@TOME V2.3
(Nov 2016)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : gbs1457: (2015-12-08 )
MKVALIPEKCIACGLCQTYSNIFDYQDDGIVKFSDTDNLEKEVPNSDQDTVLAVKSCPTKALTIL
Atome Classification :
(20 SA)
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------......-...10..--.-----.....-20.--......-..30......-.-.40....-....50-----.---------.....-...60....-------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
K
VAL
I
-
P
E
K
C
I
A
C
--
G
-----
L
C
Q
T
Y
-
S
-
N
--IFDYQD-D
G
I
V
K
FSDTD-
N
-
L
E
K
EVPN-SDQ
D
T
------
V
---------
L
A
VKS-CPTK
A
L
TIL-------------------------------------------------------------------------------------
42
Fugue
90.83
32%
-152
- C6 -
1WTF
3
FER_BACTH
A:
[1-81]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------P
K
Y
T
I
V
D
-
K
E
T
C
I
A
C
--
G
-----
A
C
G
A
A
A
P
-
D
--
I
Y
D
Y
D
E
-
D
G
I
A
Y
V
T
L
D
D
N
Q
-
G
I
V
E
V
P
D
-
I
L
I
D
D
------
M
---------
M
D
A
F
E
G
C
P
T
D
S
I
K
V
A
DEPFDGDPNKFE-------------------------------------------------------------------------
12
HHSearch
85.38
36%
-140
- C6 -
1IQZ
2
FER_BACTH
A:
[2-68]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
Y
T
I
V
D
-
K
E
T
C
I
A
C
--
G
-----
A
C
G
A
A
-
A
-
P
D-
I
Y
D
Y
D
E
-
D
G
I
A
Y
V
T
L
D
D
-
N
Q
G
I
V
E
V
P
D
I
L
I
D
D
M
------
M
---------
D
A
F
E
G
-
C
P
T
D
S
I
K
V
A
-------------------------------------------------------------------------------------
1
PsiBlast_PDB
80.22
32%
-131
- C6 -
1VJW
1
FER_THEMA
A:
[1-58]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
K
V
R
V
D
-
A
D
A
C
I
G
C
--
G
-----
V
C
E
N
L
C
P
-
D
--
V
F
Q
L
G
D
-
D
G
K
A
K
V
L
Q
P
-----
E
T
D
L
P
C
-
A
K
D
-------------------
A
A
D
S
-
C
P
T
G
A
I
S
V
E
-------------------------------------------------------------------------------------
4
PsiBlast_PDB
76.40
26%
-114
- C6 -
4DHV
3
FER_PYRFU
B:
[2-63]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
W
K
V
S
V
D
-
Q
D
T
C
I
G
C
--
A
-----
I
C
A
-
L
C
P
-
D
--
V
F
E
M
N
D
-
E
G
K
A
Q
P
K
V
E
V
-
I
-
E
D
E
E
L
Y
N
-
C
A
K
E
------------------
A
M
E
A
-
C
P
V
S
A
I
T
I
E
-------------------------------------------------------------------------------------
3
PsiBlast_PDB
75.47
26%
-117
- C6 -
3PNI
2
FER_PYRFU
A:
[2-63]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
W
K
V
S
V
D
-
Q
D
T
C
I
G
C
--
A
-----
I
C
A
S
L
C
P
-
D
--
V
F
E
M
N
D
-
E
G
K
A
Q
P
K
V
E
V
-
I
-
E
D
E
E
L
Y
N
-
C
A
K
E
------------------
A
M
E
A
-
C
P
V
S
A
I
T
I
E
-------------------------------------------------------------------------------------
2
PsiBlast_PDB
74.09
26%
-98
- C6 -
2Z8Q
4
FER_PYRFU
A:
[2-63]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
W
K
V
S
V
D
-
Q
D
T
C
I
G
C
--
A
-----
I
C
A
S
L
C
P
-
D
--
V
F
E
M
N
D
-
E
G
K
A
Q
P
K
V
E
V
-
I
-
E
D
E
E
L
Y
N
-
C
A
K
E
------------------
A
M
E
A
-
C
P
V
S
A
I
T
I
E
-------------------------------------------------------------------------------------
38
Fugue
73.08
20%
-141
- C6 -
4ID8
1
?
A:
[5-69]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
T
I
H
V
D
-
Q
D
K
C
Q
G
H
--
A
-----
R
C
K
A
L
-
A
P
E
--
L
F
D
L
D
D
-
Y
G
N
A
H
E
K
G
D
G
-
V
-
V
P
---
A
D
-
L
I
D
K
A
------
W
---------
L
A
K
S
N
-
C
P
E
N
A
I
D
I
T
E
D-----------------------------------------------------------------------------------
13
HHSearch
72.57
23%
-130
- C6 -
1SJ1
3
FER_PYRFU
A:
[2-63]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
W
K
V
S
V
D
-
Q
D
T
C
I
G
D
--
A
-----
I
C
A
S
L
-
C
-
P
D-
V
F
E
M
N
D
-
E
G
K
A
Q
P
K
V
E
V
------
I
E
D
E
-
E
L
Y
N
C
A
-----
K
---------
E
A
M
E
A
-
C
P
V
S
A
I
T
I
E
-------------------------------------------------------------------------------------
45
Fugue
68.76
29%
-94
* C6 *
1GTE
7
DPYD_PIG
A:
[2-1017]
APVLSKDV
A
D
I
E
S
I
L
A
LN
P
R
T
Q
S
H
A
A
L
H
S
T
L
A
K
K
L
D
K
K
H
W
KRNPDKNCFHCEKLENNFDDIKHTTLG
E
R
G
A
L
R
E
A
M
R
CLKCADA
P
C
Q
K
S
CPTHLD
I
K
S
F
I
T
S
I
S
N
KN
Y
Y
G
A
A
K
M
I
F
S
DNPL
G
L
T
C
G
M
VCPTSDLCVGGCNLYATEEGSIN
I
G
G
L
Q
Q
F
A
S
E
V
F
K
A
M
N
I
P
Q
I
R
NPCLPSQEKMPEAYSA
K
I
A
L
L
G
AG
P
A
S
I
S
C
A
S
F
L
A
R
L
GYS
D
I
T
I
F
E
KQEYVGGLSTSEIPQFRLP
Y
D
V
V
N
F
E
I
E
L
M
K
D
L
G
V
K
I
I
C
GKSLSENEIT
L
N
T
L
K
E
E
GYK
A
A
F
I
GIGLPEPKTDDIFQGLTQDQGFYTSKDF
L
P
L
V
A
K
S
S
KAGMCACHSPLPSIR
G
A
V
I
V
L
G
AG
D
T
A
F
D
C
A
T
S
A
L
R
C
GAR
R
V
F
L
V
F
RKGFVNIRAV
P
E
E
V
E
L
A
K
E
E
K
C
E
F
L
P
F
L
S
P
R
K
V
I
V
K
GGRIV
A
V
Q
F
V
R
T
E
Q
D
ETG
K
W
N
E
D
ED
Q
I
V
H
L
K
A
D
V
V
I
S
AF
G
S
V
L
R
D
P
K
V
K
E
A
L
SP
I
K
F
N
RWDLPEVDPETMQTSEPW
V
F
A
G
G
DIVGMANT
T
V
E
S
V
N
D
G
K
Q
A
S
W
Y
I
H
K
Y
I
Q
A
Q
Y
GASVSA
K
P
E
L
P
L
F
YTPVDLVDI
S
V
E
M
AGLKFINP
F
G
L
A
SAAPTTS
S
S
M
I
R
R
A
F
E
A
GWG
F
A
L
T
K
T
F
S
L
DKD
I
V
T
N
V
S
PR
I
V
R
G
TTSGPMYGPGQS
S
F
L
N
IELISEKT
A
A
Y
W
C
Q
S
V
T
E
L
K
A
D
F
P
D
N
I
V
I
A
S
I
M
C
S
YN
K
N
D
W
M
E
L
S
R
K
A
E
A
S
GAD
A
L
E
L
N
LSCPHGMGLACGQD
P
E
L
V
R
N
I
C
R
W
V
R
Q
A
VQ
I
P
F
F
A
K
L
T
PNVTD
I
V
S
I
A
R
A
A
K
E
G
GADGVTAT
N
T
V
S
G
L
MGLKADGTPWPAVGAGKRT
T
Y
G
G
V
S
G
TAI
R
P
I
A
L
R
A
V
T
T
I
A
R
A
L
PGF
P
I
L
A
T
G
GIDS
A
E
S
G
L
Q
F
L
H
S
GAS
V
L
Q
V
C
S
A
V
Q
N
QDFTV
I
Q
D
Y
C
T
G
L
K
A
L
L
Y
L
K
S
IEELQGWDGQSPGTESHQKGKPVPRIAELMGKKLPNFG
P
Y
L
E
Q
R
K
K
I
I
A
E
E
K
M
R
L
K
E
Q
NE
R
K
P
F
I
PKKPIPAIKDVIGKALQYLGTFGELSNIE
Q
V
V
A
V
I
D
E
E
M
C
I
N
C
--
G
-----
K
C
Y
M
T
-
C
-
N
--
D
S
G
Y
Q
----
A
I
Q
F
D
P
E
T
-
H
-
L
-
P
T
V
T
D
-
T
C
T
G
C
------
T
---------
L
C
L
S
V
-
C
P
I
I
D
C
I
R
M
V
SRT
T
P
Y
E
P
KRGL------------------------------------------------------------------------
22
HHSearch
63.94
22%
-134
- C6 -
3EUN
2
FER_ALLVD
A:
[2-60]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
M
I
-
T
D
E
C
I
N
C
--
D
-----
V
C
E
P
E
-
C
-
P
NG
A
I
S
Q
G
D
-
E
T
-
Y
V
I
E
-----------
P
S
-
L
C
T
E
C
VGHYET
S
---------
Q
C
V
E
V
-
C
P
V
D
A
I
I
K
D
-------------------------------------------------------------------------------------
17
HHSearch
62.56
23%
-116
- C6 -
1JNR
3
?
B:
[2-64]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
P
S
F
V
N
-
P
E
K
C
D
G
C
--
K
ALERT
A
C
E
Y
I
-
C
-
P
ND
L
M
T
L
D
K
-
E
K
M
K
A
Y
N
R
E
---------
P
D
-
M
C
W
E
C
------
Y
---------
S
C
V
K
M
-
C
P
Q
G
A
I
D
V
R
-------------------------------------------------------------------------------------
20
HHSearch
62.43
22%
-126
- C6 -
3GYX
2
?
B:
[2-63]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
Y
V
D
-
P
S
K
C
D
G
C
--
K
GGEKT
A
C
M
Y
I
-
C
-
P
ND
L
M
I
L
D
P
-
E
E
M
K
A
F
N
Q
E
---------
P
E
-
A
C
W
E
C
------
Y
---------
S
C
I
K
I
-
C
P
Q
G
A
I
T
A
R
-------------------------------------------------------------------------------------
28
HHSearch
60.31
30%
-108
- C6 -
1KQF
5
FDNH_ECOLI
B:
[126-186]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
D
F
Q
-
S
E
N
C
I
G
C
--
G
-----
Y
C
I
A
G
-
C
-
P
FN
I
P
R
L
N
K
-
E
D
N
R
--------------
V
Y
-
K
C
T
L
C
------
V
D
R
V
S
V
GQEP
A
C
V
K
T
-
C
P
T
G
A
I
H
F
G
-------------------------------------------------------------------------------------
16
HHSearch
60.18
24%
-123
- C6 -
2ZVS
2
YFHL_ECOLI
A:
[2-60]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
L
I
-
T
K
K
C
I
N
C
--
D
-----
M
C
E
P
E
-
C
-
P
NE
A
I
S
M
G
D
-
H
I
-
Y
E
I
-
N
----------
S
D
-
K
C
T
E
C
------
V
GHYETP---
T
C
Q
K
V
-
C
P
I
P
N
T
I
V
K
-------------------------------------------------------------------------------------
24
HHSearch
59.13
24%
-140
- C6 -
1RGV
2
?
A:
[2-60]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
Y
I
-
N
D
D
C
T
A
C
--
D
-----
A
C
V
E
E
-
C
-
P
NE
A
I
T
P
G
D
--
P
I
Y
V
I
-
D
----------
P
T
-
K
C
S
E
C
------
V
GAFDEP---
Q
C
R
L
V
-
C
P
A
D
C
I
P
D
N
-------------------------------------------------------------------------------------
30
HHSearch
57.71
20%
-99
- C6 -
1HFE
3
PHFL_DESVH
L:
[28-83]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
Q
I
D
-
E
A
K
C
I
G
C
--
D
-----
T
C
S
Q
Y
-
C
-
P
TA
A
I
F
G
E
M
--
G
E
P
H
S
I
P
H
---------
I
E
-
A
C
I
N
C
------
G
---------
Q
C
L
T
H
-
C
P
E
N
A
I
Y
E
A
-------------------------------------------------------------------------------------
23
HHSearch
56.61
25%
-100
- C6 -
2FGO
2
?
A:
[2-60]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
K
I
-
T
D
D
C
I
N
C
--
D
-----
V
C
E
P
E
-
C
-
P
N-
G
A
I
S
Q
G
-
E
E
I
Y
V
I
-
D
----------
P
N
-
L
C
T
E
C
------
V
GHYDEP---
Q
C
Q
Q
V
-
C
P
V
D
C
I
P
L
D
-------------------------------------------------------------------------------------
25
HHSearch
55.81
22%
-104
- C6 -
1H98
2
FER_THET8
A:
[2-56]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
H
V
I
-
C
E
P
C
I
G
V
KD
Q
-----
S
C
V
E
V
-
C
-
P
VE
C
I
Y
D
G
G
--
D
Q
F
Y
-
I
H
----------
P
E
-
E
C
I
D
C
------
G
---------
A
C
V
P
A
-
C
P
V
N
A
I
Y
P
E
-------------------------------------------------------------------------------------
39
Fugue
55.76
18%
-64
- C6 -
1JNR
3
?
B:
[2-150]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
P
S
F
V
N
-
P
E
K
C
D
G
C
--
K
-----
A
L
E
R
T
-
A
-
C
--
E
Y
I
C
P
N
-
D
L
M
T
L
D
K
E
K
M
-
K
-
A
Y
N
R
E
P
D
-
M
C
W
E
C
------
Y
---------
S
C
V
K
M
-
C
P
Q
G
A
I
D
V
R
G
YVDYSP
L
G
G
A
C
V
P
MRGTS
D
I
M
W
T
V
K
Y
RNG
K
V
L
R
F
K
F
A
IRTTPWGSIQPFEGFPEPT
E
E
A
L
K
SELLAGEPEIIGTSEF
P
Q
V
K
K
KA
35
HHSearch
55.43
23%
-111
- C6 -
2IVF
7
?
B:
[145-201]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
F
Y
L
-
A
R
M
C
N
H
C
--
T
NP---
A
C
L
A
A
-
C
-
P
TG
A
I
Y
K
R
E
D
N
G
I
V
L
-
V
D
----------
Q
E
-
R
C
K
G
H
------
R
---------
H
C
V
E
A
-
C
P
Y
K
A
I
Y
F
N
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