@TOME V2.3
(Nov 2016)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : gbs1934: (2015-12-12 )
MYRLLIVEDEYLIRKWLRYAIDYQSLNILVVGEAKDGKEGAQLIQEEQPDIVLSDINMPIMTAFDMFEATKGQSYAKIILSGYADFPNAQSAIHYGVLEFLTKPLEKQALIDCLKTIMARIEEHKEKHLQEHTELYLPLPQANDQVPEVIKDMLAWIHSHFHGKIVISQLAHDLGYSESYLYTVTKKHLHITLSDYINQYRINQAIQLMFREPDLMVYQIAEAVGIYDYRYFDRVFKKYLGQTVKAFKEEHIFKQMD
Atome Classification :
(20 SA)
.........10........20........30........40........50........60..---....-..70.--.--....----..80.........90........100.......110.......120.......--130....-------....140.......150.......160--------........170...-----...----.----180---....------....190.-------------------------......200----........210.......220.......230.......240.......250.....-----------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
M
Y
R
L
L
I
VE
D
E
Y
L
I
R
K
W
L
R
Y
A
IDYQ
S
L
N
I
L
V
V
GEAKDG
K
E
G
A
Q
L
I
Q
EEQP
D
I
V
L
SDIN
M
P
I
M
T
A
---
F
D
M
F
-
E
ATKG--
Q
--
S
Y
A
K
----
I
I
L
-SGYADFPN
A
Q
S
A
I
H
Y
G
V
L
E
F
L
TK
P
L
E
K
Q
A
L
I
D
C
L
K
T
I
M
A
R
I
E
E
H
K
E
K
H
L
--
Q
-
E
H
T
E
L
-------
Y
L
PLPQAND
Q
V
P
E
V
I
K
D
M
L
A
W
I
H
SHF---------H
G
K
I
V
I
S
Q
L
A
H
DLG-----YSE----
S
----
Y
L
----
Y
T
V
T------K
K
H
L
H
I
T
L
-------------------------
S
D
Y
I
N
Q
Y
R
-----
I
N
Q
A
I
Q
L
M
FREP
D
L
M
V
Y
Q
I
A
E
A
VGI
Y
D
Y
R
Y
F
D
R
V
F
K
K
Y
L
G
Q
T
V
K
A
F
K
E
E
H
I
F
KQMD-----------------------------------------------------------------------------------
39
HHSearch
82.04
19%
-97
- C2 -
1YS7
4
PRRA_MYCTU
A:
[8-212]
-
P
R
V
L
V
V
D
D
D
S
D
V
L
A
S
L
E
R
G
L
R
L
S
--
G
F
E
-
V
A
T
A
V
D
G
A
E
A
L
R
S
A
T
E
N
R
P
D
A
I
V
L
D
I
N
M
P
V
L
D
G
---
V
S
V
V
-
T
A
L
R
A
--
M
DN
D
V
P
V
----
C
V
L
-
S
A
R
S
S
V
D
D
R
V
A
G
L
E
A
G
A
D
D
Y
L
V
K
P
F
V
L
A
E
L
V
A
R
V
K
A
L
L
R
R
R
G
S
T
A
T
S
S
S
E
T
I
-
T
V
G
P
L
EVDIPGR
R
A
R
V
N
G
V
D
V
D
L
T
K
R
E
F
D
L
L
A
V
L
A
E
H
K
---------
T
A
V
L
S
R
A
Q
L
L
E
L
V
W
GYDFA-
D
T
N
V
V
D
V
----
F
I
----
G
Y
L
R
------
R
K
L
E
A
G
P
R
-------------------------
L
L
H
T
V
R
G
V
-----
G
F
V
L
R
M
Q
------------------------------------------------------------------------------------------------------------------------------------
48
Fugue
81.10
15%
-104
- C2 -
1NY5
8
?
A:
[1-384]
-
M
N
V
L
V
I
E
D
D
K
V
F
R
G
L
L
E
E
Y
L
S
M
K
G
I
K
V
E
S
A
---
E
R
G
K
E
A
Y
K
L
L
S
E
K
H
F
N
V
V
L
L
D
L
L
L
P
D
V
N
G
---
L
E
I
L
-
K
W
I
K
E
--
R
SP
E
T
E
V
----
I
V
I
-
T
G
H
G
T
I
K
T
A
V
E
A
M
K
M
G
A
Y
D
F
L
T
K
P
C
M
L
E
E
I
E
L
T
I
N
K
A
I
E
H
R
K
L
R
K
E
N
E
L
--
L
-
R
R
E
K
D
L
K
-----
E
E
E
Y
V
F
E
S
P
K
M
K
E
I
L
E
K
I
K
K
I
S
C
A
E
C
P
V
L
I
T
G
E
S
G
V
G
K
E
V
V
A
R
L
I
H
K
L
S
-----
D
R
S
----
K
----
E
P
----
F
V
A
L
N
VASIP
R
D
I
F
E
A
E
L
FGYEKGAFTGAV
S
S
K
E
G
F
F
E
L
A
DG
G
T
L
F
L
D
E
I
G
ELS
L
E
A
Q
A
K
L
L
R
V
I
E
S
G
K
F
Y
R
L
G
G
R
K
E
I
E
V
-
N
V
R
I
L
A
A
T
N
R
N
I
K
E
L
V
K
E
G
K
F
R
E
D
L
Y
Y
R
L
G
V
I
E
I
E
I
P
P
LRERKED
I
I
P
L
A
N
H
F
L
K
K
F
S
R
K
Y
AKEVEGFT
K
S
A
Q
E
L
L
L
S
YPWYGN
V
R
E
L
K
N
V
I
E
R
A
V
L
F
SEGKFID
R
G
E
L
S
C
L
V
42
HHSearch
79.69
24%
-102
- C2 -
1A04
-
NARL_ECOLI
A:
[7-198]
-
A
T
I
L
L
I
D
D
H
P
M
L
R
T
G
V
K
Q
L
I
S
M
A
P
-
D
I
T
V
V
G
E
A
S
N
G
E
Q
G
I
E
L
A
E
S
L
D
P
D
L
I
L
L
D
L
N
M
P
G
M
N
G
---
L
E
T
L
-
D
K
L
R
E
--
K
SL
S
G
R
I
----
V
V
F
-
S
V
S
N
H
E
E
D
V
V
T
A
L
K
R
G
A
D
G
Y
L
L
K
D
M
E
P
E
D
L
L
K
A
L
H
Q
A
A
A
G
E
M
V
L
S
E
A
L
T
--
P
V
L
A
A
S
L
-----------
E
R
D
V
N
Q
L
T
P
R
E
R
D
I
L
K
L
I
A
-------------
Q
G
L
P
N
K
M
I
A
R
R
L
D
-----
I
T
E
----
S
----
T
V
K
V
H
V
K
H
M
L
------
K
K
M
K
L
K
S
R
-------------------------
V
E
A
A
V
W
V
H
-----
Q
E
R
I
F
--------------------------------------------------------------------------------------------------------------------------------------
21
PsiBlast_CBE
78.55
33%
-100
- C2 -
4TMY
1
CHEY_THEMA
B:
[4-118]
--
R
V
L
I
V
D
D
A
A
F
M
R
M
M
L
K
D
I
I
T
K
A
G
Y
E
--
V
A
G
E
A
T
N
G
R
E
A
V
E
K
Y
K
E
L
K
P
D
I
V
T
M
D
I
T
M
P
E
M
N
G
---
I
D
A
I
K
E
I
M
K
I
--
D
--
P
N
A
K
----
I
I
V
C
S
A
M
G
Q
Q
A
M
V
I
E
A
I
K
A
G
A
K
D
F
I
V
K
P
F
Q
P
S
R
V
V
E
A
L
N
K
V
S
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
22
PsiBlast_CBE
78.34
33%
-104
- C2 -
3TMY
1
CHEY_THEMA
B:
[4-118]
--
R
V
L
I
V
D
D
A
A
F
M
R
M
M
L
K
D
I
I
T
K
A
G
Y
E
--
V
A
G
E
A
T
N
G
R
E
A
V
E
K
Y
K
E
L
K
P
D
I
V
T
M
D
I
T
M
P
E
M
N
G
---
I
D
A
I
K
E
I
M
K
I
--
D
--
P
N
A
K
----
I
I
V
C
S
A
M
G
Q
Q
A
M
V
I
E
A
I
K
A
G
A
K
D
F
I
V
K
P
F
Q
P
S
R
V
V
E
A
L
N
K
V
S
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10
PsiBlast_PDB
78.31
33%
-105
- C2 -
1TMY
-
CHEY_THEMA
A:
[4-118]
--
R
V
L
I
V
D
D
A
A
F
M
R
M
M
L
K
D
I
I
T
K
A
G
Y
E
--
V
A
G
E
A
T
N
G
R
E
A
V
E
K
Y
K
E
L
K
P
D
I
V
T
M
D
I
T
M
P
E
M
N
G
---
I
D
A
I
K
E
I
M
K
I
--
D
--
P
N
A
K
----
I
I
V
C
S
A
M
G
Q
Q
A
M
V
I
E
A
I
K
A
G
A
K
D
F
I
V
K
P
F
Q
P
S
R
V
V
E
A
L
N
K
V
S
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
37
HHSearch
77.43
21%
-101
- C2 -
1YIO
4
?
A:
[5-185]
-
P
T
V
F
V
V
D
D
D
M
S
V
R
E
G
L
R
N
L
L
R
S
A
G
--
F
E
-
V
E
T
F
D
C
A
S
T
F
L
E
H
R
R
P
E
Q
H
G
C
L
V
L
D
M
R
M
P
G
M
S
G
---
I
E
L
Q
-
E
Q
L
T
A
--
I
SD
G
I
P
I
----
V
F
I
-
T
A
H
G
D
I
P
M
T
V
R
A
M
K
A
G
A
I
E
F
L
P
K
P
F
E
E
Q
A
L
L
D
A
I
E
Q
G
L
Q
L
N
A
E
R
R
Q
A
R
E
--
T
--
Q
-----------
D
Q
L
E
Q
L
F
S
S
L
T
G
R
E
Q
Q
V
L
Q
L
T
I
-------------
R
G
L
M
N
K
Q
I
A
G
E
L
G
-----
I
A
E
----
V
T
V
K
V
H
R
----
H
N
I
M
------
Q
K
L
N
V
R
S
L
-------------------------
A
N
L
V
H
L
V
E
-----
K
Y
-----------------------------------------------------------------------------------------------------------------------------------------
12
PsiBlast_PDB
77.24
33%
-107
- C2 -
1U0S
-
CHEY_THEMA
Y:
[4-118]
--
R
V
L
I
V
D
D
A
A
F
M
R
M
M
L
K
D
I
I
T
K
A
G
Y
E
--
V
A
G
E
A
T
N
G
R
E
A
V
E
K
Y
K
E
L
K
P
D
I
V
T
M
D
I
T
M
P
E
M
N
G
---
I
D
A
I
K
E
I
M
K
I
--
D
--
P
N
A
K
----
I
I
V
C
S
A
M
G
Q
Q
A
M
V
I
E
A
I
K
A
G
A
K
D
F
I
V
K
P
F
Q
P
S
R
V
V
E
A
L
N
K
V
S
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
PsiBlast_PDB
77.10
33%
-98
- C2 -
4IGA
3
CHEY_THEMA
A:
[7-121]
--
R
V
L
I
V
D
D
A
A
F
M
R
M
M
L
K
D
I
I
T
K
A
G
Y
E
--
V
A
G
E
A
T
N
G
R
E
A
V
E
K
Y
K
E
L
K
P
D
I
V
T
M
D
I
T
M
P
E
M
N
G
---
I
D
A
I
K
E
I
M
K
I
--
D
--
P
N
A
K
----
I
I
V
C
S
A
M
G
Q
Q
A
M
V
I
E
A
I
K
A
G
A
K
D
F
I
V
K
P
F
Q
P
S
R
V
V
E
A
L
N
K
V
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
PsiBlast_PDB
76.98
33%
-95
- C2 -
3TMY
1
CHEY_THEMA
A:
[4-118]
--
R
V
L
I
V
D
D
A
A
F
M
R
M
M
L
K
D
I
I
T
K
A
G
Y
E
--
V
A
G
E
A
T
N
G
R
E
A
V
E
K
Y
K
E
L
K
P
D
I
V
T
M
D
I
T
M
P
E
M
N
G
---
I
D
A
I
K
E
I
M
K
I
--
D
--
P
N
A
K
----
I
I
V
C
S
A
M
G
Q
Q
A
M
V
I
E
A
I
K
A
G
A
K
D
F
I
V
K
P
F
Q
P
S
R
V
V
E
A
L
N
K
V
S
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
13
PsiBlast_PDB
76.21
27%
-133
- C2 -
4HNR
1
?
A:
[2-120]
M
A
K
V
L
A
V
D
D
S
I
S
I
R
Q
M
V
S
H
T
L
Q
D
A
G
Y
E
---
V
E
T
A
A
D
G
R
E
A
L
A
K
A
Q
K
A
R
F
D
V
I
I
S
D
V
N
M
P
V
M
T
G
---
F
E
F
V
-
K
A
V
R
M
--
Q
--
S
Q
Y
K
FT
P
I
L
M
L
-
T
T
E
T
S
P
E
K
K
Q
E
G
K
A
V
G
A
T
G
W
L
V
K
P
F
N
P
E
T
L
L
K
T
L
Q
R
V
L
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
PsiBlast_PDB
76.17
33%
-96
- C2 -
4TMY
1
CHEY_THEMA
A:
[4-118]
--
R
V
L
I
V
D
D
A
A
F
M
R
M
M
L
K
D
I
I
T
K
A
G
Y
E
--
V
A
G
E
A
T
N
G
R
E
A
V
E
K
Y
K
E
L
K
P
D
I
V
T
M
D
I
T
M
P
E
M
N
G
---
I
D
A
I
K
E
I
M
K
I
--
D
--
P
N
A
K
----
I
I
V
C
S
A
M
G
Q
Q
A
M
V
I
E
A
I
K
A
G
A
K
D
F
I
V
K
P
F
Q
P
S
R
V
V
E
A
L
N
K
V
S
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
PsiBlast_PDB
75.48
33%
-101
- C2 -
2TMY
-
CHEY_THEMA
A:
[4-118]
--
R
V
L
I
V
D
D
A
A
F
M
R
M
M
L
K
D
I
I
T
K
A
G
Y
E
--
V
A
G
E
A
T
N
G
R
E
A
V
E
K
Y
K
E
L
K
P
D
I
V
T
M
D
I
T
M
P
E
M
N
G
---
I
D
A
I
K
E
I
M
K
I
--
D
--
P
N
A
K
----
I
I
V
C
S
A
M
G
Q
Q
A
M
V
I
E
A
I
K
A
G
A
K
D
F
I
V
K
P
F
Q
P
S
R
V
V
E
A
L
N
K
V
S
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
14
PsiBlast_PDB
75.31
27%
-112
- C2 -
4H60
2
?
A:
[2-120]
M
A
K
V
L
A
V
D
D
S
I
S
I
R
Q
M
V
S
H
T
L
Q
D
A
G
Y
E
---
V
E
T
A
A
D
G
R
E
A
L
A
K
A
Q
K
A
R
F
D
V
I
I
S
D
V
N
M
P
V
M
T
G
---
F
E
F
V
-
K
A
V
R
M
--
Q
--
S
Q
Y
K
FT
P
I
L
M
L
-
T
T
E
T
S
P
E
K
K
Q
E
G
K
A
V
G
A
T
G
W
L
V
K
P
F
N
P
E
T
L
L
K
T
L
Q
R
V
L
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
19
PsiBlast_PDB
74.52
27%
-99
- C2 -
4LE0
3
DESR_BACSU
A:
[5-121]
M
I
S
I
F
I
A
E
D
Q
Q
M
L
L
G
A
L
G
S
L
L
N
L
E
D
-
D
M
E
V
V
G
K
G
T
T
G
Q
D
A
V
D
F
V
K
K
R
Q
P
D
V
C
I
M
D
I
E
M
P
G
K
T
G
---
L
E
A
A
-
E
E
L
K
D
--
T
--
G
C
K
I
----
I
I
L
-
T
T
F
A
R
P
G
Y
F
Q
R
A
I
K
A
G
V
K
G
Y
L
L
K
D
S
P
S
E
E
L
A
N
A
I
R
S
V
M
N
G
K
R
I
Y
A
P
E
L
M
--
E
-
D
L
Y
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
28
HHSearch
73.56
29%
-137
- C1 -
3OOU
1
?
A:
[5-107]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------
P
I
I
Q
N
V
L
S
Y
I
T
E
H
F
---------
S
E
G
M
S
L
K
T
L
G
N
D
F
H
-----
I
N
A
----
V
----
Y
L
----
G
Q
L
F
------
Q
K
E
M
G
E
H
F
-------------------------
T
D
Y
L
N
R
Y
R
-----
V
N
Y
A
K
E
E
L
L
-
Q
T
K
D
N
L
T
I
I
A
G
K
S
G
Y
T
D
M
A
Y
F
Y
R
Q
F
K
K
H
T
G
E
T
P
N
R
Y
R
K
I
H
Q
----------------------------------------------------------------------------------------
17
PsiBlast_PDB
72.94
30%
-134
- C1 -
3OOU
1
?
A:
[6-107]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
I
Q
N
V
L
S
Y
I
T
E
H
F
---------
S
E
G
M
S
L
K
T
L
G
N
D
F
H
-----
I
N
A
----
V
----
Y
L
----
G
Q
L
F
------
Q
K
E
M
G
E
H
F
-------------------------
T
D
Y
L
N
R
Y
R
-----
V
N
Y
A
K
E
E
L
L
Q
T
K
D
N
L
T
I
-
I
A
G
K
S
G
Y
T
D
M
A
Y
F
Y
R
Q
F
K
K
H
T
G
E
T
P
N
R
Y
R
K
I
H
Q
----------------------------------------------------------------------------------------
18
PsiBlast_PDB
72.77
27%
-102
- C2 -
4LDZ
5
DESR_BACSU
A:
[5-121]
M
I
S
I
F
I
A
E
D
Q
Q
M
L
L
G
A
L
G
S
L
L
N
L
E
D
-
D
M
E
V
V
G
K
G
T
T
G
Q
D
A
V
D
F
V
K
K
R
Q
P
D
V
C
I
M
D
I
E
M
P
G
K
T
G
---
L
E
A
A
-
E
E
L
K
D
--
T
--
G
C
K
I
----
I
I
L
-
T
T
F
A
R
P
G
Y
F
Q
R
A
I
K
A
G
V
K
G
Y
L
L
K
D
S
P
S
E
E
L
A
N
A
I
R
S
V
M
N
G
K
R
I
Y
A
P
E
L
M
--
E
-
D
L
Y
S
E
-------
A
N
P
L
T
D
R
E
K
E
V
L
E
L
V
A
D
G
K
N
T
K
E
I
A
Q
---------
E
L
S
I
K
S
G
T
V
R
N
Y
I
S
-----
M
I
L
----
E
----
K
L
----
E
V
K
N
------
R
I
E
A
I
T
R
S
-------------------------
K
E
------------------------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
72.50
26%
-109
- C2 -
3CU5
-
?
A:
[4-131]
--
R
I
L
I
V
D
D
E
K
L
T
R
D
G
L
I
A
N
I
N
W
K
A
L
S
F
D
Q
I
D
Q
A
D
D
G
I
N
A
I
Q
I
A
L
K
H
P
P
N
V
L
L
T
D
V
R
M
P
R
M
D
G
---
I
E
L
V
-
D
N
I
L
K
L
Y
P
--
D
C
S
V
----
I
F
M
-
S
G
Y
S
D
K
E
Y
L
------
R
A
I
R
Y
V
E
K
P
I
D
P
S
E
I
M
D
A
L
K
Q
S
I
Q
T
V
L
Q
H
Q
A
Q
Q
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
PsiBlast_PDB
72.24
32%
-105
- C2 -
3HDG
2
?
A:
[9-120]
--
K
I
L
I
V
E
D
D
T
D
A
R
E
W
L
S
T
I
I
---
S
N
H
F
P
E
V
W
S
A
G
D
G
E
E
G
E
R
L
F
G
L
H
A
P
D
V
I
I
T
D
I
R
M
P
K
L
G
G
L
E
M
L
D
R
I
-
K
A
G
G
A
--
K
--
P
Y
V
-----
I
V
I
-
S
A
F
S
E
M
K
Y
F
I
K
A
I
E
L
G
V
H
L
F
L
P
K
P
I
E
P
G
R
L
M
E
T
L
E
D
F
R
H
I
K
L
A
K
E
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------