E
D
Q
S
M
L
R
D
A
M
C
Q
L
L
T
L
Q
P
D
V
E
S
V
L
Q
A
K
N
G
Q
E
A
I
Q
L
L
E
K
E
S
V
D
I
A
I
L
D
V
E
M
P
V
K
T
G
L
E
V
L
E
W
I
R
S
--
E
K
L
----
E
T
K
V
V
V
V
T
T
F
--
K
R
A
G
Y
--
F
E
--
R
A
V
K
A
G
V
D
A
Y
V
L
K
E
R
S
----
I
A
D
---
L
M
Q
T
L
H
T
V
L
E
G
R
K
E
Y
S
P
E
L
M
E
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
59
Fugue
65.95
18%
-86
- C1 -
1NY5
8
?
A:
[1-384]
M
N
V
L
V
I
E
D
D
K
V
F
R
G
L
L
E
E
Y
L
S
M
K
--
G
I
K
V
E
S
A
E
R
G
K
E
A
Y
K
L
L
S
E
K
H
F
N
V
V
L
L
D
L
L
L
P
D
V
N
G
L
E
I
L
K
W
I
K
E
--
R
S
P
----
E
T
E
V
I
V
I
T
G
H
GT
I
K
--
T
--
A
V
--
E
A
M
K
M
G
A
Y
D
F
L
T
K
P
C
M
----
L
E
E
---
I
E
L
T
I
N
K
A
I
E
H
R
K
L
R
K
E
N
E
L
L
R
R
E
K
D
--
L
K
E
E
E
Y
V
F
E
S
P
K
M
K
E
I
L
E
K
I
K
K
I
S
C
A
E
C
P
V
L
I
T
G
E
S
G
V
G
K
E
V
V
A
R
L
I
H
K
L
S
D
R
S
K
------
E
P
F
V
A
L
N
V
A
S
I
P
R
D
I
F
E
A
E
L
F
G
Y
--------
E
K
G
A
F
T
G
A
V
S
S
K
E
G
F
F
E
L
A
DG
G
T
L
F
L
D
EIGELS
L
E
A
Q
A
K
L
L
R
V
I
E
SG
K
F
Y
R
LGGRK
E
I
E
V
N
V
R
I
L
A
A
T
NRN
I
K
E
L
V
K
E
GKFR
E
D
L
Y
Y
R
L
G
V
I
E
I
E
I
P
P
LRERKED
I
I
P
L
A
N
H
F
L
K
K
F
S
R
K
Y
AKEVEGFT
K
S
A
Q
E
L
L
L
S
YPWYGN
V
R
E
L
K
N
V
I
E
R
A
V
L
F
SEGKFID
R
G
E
L
S
C
L
V
18
PsiBlast_PDB
65.95
25%
-125
- C1 -
4E7O
1
?
A:
[21-137]
M
K
V
L
V
A
E
D
Q
S
M
L
R
D
A
M
C
Q
L
L
T
L
Q
P
D
V
E
S
V
L
Q
A
K
N
G
Q
E
A
I
Q
L
L
E
K
E
S
V
D
I
A
I
L
D
V
E
M
P
V
K
T
G
L
E
V
L
E
W
I
R
S
--
E
K
L
----
E
T
K
V
V
V
V
T
T
F
--
K
R
AG
Y
--
F
E
--
R
A
V
K
A
G
V
D
A
Y
V
L
K
E
R
S
----
I
A
D
---
L
M
Q
T
L
H
T
V
L
E
G
R
K
E
Y
S
P
E
L
M
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
64.75
32%
-129
- C2 -
3D6W
2
?
A:
[16-109]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
P
F
S
K
V
M
Y
L
E
A
K
D
K
K
T
Y
V
N
A
E
E
L
T
G
T
H
K
Y
S
L
Q
E
F
E
Y
L
L
P
K
D
S
F
I
R
C
H
R
S
F
I
V
N
V
N
H
I
K
A
I
Y
P
D
T
H
S
T
F
L
L
S
M
D
N
G
E
R
V
P
V
S
Q
S
Y
A
S
Y
F
R
K
L
L
G
F
--------------------------------------------------------------------------------------------------------------------------------------------------------------
33
HHSearch
64.03
31%
-135
- C2 -
3D6W
3
?
A:
[4-109]
-------------------------------------------------------------------------------------------------------------------------------------------------------------
V
V
T
L
K
T
T
D
G
W
I
P
V
P
F
S
K
V
M
Y
L
E
A
K
D
K
K
T
Y
V
N
A
E
E
L
T
G
T
H
K
Y
S
L
Q
E
F
E
Y
L
L
P
K
D
S
F
I
R
C
H
R
S
F
I
V
N
V
N
H
I
K
A
I
Y
P
D
T
H
S
T
F
L
L
S
M
D
N
G
E
R
V
P
V
S
Q
S
Y
A
S
Y
F
R
K
L
L
G
F
--------------------------------------------------------------------------------------------------------------------------------------------------------------