@TOME V2.3
(Nov 2016)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : bsu00840: (2016-06-02 )
MICQECHERPATFHFTKVVNGEKIEVHICEQCAKENSDSYGISANQGFSIHNLLSGLLNMDSSFQNAGTQMFSHSEQISACPKCGMTFQQFRKIGRFGCSECYKTFHSNITPILRKVHSGNTVHAGKIPKRIGGNLHVRRQIDMLKKELESLIHQEEFENAAHVRDQIRLLEQSLKSTDSEEEQE
Atome Classification :
(20 SA)
--------------....--.--....10........20--........----30--.....--...40........50--.........60....-------------.--...70......--..80--..--......90...-------------.--....--100-..----.----.....110.....-..120....-.---...130-------------...--.....140........150.......160....-...170.......180...----------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
--------------M
I
C
Q
--
E
--
C
HERPA
T
F
H
F
T
K
VVNG--
E
K
I
E
V
H
I
C
----
E
Q
--
C
A
KEN--SDSYGISANQG
F
S
I
---
H
N
L
L
S
G
L
L
NMD
S
S
F
Q
-------------
N
--
A
G
T
Q
M
FSH
S
E
Q
--
I
SAC--PK--CGM
T
F
Q
Q
F
R
K
I
-------------
G
--RF
G
C
--
S
E
--
C
Y
----
K
----
T
F
HS
N
I
T
P
I
L
R
K
V-HSGN-TVHA-G---K
I
P
K
R
--------------IGG--N
L
H
V
R
R
Q
-
I
D
M
L
K
K
E
L
E
S
L
I
H
Q
E
E
F
E
N
A
A
H
V
R
D
-
Q
I
R
L
L
E
Q
S
LKSTDSEEEQE----------------------------------------------------------------------------------------------------------------------------------------------------------------
55
Fugue
73.03
17%
-63
- C2 -
4QCC
-
DGOA_ECOLI
A:
[5-274]
--------TKLP
L
I
A
I
L
R
--
G
--
I
T
P
D
E
A
L
A
H
V
G
A
V
I
D
A
GF
D
A
V
E
I
P
L
N
SPQ
W
E
Q
--
S
I
P
A
I
--
V
D
A
Y
G
D
K
A
L
I
G
A
G
T
VLK
P
E
Q
V
D
A
L
A
R
M
G
C
Q
L
I
V
T
P----------
N
--
I
H
S
E
V
I
R
R
A
V
G
Y
G
M
T
V
C
--
P
G
--
C
A
-
T
A
T
E
A
F
T
A
-------------
L
--
E
A
G
A
--
Q
A
--
L
K
IFPS
S
----
A
F
G
P
Q
Y
I
K
A
L
K
A
V
L
P
S
D
I
-
A
V
F
A
V
G
---
G
V
T
P
E
N
L
A
Q
W
I
D
A
GCA
G
A
G
L
G
S
--
D
L
Y
R
A
G
Q
S
V
E
R
T
A
Q
Q
A
A
A
F
V
K
A
Y
R
E
A
Q
K
Q
K
E
Q
R
-
Q
D
Q
K
S
A
Y
A
L
G
A
S
L
G
R
Y
M
E
N
S
L
K
E
Q
E
K
L
GIKLD
K
D
Q
L
I
A
G
V
Q
D
A
F
A
DKSKLS
D
Q
E
I
E
Q
T
L
Q
A
F
E
A-------------------------------------------------------------------------------------------------------------------
38
HHSearch
55.76
25%
-13
- C4 -
2DLQ
4
A:
[9-120]
---------------
E
C
P
--
T
--
C
H
K
K
F
L
S
K
Y
Y
L
K
V
H
N
R
KH
T
G
E
K
P
F
E
C
----
P
K
--
C
G
K
C
Y
--
F
R
K
E
N
--------------
L
L
E
H
E
A
R
N
C
-------------------------
M
N
R
S
E
Q
--
V
F
T
C
--
S
V
--
C
Q
E
T
F
R
R
R
M
E
L
R
L
H
M
V
S
H
T
GE---
M
--
P
Y
K
C
--
S
S
--
C
S
----
Q
----
Q
F
M
Q
K
-
K
D
L
Q
S
---
H
--
M
I
K
L
H
S
-
G
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
15
PsiBlast_PDB
55.12
32%
-15
- C3 -
3PXG
-
CLPC_BACSU
A:
[415-464]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
L
E
Q
K
-
L
D
E
V
R
K
E
K
D
A
A
V
Q
S
Q
E
F
E
K
A
A
S
L
R
D
T
E
Q
R
L
R
E
Q
V
E
D
T
K
K
S
W
K
E
K
Q
----------------------------------------------------------------------------------------------------------------------------------------------------------------
26
HHSearch
53.76
21%
4
- C4 -
2I13
10
ZSCA2_MOUSE
A:
[31-184]
---------------------------
F
S
R
S
D
H
L
A
E
H
Q
R
TH---
K
P
Y
K
C
----
P
E
--
C
G
K
S
F
--
S
D
K
K
D
--------------
L
T
R
H
Q
R
T
H
T
G
E
K
P
YKCPECGKSFSQ
R
A
N
L
R
A
H
Q
R
T
H
T
G
E
K
--
P
Y
A
C
--
P
E
--
C
G
K
S
F
S
Q
L
A
H
L
R
A
H
Q
R
T
H
T
GE---
K
--
P
Y
K
C
--
P
E
--
C
G
----
K
----
S
F
S
R
E
-
D
N
L
H
T
---
H
--
Q
-
R
T
H
T
-
G
---
E
K
P
Y
K
--------------
C
P
E
--
C
G
K
S
F
S
R
-
R
D
A
L
N
V
H
Q
R
T
H
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
46
Fugue
53.66
16%
22
- C3 -
3WPA
1
?
A:
[65-410]
NVAQGNQTN
V
G
D
A
L
T
A
L
D
--
N
--
A
I
N
T
A
A
T
T
S
K
S
T
V
S
N
G
--
Q
N
I
V
V
S
K
S
----
K
N
----
A
D
G
--
S
D
N
Y
E
V
S
T
A
K
D
L
T
V
---
D
S
V
K
A
G
----
D
T
V
L
N
-------------
N
--
A
G
I
T
I
G
N
N
A
V
V
--
L
N
-----
N
--
T
G
L
T
I
S
G
G
P
S
V
-------------
T
--
L
A
G
I
--
D
A
--
G
N
----
K
----
T
----
I
Q
N
V
A
N
A
V
-
N
A
T
D
-
A
V
N
K
-
G
---
Q
L
D
S
A
--------------
I
N
N
--
V
N
N
N
V
N
E
-
L
A
N
N
A
V
K
Y
D
D
A
S
K
D
K
I
T
L
G
G
G
A
T
G
T
-
T
I
T
N
V
K
D
G
T
V
A
Q
G
S
K
D
A
V
N
G
G
Q
L
W
N
V
Q
Q
Q
V
D
Q
N
T
T
D
I
S
N
I
K
N
D
I
N
N
GTVGLVQQAGKD
A
P
V
T
V
AKDTGGTTVNVAGTD
G
N
R
V
V
T
GVKEGAVNATSK
D
A
V
N
G
S
Q
L
N
T
T
N
Q
A
V
V
N
Y
L
GGG
A
G
Y
D
NITG
S
F
T
A
P
S
Y
T
V
GDSKYNN
V
G
G
A
I
D
A
L
N
Q
A
D
Q
A
L
N
S
K
I
D
N
V
S
N
K
L
D
N
A
F
R
I
T
N
N
RI
25
HHSearch
52.92
20%
-14
* C4 *
5EI9
6
?
F:
[7-113]
---------------
V
C
R
--
E
--
C
G
R
G
F
S
N
K
S
H
L
L
R
H
Q
R
TH
T
G
E
K
P
Y
V
C
----
R
E
--
C
G
R
G
F
--
R
D
K
S
H
--------------
L
L
R
H
Q
R
T
----------------------------
H
T
G
E
K
--
P
Y
V
C
--
R
E
--
C
G
R
G
F
R
D
K
S
N
L
LSHQRTHTGE---
K
--
P
Y
V
C
--
R
E
--
C
G
----
R
----
G
F
S
N
K
-
S
H
L
L
R
---
H
--
Q
-
R
T
H
T
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
PsiBlast_PDB
52.65
32%
-13
- C3 -
3PXI
-
CLPC_BACSU
A:
[416-519]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
E
Q
K
-
L
D
E
V
R
K
E
K
D
A
A
V
Q
S
Q
E
F
E
K
A
A
S
L
R
D
T
E
Q
R
L
R
E
Q
V
E
D
T
K
K
S
W
K
E
K
Q
----------------------------------------------------------------------------------------------------------------------------------------------------------------
36
HHSearch
50.70
19%
-35
- C4 -
1TF6
7
TF3A_XENLA
A:
[44-187]
---------------
P
C
K
--
E
EG
C
E
K
G
F
T
S
L
H
H
L
T
R
H
S
L
T
H
T
G
E
K
N
F
T
C
----
D
S
DG
C
D
L
R
F
--
T
T
K
A
N
--------------
M
K
K
H
F
N
R
----------------------------
F
H
N
I
K
IC
V
Y
V
C
HF
E
N
--
C
G
K
A
F
K
K
H
N
Q
L
K
V
H
Q
F
S
H
T
QQ---
L
--
P
Y
E
C
--
P
H
EG
C
D
----
K
----
R
F
S
L
P
-
S
R
L
K
R
---
H
--
E
-
K
V
H
A
-
G
Y
P
C
K
K
D
D
S
--------------
C
S
F
--
V
G
K
T
W
----
T
L
Y
L
K
H
V
A
E
C
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
PsiBlast_PDB
50.48
24%
-0
- C5 -
3OBR
7
A:
[291-394]
--------------------------------
Y
S
R
I
L
N
G
--
D
N
I
I
L
H
M
L
----
Y
N
--
S
R
K
Y
M
I
I
R
D
T
D
T
I
Y
A
T
Q
--
E
C
---
S
Q
N
C
V
Y
A
L
K
L
Q
S
N
L
G
-------------
N
--
Y
G
I
G
I
F
S
I
K
N
I
--
V
S
K
N
--
K
Y
--
C
S
Q
I
F
S
S
F
R
E
--------------
N
--
T
M
L
L
--
A
D
--
I
Y
----
K
PWRF
S
F
K
N
A
Y
T
P
V
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
32
HHSearch
50.28
23%
-10
- C4 -
2DLQ
4
A:
[5-116]
-------------------------------------------
S
S
G
V
E
C
----
P
T
--
C
H
K
K
F
--
L
S
K
Y
Y
--------------
L
K
V
H
N
R
K
----------------------------
H
T
G
E
K
--
P
F
E
C
--
P
K
--
C
G
K
C
Y
F
R
K
E
N
L
L
E
H
E
A
R
NCMNRSE
Q
--
V
F
T
C
--
S
V
--
C
Q
----
E
----
T
F
R
R
R
-
M
E
L
R
L
---
H
--
M
-
V
S
H
T
-
G
---
E
M
P
Y
K
--------------
C
S
S
--
C
S
Q
Q
F
M
Q
-
K
K
D
L
Q
S
H
M
I
K
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
50.23
32%
-14
- C3 -
3J3R
-
CLPC_BACSU
A:
[416-471]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
E
Q
K
-
L
D
E
V
R
K
E
K
D
A
A
V
Q
S
Q
E
F
E
K
A
A
S
L
R
D
T
E
Q
R
L
R
E
Q
V
E
D
T
K
K
S
W
K
E
K
Q
----------------------------------------------------------------------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
49.68
32%
-10
- C3 -
3J3U
-
CLPC_BACSU
A:
[416-471]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
E
Q
K
-
L
D
E
V
R
K
E
K
D
A
A
V
Q
S
Q
E
F
E
K
A
A
S
L
R
D
T
E
Q
R
L
R
E
Q
V
E
D
T
K
K
S
W
K
E
K
Q
----------------------------------------------------------------------------------------------------------------------------------------------------------------
47
Fugue
49.23
21%
-45
* C3 *
2D7D
-
?
B:
[1-38]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
E
R
Q
K
V
-
V
E
Q
M
E
H
E
M
K
E
A
A
K
A
L
D
F
E
R
A
A
E
L
R
D
-
L
L
L
E
L
K
A
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------
31
HHSearch
49.07
20%
-25
- C4 -
3W5K
4
SNAI1_HUMAN
B:
[154-254]
--------------
F
N
C
K
--
Y
--
C
N
K
E
Y
L
S
L
G
A
L
K
M
H
I
R
--
S
H
T
L
P
C
V
C
----
G
T
--
C
G
K
A
F
--
S
R
P
W
L
--------------
L
Q
G
H
V
R
T
----------------------------
H
T
G
----
P
F
S
C
--
P
H
--
C
S
R
A
F
A
D
R
S
N
L
R
A
H
L
Q
T
HSDV---
K
--
K
Y
Q
C
--
Q
A
--
C
A
----
R
----
T
F
S
R
M
-
S
L
L
H
K
---
H
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
54
Fugue
48.78
13%
-29
- C1 -
3KP7
-
?
A:
[1-151]
------------------------
M
V
R
R
I
E
D
H
I
S
F
L
E
K
F
--
I
N
D
V
N
T
L
T
----
A
K
--
L
L
K
D
L
--
Q
T
E
Y
G
I
S
A
E
Q
S
H
V
L
---
N
M
L
S
I
E
A
L
T
V
G
Q
I
T
E
-------------
K
--
Q
G
V
N
---------------------------------------------------------------------
K
A
A
V
S
R
R
V
K
K
L
-
L
N
A
E
-
L
V
K
L
-
K
---
I
I
K
L
S
--------------
N
K
G
--
K
K
Y
I
K
E
R
-
K
A
I
M
S
H
I
A
S
D
M
T
S
D
F
---
D
S
K
E
I
E
K
-
V
R
Q
V
L
E
I
I
D
Y
R
I
Q
S
Y
T
S
K
L
----------------------------------------------------------------------------------------------------------------------------------------------------------------
4
PsiBlast_PDB
47.96
32%
-8
- C3 -
3J3T
-
CLPC_BACSU
A:
[416-471]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
E
Q
K
-
L
D
E
V
R
K
E
K
D
A
A
V
Q
S
Q
E
F
E
K
A
A
S
L
R
D
T
E
Q
R
L
R
E
Q
V
E
D
T
K
K
S
W
K
E
K
Q
----------------------------------------------------------------------------------------------------------------------------------------------------------------
20
PsiBlast_PDB
46.38
24%
-6
* C5 *
3PME
1
?
A:
[284-387]
--------------------------------
Y
S
R
I
L
N
G
--
D
D
I
M
F
H
M
L
YDS
R
E
Y
--
M
I
I
R
D
--
T
D
T
--
I
Y
A
T
Q
G
G
Q
C
---
S
K
N
C
V
Y
A
L
K
L
Q
S
N
L
G
-------------
N
--
Y
G
I
G
I
F
S
I
K
N
I
--
V
S
Q
----
Y
--
C
S
Q
I
F
S
S
F
M
K
--------------
N
--
T
M
L
L
--
A
D
--
I
Y
----
K
PWRF
S
F
E
N
A
Y
T
P
V
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
PsiBlast_PDB
46.10
24%
7
- C5 -
3N7J
-
BXD_CLOBO
A:
[1146-1249]
--------------------------------
Y
S
R
I
L
N
G
--
D
N
I
I
L
H
M
L
----
Y
N
--
S
R
K
Y
M
I
I
R
D
T
D
T
I
Y
A
----------
Q
N
C
V
Y
A
L
K
L
Q
S
N
L
G
-------------
N
--
Y
G
I
G
I
F
S
I
K
N
I
--
V
S
K
N
--
K
Y
--
C
S
Q
I
F
S
S
F
R
E
--------------
N
--
T
M
L
L
--
A
D
--
I
Y
----
K
PWRF
S
F
K
N
A
Y
T
P
V
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10
PsiBlast_PDB
45.58
24%
1
- C5 -
3OGG
-
BXD_CLOBO
A:
[1146-1249]
--------------------------------
Y
S
R
I
L
N
G
--
D
N
I
I
L
H
M
L
----
Y
N
--
S
R
K
Y
M
I
I
R
D
T
D
T
I
-------------
N
C
V
Y
A
L
K
L
Q
S
N
L
G
-------------
N
--
Y
G
I
G
I
F
S
I
K
N
I
--
V
S
K
N
--
K
Y
--
C
S
Q
I
F
S
S
F
R
E
--------------
N
--
T
M
L
L
--
A
D
--
I
Y
----
K
PWRF
S
F
K
N
A
Y
T
P
V
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
34
HHSearch
45.23
17%
-18
- C4 -
1TF6
7
TF3A_XENLA
A:
[14-161]
---------------
I
C
S
FA
D
--
C
G
A
A
Y
N
K
N
W
K
L
Q
A
H
L
C
K
H
T
G
E
K
P
F
P
C
----
K
E
EG
C
E
K
G
F
--
T
S
L
H
H
--------------
L
T
R
H
S
L
T
----------------------------
H
T
G
E
K
--
N
F
T
C
--
D
S
DG
C
D
L
R
F
T
T
K
A
N
M
K
K
H
F
N
R
FHNI---
K
IC
V
Y
V
C
HF
E
N
--
C
G
----
K
----
A
F
K
K
H
-
N
Q
L
K
V
---
H
--
Q
-
F
S
H
T
-
Q
---
Q
L
P
Y
E
--------------
C
P
H
EG
C
D
K
R
F
S
L
-
P
S
R
L
K
R
H
E
K
V
H
A
G
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------