@TOME V2.3
(Nov 2016)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : bsu00490: (2016-06-01 )
MEVTDVRLRRVNTDGRMRAIASITLDHEFVVHDIRVIDGNNGLFVAMPSKRTPDGEFRDITHPINSSTRGKIQDAVLNEYHRLGDTEALEFEEAGAS
Atome Classification :
(20 SA)
--------------------------------------------------------------------------------------------------------------------------------------------------...--......10-.....---------------...20....----....30.......----.40........-50------..---.......60...----.....70.......--.------80..--......90......-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
--------------------------------------------------------------------------------------------------------------------------------------------------MEV--
T
D
V
R
L
R
R
V-NTDG
R
---------------
M
R
A
I
A
S
I
T
L----D
H
E
F
V
V
H
D
I
R
V
I
D----GNN
G
L
F
V
AMPS-K-------RT---PDGEFRDITHPI----NSSTRG
K
I
Q
D
A
V
L
N
--
E
------
Y
H
RL--GDTE
A
L
E
F
E
EAGAS-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
PsiBlast_CBE
94.97
97%
-118
- C5 -
2IA9
2
SP5G_BACSU
D:
[5-100]
---------------------------------------------------------------------------------------------------------------------------------------------------
E
V
--
T
D
V
R
L
R
R
V
-
N
T
D
G
R
---------------
M
R
A
I
A
S
I
T
L
----
D
H
E
F
V
V
H
D
I
R
V
I
D
----
G
N
N
G
L
F
V
A
M
P
S
-
K
-------
R
T
---
P
D
G
E
F
R
D
I
T
H
P
I
----
N
S
S
T
R
G
K
I
Q
D
A
V
L
N
--
E
------
Y
H
R
L
--
G
D
T
E
A
L
E
F
E
E
A
G
A
S
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
12
HHSearch
93.90
100%
-129
- C5 -
2IA9
2
SP5G_BACSU
A:
[4-95]
--------------------------------------------------------------------------------------------------------------------------------------------------
M
E
V
--
T
D
V
R
L
R
R
V
-
N
T
D
G
R
---------------
M
R
A
I
A
S
I
T
L
----
D
H
E
F
V
V
H
D
I
R
V
I
D
----
G
N
N
G
L
F
V
A
M
P
S
-
K
-------
R
T
---
P
D
G
E
F
R
D
I
T
H
P
I
----
N
S
S
T
R
G
K
I
Q
D
A
V
L
N
--
E
------
Y
H
R
L
--
G
D
T
E
A
L
E
F
E
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
PsiBlast_CBE
92.77
97%
-116
- C5 -
2IA9
1
SP5G_BACSU
B:
[5-96]
---------------------------------------------------------------------------------------------------------------------------------------------------
E
V
--
T
D
V
R
L
R
R
V
-
N
T
D
G
R
---------------
M
R
A
I
A
S
I
T
L
----
D
H
E
F
V
V
H
D
I
R
V
I
D
----
G
N
N
G
L
F
V
A
M
P
S
-
K
-------
R
T
---
P
D
G
E
F
R
D
I
T
H
P
I
----
N
S
S
T
R
G
K
I
Q
D
A
V
L
N
--
E
------
Y
H
R
L
--
G
D
T
E
A
L
E
F
E
E
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
91.93
97%
-127
- C5 -
2IA9
2
SP5G_BACSU
A:
[5-95]
---------------------------------------------------------------------------------------------------------------------------------------------------
E
V
--
T
D
V
R
L
R
R
V
-
N
T
D
G
R
---------------
M
R
A
I
A
S
I
T
L
----
D
H
E
F
V
V
H
D
I
R
V
I
D
----
G
N
N
G
L
F
V
A
M
P
S
-
K
-------
R
T
---
P
D
G
E
F
R
D
I
T
H
P
I
----
N
S
S
T
R
G
K
I
Q
D
A
V
L
N
--
E
------
Y
H
R
L
--
G
D
T
E
A
L
E
F
E
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
13
HHSearch
84.84
64%
-137
- C5 -
2I9Z
2
SP5G_STAES
A:
[4-90]
--------------------------------------------------------------------------------------------------------------------------------------------------
M
K
V
--
T
D
V
R
L
R
K
I
-
Q
T
D
G
R
---------------
M
K
A
L
V
S
I
T
L
----
D
E
A
F
V
I
H
D
L
R
V
I
E
----
G
N
S
G
L
F
V
A
M
P
S
-
K
-------
R
T
---
P
D
G
E
F
R
D
I
A
H
P
I
----
N
S
D
M
R
Q
E
I
Q
D
A
V
M
K
--
V
------
Y
D
E
T
--
D
E
V
I
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
PsiBlast_PDB
84.60
70%
-145
- C5 -
2I9X
2
SP5G_STAES
A:
[5-83]
---------------------------------------------------------------------------------------------------------------------------------------------------
K
V
--
T
D
V
R
L
R
K
I
-
Q
T
D
G
R
---------------
M
K
A
L
V
S
I
T
L
----
D
E
A
F
V
I
H
D
L
R
V
I
E
----
G
N
S
G
L
F
V
A
M
P
S
-
K
-------
R
T
---
P
D
G
E
F
R
D
I
A
H
P
I
----
N
S
D
M
R
Q
E
I
Q
D
A
V
M
K
--
V
------
Y
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
14
HHSearch
84.18
71%
-142
- C5 -
2I9X
3
SP5G_STAES
A:
[4-86]
--------------------------------------------------------------------------------------------------------------------------------------------------
M
K
V
--
T
D
V
R
L
R
K
I
-
Q
T
D
G
R
---------------
M
K
A
L
V
S
I
T
L
----
D
E
A
F
V
I
H
D
L
R
V
I
E
----
G
N
S
G
L
F
V
A
M
P
S
-
K
-------
R
T
---
P
D
G
E
F
R
D
I
A
H
P
I
----
N
S
D
M
R
Q
E
I
Q
D
A
V
M
K
--
V
------
Y
D
E
T
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
82.96
70%
-141
- C5 -
2I9Z
2
SP5G_STAES
A:
[5-83]
---------------------------------------------------------------------------------------------------------------------------------------------------
K
V
--
T
D
V
R
L
R
K
I
-
Q
T
D
G
R
---------------
M
K
A
L
V
S
I
T
L
----
D
E
A
F
V
I
H
D
L
R
V
I
E
----
G
N
S
G
L
F
V
A
M
P
S
-
K
-------
R
T
---
P
D
G
E
F
R
D
I
A
H
P
I
----
N
S
D
M
R
Q
E
I
Q
D
A
V
M
K
--
V
------
Y
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
PsiBlast_CBE
78.88
73%
-140
- C5 -
2I9X
3
SP5G_STAES
B:
[5-79]
---------------------------------------------------------------------------------------------------------------------------------------------------
K
V
--
T
D
V
R
L
R
K
I
-
Q
T
D
G
R
---------------
M
K
A
L
V
S
I
T
L
----
D
E
A
F
V
I
H
D
L
R
V
I
E
----
G
N
S
G
L
F
V
A
M
P
S
-
K
-------
R
T
---
P
D
G
E
F
R
D
I
A
H
P
I
----
N
S
D
M
R
Q
E
I
Q
D
A
V
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10
PsiBlast_CBE
76.26
73%
-140
- C5 -
2I9Z
3
SP5G_STAES
B:
[5-79]
---------------------------------------------------------------------------------------------------------------------------------------------------
K
V
--
T
D
V
R
L
R
K
I
-
Q
T
D
G
R
---------------
M
K
A
L
V
S
I
T
L
----
D
E
A
F
V
I
H
D
L
R
V
I
E
----
G
N
S
G
L
F
V
A
M
P
S
-
K
-------
R
T
---
P
D
G
E
F
R
D
I
A
H
P
I
----
N
S
D
M
R
Q
E
I
Q
D
A
V
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
40
Fugue
38.72
14%
-60
- C3 -
1SGO
-
GSKIP_HUMAN
A:
[1-139]
--------------------------------------------------------------------------------------------------------------------------------------------------
M
E
T
D
C
N
P
M
E
L
S
S
M
-
S
G
F
E
E
GSELNGFEGTDMKD
M
R
L
E
A
E
A
V
V
N
----
D
V
L
F
A
V
N
N
M
F
V
S
K
S
L
R
C
A
D
D
V
A
Y
I
N
V
E
T
-
K
ER
N
R
Y
C
L
E
L
---
T
E
A
G
L
K
V
V
G
Y
A
-----
F
D
Q
V
D
D
H
L
Q
T
P
Y
H
E
--
T
------
V
Y
S
L
--
L
D
T
L
S
P
A
Y
R
E
A
F
G
N
A
L
L
Q
R
L
E
A
L
K
R
D
GQS----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
39
Fugue
38.20
18%
-26
- C3 -
3JTZ
1
?
A:
[2-78]
---------------------------------------------------------------------------------------------------------------------------------------------------
S
L
--
T
D
A
K
I
R
T
L
-
K
P
S
D
K
-----------------------------------
P
F
K
V
S
D
----
S
H
-
G
L
Y
L
L
V
K
P
-
G
-------
G
S
---
R
H
W
Y
L
K
Y
R
I
S
-----------
G
K
E
S
R
I
A
L
G
--
A
------
Y
P
A
I
--
S
L
S
D
A
R
Q
Q
R
E
G
I
R
K
M
L
ALN--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
34
Fugue
38.00
18%
-59
* C3 *
1TTW
1
?
A:
[3-120]
---------------------------------------------------------------------------------------------------------------------------------------------T
Y
S
S
L
L
E
E
--
F
A
T
E
L
G
L
E
-
E
I
E
T
N
---------------
E
L
G
H
G
A
V
T
I
----
D
K
I
W
V
V
H
L
A
P
I
------
N
E
K
E
L
V
A
F
M
R
A
G
I
-------
L
T
---
G
Q
S
Q
L
Y
D
I
L
R
K
N
----
L
F
S
P
L
S
G
V
I
R
C
A
L
D
--
K
DD
H
W
L
L
W
S
Q
L
NI
N
D
T
S
G
T
Q
L
A
S
V
L
T
S
L
V
D
K
A
V
T
L
S----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
33
Fugue
35.64
25%
-38
- C2 -
4BQ2
7
?
A:
[2-747]
SHMLFDFENDQVPSN
I
H
F
L
N
A
R
A
S
I
E
T
Y
T
G
ING
E
P
S
K
G
L
K
L
A
M
QSKQHS
Y
T
G
L
A
I
V
P
EQPWDWSEFT
S
A
S
L
Y
F
D
I
V
S
V
G
D
H
S
T
Q
F
Y
L
D
V
T
D
QNG
A
V
F
T
R
S
I
D
I
P
V
G
K
M
Q
S
Y
Y
A
K
LSGHDLEVPDSGDVNDLNLASGLRSNPPTWTS
D
D
R
--
Q
F
V
W
M
W
G
V
K
N
L
D
-----------------
L
S
G
I
A
K
I
S
L
----
S
V
Q
S
A
M
H
D
K
T
V
I
I
----
D
N
---
I
R
I
Q
P
N
-
P
-------
P
Q
---
D
E
N
F
L
V
G
L
V
D
E
F
GQNA
K
V
D
Y
K
G
K
I
H
S
--
L
E
--
E
------
L
H
A
A
--
R
D
V
E
L
A
E
L
D
G
K
P
M
P
SRSKFGGWLAGPKLKATG
Y
F
R
T
E
K
I
NG
K
W
M
L
V
D
PEG
Y
P
Y
F
A
T
G
L
D
IIRLSNSSTMTGYDYDQAT
V
A
Q
R
S
ADDVTPEDSKGLMAVS
E
K
S
F
A
T
RHLAS
P
T
R
A
A
M
FN
W
L
P
D
YDHPLANH
Y
N
Y
R
RSAHSGPLK
R
G
E
A
Y
S
F
Y
S
A
N
L
E
R
K
YGETYPG
S
Y
L
D
K
W
R
E
V
T
V
D
R
M
L
N
W
GFT
S
L
G
N
WTDPAYYDNNR
I
P
F
F
A
N
G
W
VIGD
F
K
T
V
S
SGADFW
G
A
M
P
DVFD
P
E
F
K
V
R
A
M
E
T
A
R
V
V
S
E
E
I
KNSPWCV
G
V
F
I
D
NEKSFGRPDS
D
K
A
Q
Y
G
I
P
I
H
T
L
G
RPSEGV
P
T
R
Q
A
F
S
K
L
L
K
A
K
YKT
I
A
A
L
N
N
A
W
GLKLSS
W
A
E
F
D
L
GVDVKALPVT
D
T
L
R
A
D
Y
S
M
L
L
S
A
Y
A
D
Q
Y
F
K
V
V
H
G
A
V
E
H
Y
MPN
H
L
Y
L
G
ARFPDWGMP
M
E
V
V
K
A
A
A
K
YAD
V
V
S
Y
N
S
YKEGLPKQKWAFLAELD
K
P
S
I
I
G
E
F
H
I
G
A
MDHGSYHPGL
I
H
A
AS
Q
A
D
R
G
E
M
Y
K
D
Y
M
Q
S
V
I
D
NPYFV
G
A
H
W
FQYMDSPLTGRAYDGENYNVGFVDVTDTPY
Q
E
M
V
D
A
A
K
E
V
N
A
K
I
YTERL
36
Fugue
34.07
21%
-35
- C3 -
1YUA
-
?
?:
[1-65]
----------------------------------------------------------------------------------------------------------------------------------------------------
M
--
N
G
E
V
A
P
P
K
-
E
D
P
V
P
---------------
L
P
E
L
P
C
E
K
S
----
D
A
Y
F
V
L
R
D
---------
G
A
A
G
V
F
L
A
A
N
-----------------------
T
F
P
K
----
S
R
E
T
R
A
P
L
V
E
E
L
Y
R
--
F
------
R
D
R
L
--
P
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
41
Fugue
32.33
11%
-43
- C3 -
1O7I
-
SSB_SULSO
A:
[1-115]
----------------------------------------------------------------------------------------------------------------------------------------------MEEK
V
G
N
--
L
K
P
N
M
E
S
V
-
N
V
T
V
R
---------------
V
L
E
A
S
E
A
R
Q
I
Q
T
K
N
G
V
R
T
I
S
E
A
I
V
G
D
----
E
T
G
R
V
K
L
T
L
W
G
-
K
-------
H
A
GSI
K
E
G
Q
V
V
K
I
E
N
A
W
----
T
T
A
F
K
G
Q
V
Q
L
N
A
G
S
K
T
K
------
I
A
E
A
--
S
E
D
G
F
P
E
S
S
Q
I
P
E
N
TPTAP--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
17
HHSearch
30.97
11%
-40
- C5 -
1LLD
-
LDH2_BIFL2
A:
[272-309]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
D
I
C
M
S
V
P
T
-
L
-------
L
N
---
R
Q
G
V
N
N
T
I
N
T
P
V
----
S
D
K
E
L
A
A
L
K
R
S
A
E
T
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
23
HHSearch
30.15
11%
-37
- C5 -
1LDN
-
LDH_GEOSE
A:
[269-305]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
D
V
Y
I
G
V
P
A
-
V
-------
I
N
---
R
N
G
I
R
E
V
I
E
I
E
L
----
N
D
D
E
K
N
R
F
H
H
S
A
A
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
38
Fugue
29.10
33%
-67
- C4 -
3GS2
2
CBX7_HUMAN
B:
[1-30]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
V
T
V
T
D
I
T
A
--------
N
S
I
T
V
T
F
R
E
-
A
-------
Q
A
---
A
E
G
F
F
R
D
R
S
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
31
HHSearch
28.88
16%
-24
- C5 -
1HYH
-
DHL2_WEICO
A:
[259-295]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
M
G
M
Y
L
S
Y
P
A
-
I
-------
I
G
---
R
D
G
V
L
A
E
T
T
L
D
L
----
T
T
D
E
Q
E
K
L
L
Q
S
R
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------