@TOME V2.3
(Nov 2016)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : gbs1369: (2015-12-07 )
MKLLHKKSILECSELDEKIHQAEMNQLMDMLLSLPNYDCDIEVSFEDDYHKDKREPLFYESNLHRIFEFIEAQDIKNGVDTFLTDEHHLAFRAYGQGYFHKGKEGLITSLLTVKCFEEGMVPVDMSKYLLSPASDLEPSLTLEGGADA
Atome Classification :
(20 SA)
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------.....-----------....10........20........30..------..---.--...-40........50.---.-------......--60------......-------...-70..-......80......-..90........-100--------.......110.....-..120--.......130..-.....140......-----------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MKL
L
H
-----------
K
K
S
I
L
E
C
S
E
L
D
E
K
I
H
Q
A
E
M
N
Q
L
M
D
M
L
L
S------LP---N--YD
C
-
D
I
E
V
S
FEDDYHKD---K-------REPL
F
Y
--
E
-------
S
N
L
H
R
I
-------
F
E
F
-
I
E
A
Q
-
D
I
K
N
G
V
D
T
FLTDEH-
H
L
A
F
R
AYGQGYF-HKG--------KE
G
L
I
T
S
L
L
T
V
K
C
F
E-EGMVP--V
D
M
S
K
Y
LLSPAS-DLEP
S
L
T
LEGGADA-----------------------------------------------------
38
Fugue
77.39
20%
-45
- C4 -
4RGP
6
?
A:
[2-256]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------NAT
E
Q
E
T
L
T
I
L
L
D
V
YA
Y
Y
Q
A
Y
Q
I
V
K
A
SQFFS
D
D
I
I
F
L
L
E
L
L
K
E
R
R
-----------
E
L
N
V
D
F
L
F
Q
N
Q
V
H
L
Q
E
L
E
L
T
Y
H
I
S
L
L
D
N
A
Y
E
E
E
L
L
A
---
N
--
Y
-
I
M
D
L
E
A
K
L
R
N
D
H
I
I
D
F
V
R
S
-------
V
S
P
I
L
Y
--
R
L
L
M
R
L
M
Q
S
Q
V
A
D
I
-------
N
D
Y
-
I
Y
---
D
A
K
N
D
Q
Y
D
T
W
K
F
D
K
M
H
D
S
A
N
P
F
V
Q
N
F
V
-
A
K
G
--------
R
D
S
K
I
T
S
R
S
L
A
D
F
I
Q
-
L
T
D
L
P
--
Q
A
I
K
D
N
I
L
L
-
L
R
-
D
F
E
K
S
V
R
N
P
L
A
H
L
I
KPFD
E
E
E
L
H
R
T
TGFS
S
Q
T
F
L
E
K
I
I
Q
L
A
V
F
S
G
I
H
Y
D
NDKF
Y
F
D
K
V
N
E
L
I
K
R
I
Y
Q
36
Fugue
75.97
18%
-9
- C5 -
4P42
2
ESYT2_HUMAN
A:
[3-470]
D
T
E
R
A
E
W
L
N
K
T
V
K
H
M
W
P
F
I
C
Q
F
I
E
K
L
F
R
ET
I
E
P
A
V
R
G
ANTHLSTFSFTKVDVGQ
Q
P
L
R
I
N
G
V
K
V
Y
T
E
NVDKR
Q
I
I
L
D
L
Q
I
S
F
V
G
N
C
E
I
D
L
E
IKRYF
C
R
A
G
V
K
S
I
Q
I
H
G
T
M
R
V
I
L
E
PLIGDMPLVG
A
L
S
I
F
F
LRK
P
L
L
E
I
N
W
T
G
L
T
N
L
L
D
VPGLNGLS
D
T
I
I
L
D
I
I
S
N
Y
L
V
LP
N
R
I
T
V
P
LVS
E
V
Q
I
A
Q
L
R
F
P
V
P
K
G
V
L
R
I
HF
I
E
A
Q
DLQGKDTYLKGLVKGKSD
P
Y
G
I
I
R
V
GN
Q
I
F
Q
S
R
V
I
K
ENLSPKWN
E
V
Y
E
A
L
V
Y
EHPG
Q
E
L
E
I
E
L
F
D
EDPDKDDFL
G
S
L
M
I
D
L
I
E
V
E
K
E
R
L
L
D
E
W
F
T
L
D
EVP
K
G
K
L
H
L
R
L
E
W
L
T
L
M
P
-----------
N
A
S
N
L
D
K
V
L
T
D
I
G
L
S
S
A
L
L
I
L
Y
L
D
S
A
R
N
------
L
P
SSS
N
--
P
N
P
-
V
V
Q
M
S
V
G
H
K
A
Q
E
S
---
K
-------
I
R
Y
K
T
N
--
E
-------
P
V
W
E
E
N
-------
F
T
F
-
F
I
H
N
-
P
K
R
Q
D
L
E
V
E
V
R
D
E
Q
-
H
Q
-----------------------------------
C
S
-
L
G
N
L
K
--
V
P
L
S
Q
L
L
T
S
E
D
M
-
T
V
S
Q
R
F
Q
L
S
N
S
G
P
N
S
T
I
K
M
K
I
A
L
R
V
L
H
L
E--------------------------------------
33
Fugue
71.40
20%
-49
- C2 -
2LN3
-
?
A:
[1-83]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
G
L
T
R
T
I
T
S
Q
N
K
E
E
L
L
E
I
A
L
K
------
F
I
---
S
--
Q
G
L
-
D
L
E
V
E
F
D
S
T
---
D
---
D
-------
K
E
I
E
E
F
--
E
-------
R
D
M
E
D
L
-------
A
K
K
-
T
G
V
Q
-
I
Q
K
Q
W
Q
G
------
N
-
K
L
R
I
R
L
K
G
S
L
E
H
-
H
H
H
--------
H
H
-----------------------------------------------------------------------------------------------------
35
Fugue
71.21
21%
-49
- C1 -
2XC8
-
?
A:
[1-121]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
I
E
I
V
N
R
K
A
V
W
Y
L
T
S
E
------
I
K
---
E
--
T
E
T
-
G
I
E
V
S
-
A
G
E
L
H
K
G
---
D
-------
E
E
V
F
P
V
--
E
-------
E
V
S
F
D
L
TPDDT
Y
P
V
E
Y
M
L
Y
L
H
M
N
V
Q
T
K
K
V
S
W
S
L
C
K
A
-
Y
L
D
----
G
E
G
Y
C
D
Y
Q
G
--------
N
E
R
L
I
M
Y
P
V
S
V
T
V
F
P
-
N
G
------------------
T
R
E
G
T
I
F
L
Y
E
K
E
D
R
-----------------------------------------------------
34
Fugue
65.55
12%
-47
- C3 -
2CWO
-
P21_BYVU
A:
[1-177]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
K
F
F
L
KDGE
T
------
S
R
A
L
S
R
S
E
S
L
L
R
R
V
K
E
L
G
T
N
S
Q
Q
S
E
I
S
E
------
C
V
---
D
--
E
F
N
-
E
L
A
S
F
N
H
L
L
V
T
V
E
---
H
-------
R
E
W
M
----
E
-------
Q
R
I
G
E
M
-------
L
K
E
-
I
R
A
F
-
L
K
V
R
V
V
T
P
M
H
K
E
T
A
-
S
D
T
L
N
A
F
L
E
E
Y
C
-
R
I
T
GLA
R
E
D
A
L
R
E
K
M
R
K
V
K
S
V
V
L
F
H
H
-
S
E
L
L
K
--
F
E
V
T
E
N
M
F
S
Y
T
E
-
L
L
K
L
N
L
S
L
R
V
I
S
S
Q
ILGMAI-----------------------------------------------
19
PsiBlast_PDB
64.96
37%
-72
- C2 -
4LCL
-
LOVD_ASPTE
A:
[100-140]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
L
T
T
I
M
A
L
Q
C
M
E
-
R
G
L
V
D
--
L
D
E
T
V
D
R
L
L
P
---
D
L
S
A
M
P
V
L
E
G
F
D
D
A
-----------------------------------------------------
37
Fugue
62.33
17%
-19
* C4 *
1PC6
2
NINB_LAMBD
A:
[1-141]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
K
-----------
K
L
T
F
E
I
R
S
P
A
H
Q
Q
N
A
I
H
A
V
Q
Q
I
------------
L
P
---
D
--
P
T
K
-
P
I
V
V
T
I
-----
Q
E
---
R
-------
N
R
S
L
D
Q
--
N
-------
R
K
L
W
A
C
-------
L
G
D
-
V
S
R
Q
-
V
E
W
H
G
R
W
L
D
A
E
S
W
K
-
C
V
F
T
A
A
L
K
Q
Q
D
V
-
V
P
N
LAGN
G
F
V
-
V
I
G
Q
S
T
S
R
M
R
V
G
E
F
A
-
E
L
L
E
L
--
I
Q
A
F
G
T
E
R
G
V
K
W
-
S
D
E
A
R
L
A
L
E
W
K
A
R
W
-----------------------------------------------------
39
Fugue
61.95
15%
-24
- C3 -
3LR4
6
?
A:
[15-118]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
Q
R
V
A
-----------
L
Q
L
V
A
I
V
K
L
T
R
T
A
L
L
Y
S
D
P
D
L
R
R
A
L
L
Q
D
------
L
E
---
S
--
N
E
----
G
V
R
V
Y
P
R
E
K
T
D
---
K
-------
F
K
L
Q
P
D
--
E
-------
S
V
N
R
L
I
-------
E
H
D
-
I
R
S
R
-
L
---
G
D
D
T
V
I
A
Q
S
V
-
N
--------------
D
--------
I
P
G
V
W
I
S
F
K
I
--------------
D
D
D
D
Y
W
V
A
L
D
R
--------------------------------------------------------------------
31
Fugue
60.01
16%
-24
* C5 *
4MT5
-
?
A:
[1-184]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------M
Q
T
A
Y
V
K
Y
V
DDTTGETL
R
Q
D
D
L
H
G
Y
TDETIPYST
A
E
G
I
K
K
Y
E
G
D
G
Y
V
L
V
S
D
G
F
K
P
G
T
K
F
G
V
G
------
T
P
---
T
--
Y
E
V
-
H
F
K
H
G
M
T
H
T
D
A
T
D
---
K
N
A
E
Q
K
T
V
T
E
T
I
H
Y
V
D
E
-------
N
N
Q
T
V
Q
-------
P
D
S
-
T
T
A
V
-
T
F
K
R
G
Y
T
T
D
N
V
T
G
K
-
V
V
S
Y
D
P
W
T
V
D
-----
G
--------
N
Q
A
D
S
K
T
F
A
A
V
P
S
P
A
V
E
G
Y
T
P
NH
Q
Q
I
N
E
F
T
V
T
P
D
S
K
D
I
V
K
T
V
V
Y
V
G
D
P
-------------------------------------------------------
20
PsiBlast_PDB
59.86
37%
-73
- C2 -
3HLC
-
LOVD_ASPTE
A:
[99-139]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
L
T
T
I
M
V
L
Q
C
M
E
-
R
G
L
V
D
--
L
D
E
T
V
D
R
L
L
P
---
D
L
S
A
M
P
V
L
E
G
F
D
D
A
-----------------------------------------------------
18
PsiBlast_PDB
58.99
37%
-81
- C2 -
3HLB
-
LOVD_ASPTE
A:
[99-139]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
L
T
T
I
M
A
L
Q
C
M
E
-
R
G
L
V
D
--
L
D
E
T
V
D
R
L
L
P
---
D
L
S
A
M
P
V
L
E
G
F
D
D
A
-----------------------------------------------------
17
PsiBlast_PDB
57.86
37%
-79
- C2 -
3HL9
-
LOVD_ASPTE
A:
[80-120]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
L
T
T
I
M
A
L
Q
C
M
E
-
R
G
L
V
D
--
L
D
E
T
V
D
R
L
L
P
---
D
L
S
A
M
P
V
L
E
G
F
D
D
A
-----------------------------------------------------
4
PsiBlast_PDB
55.24
29%
-48
- C2 -
2E8Y
1
PULA_BACSU
A:
[587-646]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
------
I
N
---
Q
--
L
D
W
-
D
R
R
E
T
F
K
E
D
V
H
Y
I
---
R
-------
R
--
L
I
S
--
L
-------
R
K
A
H
P
A
-------
F
R
L
-
R
S
A
A
-
D
I
Q
R
H
L
E
C
L
T
L
K
E
H
-
L
I
A
Y
R
L
Y
D
L
D
E
V
-
D
E
W
--------
K
D
I
I
V
I
H
H
A
S
P
D
S
V
E
-
W
R
L
P
N
--
D
I
P
Y
R
L
L
C
D
P
S
G
-
F
Q
E
D
P
T
E
I
K
K
T
V
A
V
-----------------------------------------------------
6
PsiBlast_PDB
55.18
29%
-46
- C2 -
2E9B
1
PULA_BACSU
A:
[587-646]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
------
I
N
---
Q
--
L
D
W
-
D
R
R
E
T
F
K
E
D
V
H
Y
I
---
R
-------
R
--
L
I
S
--
L
-------
R
K
A
H
P
A
-------
F
R
L
-
R
S
A
A
-
D
I
Q
R
H
L
E
C
L
T
L
K
E
H
-
L
I
A
Y
R
L
Y
D
L
D
E
V
-
D
E
W
--------
K
D
I
I
V
I
H
H
A
S
P
D
S
V
E
-
W
R
L
P
N
--
D
I
P
Y
R
L
L
C
D
P
S
G
-
F
Q
E
D
P
T
E
I
K
K
T
V
A
V
-----------------------------------------------------
5
PsiBlast_PDB
54.62
29%
-44
- C2 -
2E8Z
1
PULA_BACSU
A:
[587-646]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
------
I
N
---
Q
--
L
D
W
-
D
R
R
E
T
F
K
E
D
V
H
Y
I
---
R
-------
R
--
L
I
S
--
L
-------
R
K
A
H
P
A
-------
F
R
L
-
R
S
A
A
-
D
I
Q
R
H
L
E
C
L
T
L
K
E
H
-
L
I
A
Y
R
L
Y
D
L
D
E
V
-
D
E
W
--------
K
D
I
I
V
I
H
H
A
S
P
D
S
V
E
-
W
R
L
P
N
--
D
I
P
Y
R
L
L
C
D
P
S
G
-
F
Q
E
D
P
T
E
I
K
K
T
V
A
V
-----------------------------------------------------
28
HHSearch
52.62
21%
34
- C2 -
3HM6
2
X:
[439-476]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
K
F
V
D
D
L
F
Q
V
I
L
S
------
T
S
---
R
---
P
V
-
P
L
A
V
K
Y
---------------------------------------
F
-------
F
D
L
-
L
D
E
Q
-
A
Q
Q
H
G
I
----------------------------------------------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
49.00
34%
-2
- C2 -
3DAN
1
C74A2_PARAR
A:
[141-186]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
F
--
E
-------
T
T
Y
T
E
L
-------
F
E
G
-
L
E
A
E
-
L
A
K
N
G
K
A
A
F
N
D
V
G
E
-
Q
A
A
F
R
F
L
G
R
A
Y
F
-
N
S
N
--------
P
E
E
T
K
L
G
T
S
A
P
T
L
I
S
-
S
W
V
L
F
--
N
L
A
P
T
L
D
L
G
L
P
W
-
F
L
Q
E
P
L
L
H
T
F
R
L
P
A
-----------------------------------------------------
30
HHSearch
48.63
15%
-98
- C2 -
3IG3
1
A:
[421-462]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
Q
K
F
V
D
D
L
F
E
T
V
F
S
------
T
A
---
H
RG
S
A
L
-
P
L
A
I
K
Y
---------------------------------------
M
-------
F
D
F
-
L
D
E
Q
-
A
D
Q
R
Q
I
S
D
P
D
V
R
H
T
-
W
K
S
N
C
L
P
L
R
F
W
V
-
N
V
I
--------
K
N
P
Q
F
V
F
D
I
H
K
N
S
I
T
-
D
A
C
L
S
--
V
V
A
Q
T
F
M
D
S
C
S
T
-
S
E
H
R
L
G
K
D
S
P
S
N
K
L
-----------------------------------------------------
3
PsiBlast_PDB
48.59
34%
1
- C2 -
3DBM
1
C74A2_PARAR
A:
[141-186]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
F
--
E
-------
T
T
Y
T
E
L
-------
F
E
G
-
L
E
A
E
-
L
A
K
N
G
K
A
A
F
N
D
V
G
E
-
Q
A
A
F
R
F
L
G
R
A
Y
F
-
N
S
N
--------
P
E
E
T
K
L
G
T
S
A
P
T
L
I
S
-
S
W
V
L
F
--
N
L
A
P
T
L
D
L
G
L
P
W
-
F
L
Q
E
P
L
L
H
T
F
R
L
P
A
-----------------------------------------------------
1
PsiBlast_PDB
47.48
34%
-2
- C2 -
3DAM
1
C74A2_PARAR
A:
[141-186]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
F
--
E
-------
T
T
Y
T
E
L
-------
F
E
G
-
L
E
A
E
-
L
A
K
N
G
K
A
A
F
N
D
V
G
E
-
Q
A
A
F
R
F
L
G
R
A
Y
F
-
N
S
N
--------
P
E
E
T
K
L
G
T
S
A
P
T
L
I
S
-
S
W
V
L
F
--
N
L
A
P
T
L
D
L
G
L
P
W
-
F
L
Q
E
P
L
L
H
T
F
R
L
P
A
-----------------------------------------------------