@TOME V2.3
(Nov 2016)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : gbs2063: (2015-12-13 )
MRVNITLEHKESGERLYLTSKNKRNTPDRLQLKKYSPKLRKHVVFTEVK
Atome Classification :
(20 SA)
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------.........10.......--..20-------.....-....30.----.......40........---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
R
V
N
I
T
L
EHK-ESG
E
R
L
Y
--
L
TS--------KNKRN-TP
D
R
L
Q
L
----
K
KY
S
P
K
L
R
K
H
V
V
F
TEVK---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
85.26
40%
-16
* C18 *
3J5S
-
RL33_ECOLI
H:
[2-50]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
R
E
K
I
K
L
V
S
S
-
A
G
T
G
H
F
Y
--
T
T
T
--------
K
N
K
R
T
-
K
P
E
K
L
E
L
----
K
K
F
D
P
V
V
R
Q
H
V
I
Y
K
E
A
K
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
38
Fugue
75.03
28%
-20
- C14 -
3W5N
12
?
A:
[3-1031]
A
L
R
V
T
SPSVEYVQRPLGLDAA
H
P
R
L
S
W
P
M
A
S
AAPGRRQS
A
Y
Q
V
R
V
A
SSAAGLSHPDVWDSGKVVSDDSVLVPYAG
P
P
L
K
P
R
T
R
Y
F
W
S
V
R
V
W
D
ADGGASEWSA
P
S
W
W
E
T
G
LMGASQWS
A
K
W
I
S
A
P
APLTEAPSLEG
S
S
W
I
W
FPEGEPANSAPA
A
T
R
W
F
R
R
T
V
D
L
P
D
DIT
G
A
T
L
A
I
S
A
DN
V
Y
A
V
S
V
DGAEV
A
R
T
D
LEADNEGWR
R
P
A
V
I
DVLDHVHS
G
N
N
T
L
A
V
S
A
S
N
ASV
G
P
A
G
W
I
C
V
L
V
L
T
T
AS
G
E
K
K
I
F
SDAS
W
K
S
T
DHEPADGWREPDFDDSGWPAAKVAAAWGAGPWGR
V
A
P
V
A
S
A
A
N
Q
L
R
H
E
F
R
L
P
H
K
K
V
S
R
A
R
L
Y
--
A
T
A
L
G
L
Y
E
A
H
L
N
G
R
R
V
-
G
R
D
Q
L
A
P
----
G
W
T
D
Y
R
K
R
V
Q
Y
Q
T
Y
D
V
T
SSVRP
G
A
N
A
L
A
A
Y
V
A
PGWYAGNVGMFGPHQYGE
R
P
A
L
L
A
Q
L
E
V
E
Y
ADG
T
S
E
R
I
T
S
GPD
W
R
A
A
SGPIVSADLLS
G
E
T
Y
D
ARKETAGWTSPGFDDRA
W
L
A
V
R
GADNDVPE
Q
I
V
A
QVDGPVRIA
K
E
L
P
AR
K
V
T
E
PKPG
V
F
V
L
D
LGQNM
V
G
S
V
R
L
R
V
S
G
D
AG
T
T
V
R
L
R
H
A
EVLNPDGTIYTANLRSAAA
T
D
T
Y
T
L
KGQGE
E
T
Y
E
P
R
F
T
F
H
G
F
R
Y
V
E
V
T
GFPGKPSTTS
V
T
G
R
V
M
H
TS
A
P
F
T
F
E
F
E
T
NV
P
M
L
N
K
L
H
S
N
I
T
W
G
Q
R
G
N
FLSVPTDTPARDERLGW
T
G
D
I
N
V
F
A
P
T
A
A
Y
T
MES
A
R
F
L
T
K
W
L
V
D
L
R
D
A
QTSD
G
A
F
T
DVAPAVGNLGNGVAGWGD
A
G
V
T
V
P
W
A
L
Y
Q
A
YGD
R
Q
V
L
A
D
A
L
P
S
V
H
A
W
L
R
Y
L
E
K
H
SDGLLRPADGYGDWLNVSDETP
K
D
V
I
A
T
A
Y
F
A
H
S
A
D
L
A
A
R
M
A
T
E
L
GKDA
A
P
Y
T
D
L
F
T
R
I
R
K
A
F
Q
T
A
YVASDGKVKGDT
Q
S
A
Y
V
L
T
L
S
M
NLVPDAL
R
K
A
A
A
D
R
L
V
A
L
I
E
A
K
D
WHLSTG
F
L
G
T
P
R
L
L
P
V
L
T
D
T
GH
T
D
V
A
Y
R
L
L
H
QRTFPS
W
G
Y
P
I
D
K
GSTTMWERWDSIQPDGGFQTPEMNSFNHYAYGSV
G
E
W
M
Y
A
NIAGIAPGRAGYR
Q
V
V
I
R
P
R
P
G
GEVT
S
A
R
A
T
F
ASLH
G
P
V
S
T
R
W
Q
Q
R
SG
G
F
V
L
T
C
S
V
P
P
N
T
T
A
E
V
W
I
P
A
DHPDRVQHTHGTFVRAEDGCA
V
F
E
V
G
S
G
S
H
R
F
T
V
K
44
Fugue
57.91
19%
23
- C20 -
2HG7
-
XKDW_BACSU
A:
[1-60]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MI
L
Y
D
A
I
M
Y
K
Y
P
N
A
V
S
R
K
D
F
E
L
R
-
N
D
G
N
G
S
Y
--
I
E
K
--------
W
N
L
R
A
P
L
P
T
Q
A
E
L
----
E
T
W
W
E
E
L
Q
K
N
P
P
Y
E
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
24
HHSearch
56.89
44%
13
- C6 -
3TWL
-
FPG_ARATH
A:
[270-278]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
Y
V
P
E
L
Q
K
L
Y
G
K
D
A
E
K
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
54.70
37%
33
- C16 -
3RCC
2
?
A:
[78-109]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
E
H
A
-
K
K
G
M
K
V
Y
--
L
T
D
--------
K
S
K
V
Y
-
T
Y
T
I
T
E
I
----
S
K
V
T
P
E
H
V
E
V
I
D
D
T
P
G
K
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
28
HHSearch
49.95
31%
-16
- C18 -
1QF8
1
CSK2B_HUMAN
A:
[127-142]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
P
G
E
A
M
V
----
K
L
Y
C
P
K
C
M
D
V
Y
T
P
K
S
S
R
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
42
Fugue
47.04
12%
-10
* C20 *
2L8K
-
A:
[1-123]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GLTATLAAL
T
D
D
D
F
Q
F
L
S
D
-
V
L
D
C
R
A
V
--
R
S
A
--------
M
N
L
R
A
-
A
L
T
S
F
Q
V
----
A
Q
Y
R
N
I
L
N
A
S
L
Q
V
D
R
D
A
A
R
S
R
R
L
M
A
K
L
A
D
FA
V
E
Q
E
V
T
A
G
D
R
V
V
V
IDGLD
R
M
A
H
F
KDD
L
V
L
V
PL
T
T
K
V
V
GG
S
R
C
T
I
C
D
VVKEE----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
20
HHSearch
46.60
13%
-39
- C17 -
3P0K
2
VP33_NPVAC
A:
[150-164]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
F
F
----
I
L
Q
C
A
M
C
R
D
H
Y
M
N
V
K
G
F
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
26
HHSearch
41.25
23%
84
- C2 -
3W0F
1
NEIL3_MOUSE
A:
[273-282]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
Y
F
C
P
H
C
Q
K
H
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
40
Fugue
38.35
22%
25
- C15 -
1KVE
-
?
?:
[19-81]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------W
S
L
R
W
R
M
QKSTTIAA
I
A
G
C
S
GAATFGGLAGG
I
V
G
C
I
A
A
G
I
L
A
I
L
Q
G
F
E
V
N
W
H
N
G
-
G
G
G
D
R
S
N
P
V------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
29
HHSearch
38.24
15%
-13
- C19 -
1YSH
-
RL37A_ORYSJ
D:
[26-49]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
K
K
M
E
V
SQHS
K
Y
F
C
E
F
C
G
K
F
A
V
K
R
K
A
V
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
21
HHSearch
37.89
25%
71
- C11 -
3U6P
1
?
A:
[266-273]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
H
Y
C
P
R
C
Q
R
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
37
Fugue
34.85
42%
88
- C17 -
4XAI
-
?
P:
[1-21]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Y
A
D
-
T
P
A
L
R
Q
L
----
S
E
Y
A
---
R
P
H
V
A
F
S
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
22
HHSearch
32.40
33%
39
- C13 -
2AD6
-
DHM2_METME
B:
[19-33]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Y
P
E
K
I
A
G
----
S
K
Y
D
P
K
H
D
P
V
E
L
N
K
Q
E
E
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
43
Fugue
31.59
14%
56
- C17 -
2ZP6
-
?
A:
[1-21]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
--
I
V
E
--------
Q
C
C
A
S
-
V
C
S
L
Y
Q
L
----
E
N
Y
C
N
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
31
HHSearch
29.79
11%
17
* C19 *
3CC2
-
RL37A_HALMA
Z:
[55-73]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
E
M
N
E
----
D
H
A
C
P
N
C
G
E
D
R
V
D
R
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
17
HHSearch
29.11
10%
13
- C8 -
2MRE
1
B:
[9-18]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
C
P
V
C
G
V
N
I
P
E
S
H
I
N
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
HHSearch
28.77
38%
27
- C19 -
2APO
1
NOP10_METJA
B:
[17-29]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
----
K
E
I
C
P
K
C
G
E
K
T
V
I
P
K
P
P
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
16
HHSearch
28.70
25%
81
- C7 -
1K82
1
FPG_ECOLI
A:
[261-268]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
F
Y
C
R
Q
C
Q
K
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
12
HHSearch
28.02
10%
23
- C3 -
3VHS
2
WRIP1_HUMAN
A:
[8-17]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
C
P
V
C
Q
Q
M
M
P
A
A
H
I
N
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------