@TOME V2.3
(Nov 2016)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : gbs1703: (2015-12-10 )
MTEKDLLQLVVKAADEKRAEDIVILDLQPVTSVADYFVIMSASNSRQLEAIADNIREQVKGNGGDASHLEGDSKAGWVLLDLNSVVVHIFSEDERQHYNLEKLWHEAPLLDAEDFMTE
Atome Classification :
(20 SA)
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------.........10......-..20........30-...--.--.....40........50........60........70...--------.....80-...---..---...90-.......--.100.......110......---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------M
T
E
K
D
L
L
Q
L
V
V
K
AADEK-RAE
D
I
V
I
L
DLQP
V
--
T
S
V--A--
D
Y
F
V
I
M
SASNS
R
Q
L
E
A
I
A
D
N
I
R
E
Q
VKGNGGDASHLEGDSK--------A
G
W
V
L
L
D-
L
N
S
---
V
V
---
V
H
I
FS-ED
E
R
Q
HY--
N
L
E
K
L
W
HEAPLL
D
A
E
D
FMTE---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
18
HHSearch
97.58
43%
-132
- C4 -
2O5A
2
IOJAP_BACHD
A:
[2-114]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
N
Q
E
L
L
Q
L
A
V
N
A
V
D
D
K
-
K
A
E
Q
V
V
A
L
N
M
K
G
I
--
S
L
------
D
F
F
L
I
C
H
G
N
S
E
K
Q
V
Q
A
I
A
H
E
L
K
K
V
A
Q
E
Q
G
I
E
I
K
R
L
E
G
Y
E
Q
--------
A
R
W
V
L
I
D
-
L
G
D
---
V
V
---
V
H
V
F
H
-
K
D
E
R
A
Y
Y
--
N
L
E
K
L
W
---
P
T
V
E
L
E
G
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
96.65
41%
-132
- C4 -
2O5A
2
IOJAP_BACHD
A:
[2-114]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
N
Q
E
L
L
Q
L
A
V
N
A
V
D
D
K
-
K
A
E
Q
V
V
A
L
N
M
K
G
I
--
S
L
------
D
F
F
L
I
C
H
G
N
S
E
K
Q
V
Q
A
I
A
H
E
L
K
K
V
A
Q
E
Q
G
I
E
I
K
R
L
E
G
Y
E
Q
--------
A
R
W
V
L
I
D
-
L
G
D
---
V
V
---
V
H
V
F
H
-
K
D
E
R
A
Y
Y
--
N
L
E
K
L
W
---
P
T
V
E
L
E
G
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
41
Fugue
96.17
42%
-130
- C4 -
2O5A
2
IOJAP_BACHD
A:
[2-114]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
N
Q
E
L
L
Q
L
A
V
N
A
V
D
D
K
-
K
A
E
Q
V
V
A
L
N
M
--
K
--
G
I
S
--
L
--
D
F
F
L
I
C
H
G
N
S
E
K
Q
V
Q
A
I
A
H
E
L
K
K
V
A
Q
E
Q
G
I
E
I
K
R
L
E
G
Y
E
Q
--------
A
R
W
V
L
I
D
-
L
G
D
---
V
V
---
V
H
V
F
H
-
K
D
E
R
A
Y
Y
--
N
L
E
K
L
W
P
T
V
E
L
E
G
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
14
PsiBlast_CBE
94.01
41%
-131
- C4 -
2O5A
2
IOJAP_BACHD
B:
[3-112]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
Q
E
L
L
Q
L
A
V
N
A
V
D
D
K
-
K
A
E
Q
V
V
A
L
N
M
K
G
I
--
S
L
------
D
F
F
L
I
C
H
G
N
S
E
K
Q
V
Q
A
I
A
H
E
L
K
K
V
A
Q
E
Q
G
I
E
I
K
R
L
E
G
Y
E
Q
--------
A
R
W
V
L
I
D
-
L
G
D
---
V
V
---
V
H
V
F
H
-
K
D
E
R
A
Y
Y
--
N
L
E
K
L
W
---
P
T
V
E
L
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
PsiBlast_PDB
86.67
29%
-145
- C4 -
2ID1
1
IOJAP_CHRVO
A:
[4-104]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
E
I
S
K
L
A
I
E
A
L
E
D
I
-
K
G
K
D
I
I
E
L
D
T
S
K
L
--
T
S
L
--
F
--
Q
R
M
I
V
A
T
G
D
S
N
R
Q
V
K
A
L
A
N
S
V
Q
V
K
L
K
E
A
G
V
D
I
V
G
S
E
G
H
E
S
--------
G
E
W
V
L
V
D
-
A
G
D
---
V
V
---
V
H
V
M
L
-
P
A
V
R
D
Y
Y
--
D
I
E
A
L
W
G
G
Q
K
P
S
F
A
V
G
A
A
K
P
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
15
PsiBlast_CBE
85.90
36%
-143
- C4 -
4WCW
3
?
D:
[24-114]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
D
V
V
V
I
D
V
S
G
Q
--
L
V
I
--
T
--
D
C
F
V
I
A
S
G
S
N
E
R
Q
V
N
A
I
V
D
E
V
E
E
K
M
R
Q
A
G
Y
R
P
A
R
R
E
G
A
R
E
--------
G
R
W
T
L
L
D
-
Y
R
D
---
I
V
---
V
H
I
Q
H
-
Q
D
D
R
N
F
A
--
A
L
D
R
L
W
G
D
C
P
V
V
P
V
D
L
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
16
PsiBlast_CBE
85.03
36%
-145
- C4 -
4WCW
2
?
C:
[24-114]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
D
V
V
V
I
D
V
S
G
Q
--
L
V
I
--
T
--
D
C
F
V
I
A
S
G
S
N
E
R
Q
V
N
A
I
V
D
E
V
E
E
K
M
R
Q
A
G
Y
R
P
A
R
R
E
G
A
R
E
--------
G
R
W
T
L
L
D
-
Y
R
D
---
I
V
---
V
H
I
Q
H
-
Q
D
D
R
N
F
A
--
A
L
D
R
L
W
G
D
C
P
V
V
P
V
D
L
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
19
HHSearch
84.28
28%
-119
- C4 -
2ID1
1
IOJAP_CHRVO
A:
[1-114]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
E
I
Q
E
I
S
K
L
A
I
E
A
L
E
D
I
-
K
G
K
D
I
I
E
L
D
T
S
K
L
--
T
S
L
--
F
--
Q
R
M
I
V
A
T
G
D
S
N
R
Q
V
K
A
L
A
N
S
V
Q
V
K
L
K
E
A
G
V
D
I
V
G
S
E
G
H
E
S
--------
G
E
W
V
L
V
D
-
A
G
D
---
V
V
---
V
H
V
M
L
-
P
A
V
R
D
Y
Y
--
D
I
E
A
L
W
G
G
Q
K
P
S
F
A
V
G
A
A
K
P
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
PsiBlast_PDB
83.89
36%
-137
- C4 -
4WCW
4
?
A:
[24-114]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
D
V
V
V
I
D
V
S
G
Q
--
L
V
I
--
T
--
D
C
F
V
I
A
S
G
S
N
E
R
Q
V
N
A
I
V
D
E
V
E
E
K
M
R
Q
A
G
Y
R
P
A
R
R
E
G
A
R
E
--------
G
R
W
T
L
L
D
-
Y
R
D
---
I
V
---
V
H
I
Q
H
-
Q
D
D
R
N
F
A
--
A
L
D
R
L
W
G
D
C
P
V
V
P
V
D
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
17
PsiBlast_CBE
83.38
36%
-145
- C4 -
4WCW
3
?
B:
[24-113]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
D
V
V
V
I
D
V
S
G
Q
--
L
V
I
--
T
--
D
C
F
V
I
A
S
G
S
N
E
R
Q
V
N
A
I
V
D
E
V
E
E
K
M
R
Q
A
G
Y
R
P
A
R
R
E
G
A
R
E
--------
G
R
W
T
L
L
D
-
Y
R
D
---
I
V
---
V
H
I
Q
H
-
Q
D
D
R
N
F
A
--
A
L
D
R
L
W
G
D
C
P
V
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
69.36
39%
-27
- C4 -
3UPS
-
IOJAP_ZYMMO
A:
[19-117]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
L
K
L
V
T
D
S
L
D
D
D
-
Q
A
L
E
I
A
T
I
P
L
A
G
K
--
S
S
I
--
A
--
D
Y
-
V
I
A
S
G
R
S
S
R
Q
V
T
A
-
A
Q
K
L
A
D
R
I
K
A
A
T
G
Y
V
S
K
I
E
G
L
P
A
--------
A
D
W
V
L
L
D
-
A
G
D
---
I
I
---
I
H
L
F
R
-
P
E
V
R
S
F
Y
--
N
L
E
R
M
W
G
F
G
D
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10
PsiBlast_PDB
56.49
42%
-23
- C4 -
3IHP
-
UBP5_HUMAN
A:
[356-395]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
N
S
---
V
V
---
Q
V
L
F
S
I
P
D
F
Q
R
K
Y
VD
K
L
E
K
I
F
Q
N
A
P
T
D
P
T
Q
D
F
S
T
Q
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
44
Fugue
52.78
15%
-68
* C2 *
1W9G
-
ERH_HUMAN
A:
[1-102]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
S
H
--------------------
T
I
L
L
V
Q
P
T
--
K
R
P
--
E
--
G
R
T
Y
A
D
Y
E
S
V
N
E
C
M
E
G
V
C
K
M
Y
E
E
H
L
K
R
M
N
P
N
S
P
S
I
T
Y
D
I
S
--------
Q
L
F
D
F
I
D
D
L
A
D
---
L
S
---
C
L
V
Y
R
-
A
D
T
Q
T
Y
Q
--
P
Y
N
K
D
W
I
K
E
K
I
Y
V
L
L
R
R
Q
A
Q
Q
A-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
45
Fugue
51.81
18%
-50
- C2 -
2J37
1
SRP54_CANFA
W:
[8-488]
RKITSALRSLSNATIINEEVLNAMLKEVCTALLEADVNIKLVKQLRENVKSAIDLEEMASGLNKRKMIQHAVFKELVKLVDPGVKAWTPTKGNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKFKNENFEIIIVDTSGRH
K
Q
E
D
S
L
F
E
E
M
L
Q
V
A
N
A
I
-
Q
P
D
--------------------
N
I
V
Y
V
M
D
A
S
I
G
Q
A
C
E
A
Q
A
K
A
F
K
D
K
V
D
V
A
S
V
I
V
T
K
L
D
G
H
A
K
---------
G
G
G
A
L
S
-
A
V
A
---
A
T
KSP
I
I
F
I
G
-
T
G
E
H
I
D
---
D
F
E
P
-
F
K
T
Q
P
F
I
S
K
L
L
G
M
G
D
IEGLIDKVNELKLDDNEALIEKLKHGQFTLRDMYEQFQNIMKMGPFSQILGMIPGFGTDFMSKGNEQESMARLKKLMTIMDSMNDQELDSTDGAKVFSKQPGRIQRVARGSGVSTRDVQELLTQYTKFAQMVKKMGGIKGLFKGGDMSKNVSQSQMAKLNQQMAKMMDPRVLHHMGGMAGLQSMMRQFQ
43
Fugue
48.46
17%
-66
- C3 -
4DQJ
2
?
A:
[14-150]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------S
R
V
R
F
T
T
A
E
V
D
S
A
V
A
R
I
S
Q
K
I
-
G
V
P
A
S
Y
Y
Q
F
L
I
P
I
E
N
F
V
V
--
A
--
G
G
F
E
T
T
V
S
G
S
F
R
G
L
G
Q
F
N
R
Q
T
W
D
G
L
R
R
L
G
R
N
L
P
A
F
E
E
G
S
A
Q
L
N
A
S
L
Y
A
I
G
F
L
Y
L
E
-
N
K
R
---
A
Y
---
E
A
S
F
--
K
G
R
V
F
T
H
--
E
I
A
Y
L
Y
H
N
Q
G
A
P
A
A
E
Q
Y
L
T
S
GRLVYP---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
32
HHSearch
47.04
11%
-103
- C4 -
3RPF
2
MOAE_HELPY
A:
[60-118]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
W
F
E
K
W
H
H
K
A
K
D
L
--
G
V
V
L
K
M
A
H
S
L
G
D
--
V
L
I
--
G
QS
S
F
L
C
V
S
M
G
K
N
R
K
N
A
L
E
L
Y
E
N
F
I
E
D
F
K
H
N
A
P
I
W
K
Y
D
L
I
H
N
K
--------
R
I
Y
A
K
E
R
-
S
H
P
---
L
K
---
G
S
G
L
L
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
38
HHSearch
44.28
10%
-127
- C4 -
2KO1
-
?
A:
[17-66]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
M
T
N
Q
I
T
G
V
I
S
K
F
-
D
T
-
N
I
R
T
I
V
L
N
A
K
--
D
G
I
--
F
--
T
C
N
L
M
I
F
V
K
N
T
D
K
L
T
T
L
M
D
K
L
R
K
V
Q
G
V
F
T
V
E
R
L
S
N
L
E
H
H
H
--------
H
H
H
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
31
HHSearch
43.65
14%
-88
* C4 *
2WP4
-
MOAE1_MYCTU
A:
[68-127]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
L
M
S
I
I
G
R
C
E
D
K
A
E
G
V
R
V
A
V
A
H
R
T
G
E
--
L
Q
I
GD
A
--
A
V
V
I
G
A
S
A
P
H
R
A
E
A
F
D
A
A
R
M
C
I
E
L
L
K
Q
E
V
P
I
W
K
K
E
F
S
S
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
25
HHSearch
43.58
12%
-96
- C4 -
2Q5W
1
MOAE_STAAN
E:
[59-119]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
K
L
A
Q
I
G
D
E
I
N
E
K
W
P
G
T
I
T
S
I
V
H
R
I
G
P
--
L
Q
I
SD
I
--
A
V
L
I
A
V
S
S
P
H
R
K
D
A
Y
R
A
N
E
Y
A
I
E
R
I
K
E
I
V
P
I
W
K
K
E
I
W
E
D
G
--------
S
K
W
Q
G
H
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
49
Fugue
41.88
15%
-44
- C3 -
3V69
-
KHDC3_MOUSE
A:
[2-117]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
S
L
K
R
F
Q
T
L
V
--
P
L
D
H
K
-
Q
G
T
L
F
E
I
I
G
E
P
K
L
--
P
K
-------
W
F
H
V
E
C
L
E
D
P
K
R
L
Y
V
E
P
R
L
L
E
I
M
F
G
K
D
G
E
H
I
P
H
L
E
S
M
L
H
--------
T
L
I
H
V
N
V
-
W
G
P
E
R
R
A
E
---
I
W
I
F
G
-
P
P
P
F
R
R
D
--
V
D
R
M
L
T
D
L
A
H
Y
C
R
M
K
L
M
E
I
E
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------