@TOME V2.3
(Nov 2016)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : gbs1909: (2015-12-11 )
MDVLIIEDDPMVEFIHRNYLEKLNYFQNIYSTASQTQAIAYLNDIKIQLVLLDIHIKEGNGLELLKLLRNQHQNTEVIVISAANEAHTVKEAFHLGIVDYLIKPFTFERFESSIEKFLNHYHTFEADKIYQDNIDHFQKIDSGWLEGEVKLDEKGLSEITYQHILDAIQELEQPFTIQELAKCSQFSHVSVRKYIAYMEEKGLLTSQQIYTKVGRPYKVYKLIKKT
Atome Classification :
(20 SA)
.........10........20........30........40--........50........60........70--........80........90........100.......110.......120......--.130.......140.......150.......160.......170........180...---....190.......200.---......210.......220....-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
M
D
V
L
I
IEDD
P
M
V
E
F
I
H
R
N
Y
L
E
K
L
N
Y
F
Q
N
I
Y
S
TASQ
T
Q
A
I
A
Y
--
L
N
D
I
K
I
Q
L
V
L
L
D
I
H
I
KEGN
G
L
E
L
L
K
L
L
R
NQ--HQNT
E
V
I
V
I
SAANE
A
H
T
V
K
E
A
F
H
L
G
I
V
D
Y
L
IKP
F
T
F
E
R
F
E
S
S
I
E
K
F
L
N
H
YHTF
E
A
D
K
--
I
Y
Q
D
N
I
D
H
F
Q
K
I
DSGWLEG
E
V
K
LDEK
G
L
S
E
I
T
Y
Q
H
I
L
D
A
I
Q
E
-
L
EQPF
T
I
Q
E
L
A
K
C
SQ---FS
H
V
S
V
R
K
Y
I
A
Y
M
E
EKGL---L
T
S
Q
Q
I
Y
T
KVGR
P
Y
K
V
Y
K
L
I
KKT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
49
Fugue
87.33
26%
-119
- C5 -
1NY5
8
?
A:
[1-384]
M
N
V
L
V
I
E
D
D
K
V
F
R
G
L
L
E
E
Y
L
S
M
K
G
I
--
K
V
E
S
A
E
R
G
K
E
A
Y
K
L
--
L
S
E
K
H
F
N
V
V
L
L
D
L
L
L
P
D
V
N
G
L
E
I
L
K
W
I
K
E
R
--
S
P
E
T
E
V
I
V
I
T
G
H
G
T
I
K
T
A
V
E
A
M
K
M
G
A
Y
D
F
L
T
K
P
C
M
L
E
E
I
E
L
T
I
N
K
A
I
E
H
R
K
L
R
K
E
N
E
--
L
L
R
R
E
K
D
L
-------------
K
E
E
E
Y
V
F
E
S
P
K
M
K
E
I
L
E
K
I
K
K
-
I
S
C
A
--------------------
E
C
P
V
L
I
T
G
E
S
G
V
G
K
E
V
V
A
R
L
I
H
K
L
S
D
R
S
K
E
P
F
V
A
L
N
V
A
SIP
R
D
I
F
E
A
E
L
FGYEKGAFTGAV
S
S
K
E
G
F
F
E
L
A
DG
G
T
L
F
L
D
EIGELS
L
E
A
Q
A
K
L
L
R
V
I
E
SG
K
F
Y
R
LGGRK
E
I
E
V
N
V
R
I
L
A
A
T
NRN
I
K
E
L
V
K
E
GKFR
E
D
L
Y
Y
R
L
G
V
I
E
I
E
I
P
P
LRERKED
I
I
P
L
A
N
H
F
L
K
K
F
S
R
K
Y
AKEVEGFT
K
S
A
Q
E
L
L
L
S
YPWYGN
V
R
E
L
K
N
V
I
E
R
A
V
L
F
SEGKFID
R
G
E
L
S
C
L
V
27
HHSearch
72.16
20%
-101
- C5 -
1A04
-
NARL_ECOLI
A:
[8-210]
-
T
I
L
L
I
D
D
H
P
M
L
R
T
G
V
K
Q
L
I
S
M
A
P
D
I
T
V
V
G
E
A
S
N
G
E
Q
G
I
E
L
--
A
E
S
L
D
P
D
L
I
L
L
D
L
N
M
P
G
M
N
G
L
E
T
L
D
K
L
R
E
K
--
S
L
S
G
R
I
V
V
F
S
V
S
N
H
E
E
D
V
V
T
A
L
K
R
G
A
D
G
Y
L
L
K
D
M
E
P
E
D
L
L
K
A
L
H
Q
A
A
A
G
E
M
V
L
S
-
E
A
--
L
T
P
V
L
A
A
S
L
------------
E
R
D
V
N
Q
L
T
P
R
E
-
R
D
I
L
K
L
I
A
----
Q
G
L
P
N
K
M
I
A
R
R
L
D
---
I
T
E
S
T
V
K
V
H
V
K
H
M
L
K
K
M
K
---
L
K
S
R
V
E
A
A
V
W
V
H
Q
E
R
I
F
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
13
PsiBlast_PDB
71.87
26%
-143
- C5 -
1NAT
-
SP0F_BACSU
A:
[6-119]
--
I
L
I
V
D
D
Q
Y
G
I
R
I
L
L
N
E
V
F
N
K
E
G
Y
--
Q
T
F
Q
A
A
N
G
L
Q
A
L
D
I
--
V
T
K
E
R
P
D
L
V
L
L
D
M
K
I
P
G
M
D
G
I
E
I
L
K
R
M
K
V
I
--
D
E
N
I
R
V
I
I
M
T
A
Y
G
E
L
D
M
I
Q
E
S
K
E
L
G
A
L
T
H
F
A
K
P
F
D
I
D
E
I
R
D
A
V
K
K
Y
L
P
L
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
PsiBlast_PDB
69.83
26%
-148
- C5 -
1PEY
1
SP0F_BACSU
A:
[6-119]
--
I
L
I
V
D
D
Q
S
G
I
R
I
L
L
N
E
V
F
N
K
E
G
Y
--
Q
T
F
Q
A
A
N
G
L
Q
A
L
D
I
--
V
T
K
E
R
P
D
L
V
L
L
D
M
K
I
P
G
M
D
G
I
E
I
L
K
R
M
K
V
I
--
D
E
N
I
R
V
I
I
M
T
A
Y
G
E
L
D
M
I
Q
E
S
K
E
L
G
A
L
T
H
F
A
K
P
F
D
I
D
E
I
R
D
A
V
K
K
Y
L
P
L
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10
PsiBlast_PDB
69.62
26%
-144
- C5 -
3Q15
1
SP0F_BACSU
C:
[8-121]
--
I
L
I
V
D
D
Q
Y
G
I
R
I
L
L
N
E
V
F
N
K
E
G
Y
--
Q
T
F
Q
A
A
N
G
L
Q
A
L
D
I
--
V
T
K
E
R
P
D
L
V
L
L
D
M
K
I
P
G
M
D
G
I
E
I
L
K
R
M
K
V
I
--
D
E
N
I
R
V
I
I
M
T
A
Y
G
E
L
D
M
I
Q
E
S
K
E
L
G
A
L
T
H
F
A
K
P
F
D
I
D
E
I
R
D
A
V
K
K
Y
L
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
12
PsiBlast_PDB
68.47
26%
-156
- C5 -
1FSP
-
SP0F_BACSU
A:
[6-119]
--
I
L
I
V
D
D
Q
Y
G
I
R
I
L
L
N
E
V
F
N
K
E
G
Y
--
Q
T
F
Q
A
A
N
G
L
Q
A
L
D
I
--
V
T
K
E
R
P
D
L
V
L
L
D
M
K
I
P
G
M
D
G
I
E
I
L
K
R
M
K
V
I
--
D
E
N
I
R
V
I
I
M
T
A
Y
G
E
L
D
M
I
Q
E
S
K
E
L
G
A
L
T
H
F
A
K
P
F
D
I
D
E
I
R
D
A
V
K
K
Y
L
P
L
K
S
N
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
PsiBlast_PDB
68.25
26%
-144
- C5 -
1SRR
1
SP0F_BACSU
A:
[6-119]
--
I
L
I
V
D
D
Q
S
G
I
R
I
L
L
N
E
V
F
N
K
E
G
Y
--
Q
T
F
Q
A
A
N
G
L
Q
A
L
D
I
--
V
T
K
E
R
P
D
L
V
L
L
D
M
K
I
P
G
M
D
G
I
E
I
L
K
R
M
K
V
I
--
D
E
N
I
R
V
I
I
M
T
A
Y
G
E
L
D
M
I
Q
E
S
K
E
L
G
A
L
T
H
F
A
K
P
F
D
I
D
E
I
R
D
A
V
K
K
Y
L
P
L
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
14
PsiBlast_PDB
67.80
26%
-148
- C5 -
2FSP
-
SP0F_BACSU
A:
[6-119]
--
I
L
I
V
D
D
Q
Y
G
I
R
I
L
L
N
E
V
F
N
K
E
G
Y
--
Q
T
F
Q
A
A
N
G
L
Q
A
L
D
I
--
V
T
K
E
R
P
D
L
V
L
L
D
M
K
I
P
G
M
D
G
I
E
I
L
K
R
M
K
V
I
--
D
E
N
I
R
V
I
I
M
T
A
Y
G
E
L
D
M
I
Q
E
S
K
E
L
G
A
L
T
H
F
A
K
P
F
D
I
D
E
I
R
D
A
V
K
K
Y
L
P
L
K
S
N
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
17
PsiBlast_PDB
66.86
27%
-130
- C5 -
3TMY
1
CHEY_THEMA
A:
[5-117]
--
V
L
I
V
D
D
A
A
F
M
R
M
M
L
K
D
I
I
T
K
A
G
Y
E
V
A
G
E
A
T
N
G
R
-
E
A
V
E
K
--
Y
K
E
L
K
P
D
I
V
T
M
D
I
T
M
P
E
M
N
G
I
D
A
I
K
E
I
M
K
I
--
D
P
N
A
K
I
I
V
C
S
A
M
G
Q
Q
A
M
V
I
E
A
I
K
A
G
A
K
D
F
I
V
K
P
F
Q
P
S
R
V
V
E
A
L
N
K
V
S
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
20
PsiBlast_PDB
66.81
27%
-128
- C5 -
2TMY
-
CHEY_THEMA
A:
[5-117]
--
V
L
I
V
D
D
A
A
F
M
R
M
M
L
K
D
I
I
T
K
A
G
Y
E
V
A
G
E
A
T
N
G
R
-
E
A
V
E
K
--
Y
K
E
L
K
P
D
I
V
T
M
D
I
T
M
P
E
M
N
G
I
D
A
I
K
E
I
M
K
I
--
D
P
N
A
K
I
I
V
C
S
A
M
G
Q
Q
A
M
V
I
E
A
I
K
A
G
A
K
D
F
I
V
K
P
F
Q
P
S
R
V
V
E
A
L
N
K
V
S
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
37
HHSearch
66.74
20%
-87
- C5 -
2GWR
3
MTRA_MYCTU
A:
[7-207]
-
R
I
L
V
V
D
D
D
A
S
L
A
E
M
L
T
I
V
L
R
G
-
E
G
F
D
T
-
A
V
I
G
D
G
T
Q
A
L
T
A
--
V
R
E
L
R
P
D
L
V
L
L
D
L
M
L
P
G
M
N
G
I
D
V
C
R
V
L
R
A
D
---
S
G
V
P
I
V
M
L
T
A
K
T
D
T
V
D
V
V
L
G
L
E
S
G
A
D
D
Y
I
M
K
P
F
K
P
K
E
L
V
A
R
V
R
A
R
L
R
R
N
D
D
E
P
A
E
M
L
S
I
A
D
V
E
I
D
V
P
A
H
K
V
------
T
R
N
G
E
Q
I
S
L
T
P
L
E
-
F
D
L
L
V
A
L
A
R
K
P
R
Q
V
F
T
R
D
V
L
L
E
Q
V
W
GYR
A
D
T
R
L
V
N
V
H
V
Q
R
L
R
A
K
V
E
---
K
D
P
E
N
P
T
V
V
L
T
V
R
G
V
G
Y
K
A
G
P
P
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
66.42
35%
-138
- C5 -
1NY5
1
?
A:
[1-118]
M
N
V
L
V
I
E
D
D
K
----
V
F
R
G
L
L
E
E
Y
L
S
M
K
G
I
K
V
E
S
A
E
R
G
K
E
A
Y
K
L
L
S
E
K
H
F
N
V
V
L
L
D
L
L
L
P
D
V
N
G
L
E
I
L
K
W
I
K
E
R
--
S
P
E
T
E
V
I
V
I
T
G
H
G
T
I
K
T
A
V
E
A
M
K
M
G
A
Y
D
F
L
T
K
P
C
M
L
E
E
I
E
L
T
I
N
K
A
I
E
H
R
K
L
R
K
E
N
E
--
L
L
R
R
E
K
D
L
K
E
E
E
Y
V
F
E
S
P
K
M
K
E
I
L
E
K
I
K
K
I
S
C
A
E
C
P
V
L
I
T
G
E
-
S
G
V
G
K
E
V
V
A
R
L
I
H
K
L
---
S
D
R
S
K
E
P
F
V
A
L
N
V
A
S
I
P
R
---
D
I
F
E
A
E
L
F
G
Y
E
K
G
A
F
T
G
A
V
S
S
K
E
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
48
HHSearch
66.32
27%
-131
- C5 -
1SRR
1
SP0F_BACSU
A:
[5-119]
-
K
I
L
I
V
D
D
Q
S
G
I
R
I
L
L
N
E
V
F
N
K
E
-
G
Y
Q
T
-
F
Q
A
A
N
G
L
Q
A
L
D
I
--
V
T
K
E
R
P
D
L
V
L
L
D
M
K
I
P
G
M
D
G
I
E
I
L
K
R
M
K
V
I
--
D
E
N
I
R
V
I
I
M
T
A
Y
G
E
L
D
M
I
Q
E
S
K
E
L
G
A
L
T
H
F
A
K
P
F
D
I
D
E
I
R
D
A
V
K
K
Y
L
P
L
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
18
PsiBlast_PDB
66.28
27%
-125
- C5 -
4TMY
1
CHEY_THEMA
A:
[5-117]
--
V
L
I
V
D
D
A
A
F
M
R
M
M
L
K
D
I
I
T
K
A
G
Y
E
V
A
G
E
A
T
N
G
R
-
E
A
V
E
K
--
Y
K
E
L
K
P
D
I
V
T
M
D
I
T
M
P
E
M
N
G
I
D
A
I
K
E
I
M
K
I
--
D
P
N
A
K
I
I
V
C
S
A
M
G
Q
Q
A
M
V
I
E
A
I
K
A
G
A
K
D
F
I
V
K
P
F
Q
P
S
R
V
V
E
A
L
N
K
V
S
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
PsiBlast_PDB
66.22
26%
-145
- C5 -
1F51
1
SP0F_BACSU
E:
[4-117]
--
I
L
I
V
D
D
Q
S
G
I
R
I
L
L
N
E
V
F
N
K
E
G
Y
--
Q
T
F
Q
A
A
N
G
L
Q
A
L
D
I
--
V
T
K
E
R
P
D
L
V
L
L
D
M
K
I
P
G
M
D
G
I
E
I
L
K
R
M
K
V
I
--
D
E
N
I
R
V
I
I
M
T
A
Y
G
E
L
D
M
I
Q
E
S
K
E
L
G
A
L
T
H
F
A
K
P
F
D
I
D
E
I
R
D
A
V
K
K
Y
L
P
L
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
29
HHSearch
65.90
18%
-103
- C5 -
1YIO
4
?
A:
[6-190]
-
T
V
F
V
V
D
D
D
M
S
V
R
E
G
L
R
N
L
L
R
S
A
-
G
F
E
V
-
E
T
F
D
C
A
S
T
F
L
E
H
--
R
R
P
E
Q
H
G
C
L
V
L
D
M
R
M
P
G
M
S
G
I
E
L
Q
E
Q
L
T
A
I
--
S
D
G
I
P
I
V
F
I
T
A
H
G
D
I
P
M
T
V
R
A
M
K
A
G
A
I
E
F
L
P
K
P
F
E
E
Q
A
L
L
D
A
I
E
Q
G
L
Q
L
N
A
E
R
R
-
Q
---
A
R
E
-----
T
Q
D
Q
--------
L
E
Q
L
F
S
S
L
T
G
R
E
-
Q
Q
V
L
Q
L
T
I
----
R
G
L
M
N
K
Q
I
A
G
E
L
G
---
I
A
E
V
T
V
K
V
H
R
H
N
I
M
Q
K
L
N
---
V
R
S
L
A
N
L
V
H
L
V
E
K
Y
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
19
PsiBlast_PDB
65.63
27%
-131
- C5 -
1TMY
-
CHEY_THEMA
A:
[5-117]
--
V
L
I
V
D
D
A
A
F
M
R
M
M
L
K
D
I
I
T
K
A
G
Y
E
V
A
G
E
A
T
N
G
R
-
E
A
V
E
K
--
Y
K
E
L
K
P
D
I
V
T
M
D
I
T
M
P
E
M
N
G
I
D
A
I
K
E
I
M
K
I
--
D
P
N
A
K
I
I
V
C
S
A
M
G
Q
Q
A
M
V
I
E
A
I
K
A
G
A
K
D
F
I
V
K
P
F
Q
P
S
R
V
V
E
A
L
N
K
V
S
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
16
PsiBlast_PDB
65.59
27%
-121
- C5 -
4IGA
3
CHEY_THEMA
A:
[8-120]
--
V
L
I
V
D
D
A
A
F
M
R
M
M
L
K
D
I
I
T
K
A
G
Y
E
V
A
G
E
A
T
N
G
R
-
E
A
V
E
K
--
Y
K
E
L
K
P
D
I
V
T
M
D
I
T
M
P
E
M
N
G
I
D
A
I
K
E
I
M
K
I
--
D
P
N
A
K
I
I
V
C
S
A
M
G
Q
Q
A
M
V
I
E
A
I
K
A
G
A
K
D
F
I
V
K
P
F
Q
P
S
R
V
V
E
A
L
N
K
V
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
21
PsiBlast_CBE
65.42
35%
-138
- C5 -
1NY5
2
?
B:
[1-118]
M
N
V
L
V
I
E
D
D
K
----
V
F
R
G
L
L
E
E
Y
L
S
M
K
G
I
K
V
E
S
A
E
R
G
K
E
A
Y
KL
L
S
E
K
H
F
N
V
V
L
L
D
L
L
L
P
D
V
N
G
L
E
I
L
K
W
I
K
E
R
--
S
P
E
T
E
V
I
V
I
T
G
H
G
T
I
K
T
A
V
E
A
M
K
M
G
A
Y
D
F
L
T
K
P
C
M
L
E
E
I
E
L
T
I
N
K
A
I
E
H
R
K
L
R
K
E
N
E
--
L
L
R
R
E
K
D
L
K
E
E
E
Y
V
F
E
S
P
K
M
K
E
I
L
E
K
I
K
K
I
S
C
A
E
C
P
V
L
I
T
G
E
-
S
G
V
G
K
E
V
V
A
R
L
I
H
K
L
---
S
D
R
S
K
E
P
F
V
A
L
N
V
A
S
I
P
R
---
D
I
F
E
A
E
L
F
G
Y
E
K
G
A
F
T
G
A
V
S
S
K
E
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
47
HHSearch
65.21
24%
-133
- C5 -
3CNB
-
?
A:
[67-188]
-
S
I
L
I
I
E
D
D
K
E
F
A
D
M
L
T
Q
F
L
E
N
L
F
P
Y
A
K
I
K
I
A
Y
N
P
F
D
A
G
D
L
--
L
H
T
V
K
P
D
V
V
M
L
D
L
M
M
V
G
M
D
G
F
S
I
C
H
R
I
K
S
T
PA
T
A
N
I
I
V
I
A
M
T
G
A
L
T
D
D
N
V
S
R
I
V
A
L
G
A
E
T
C
F
G
K
P
L
N
F
T
L
L
E
K
T
I
K
Q
L
V
E
Q
K
K
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------