@TOME V2.3
(Nov 2016)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : bsu01680: (2016-06-03 )
MSKENNYHHLAQKILELCGGKSNISSYTHCMTRLRITPYDESKADAQALRKLDGVLGVVEAETLQIILGTGVVNHVTAAFSKLVSAEEGADVKEAAAKKKADINRKNATPFKLFLRKIASIFIPLIPALVASGLITGITKAIIQAGWLSADSQIAIILTVIGSGLFTYLGILVGINASKEFGGTPALGALAGILIINPEIAKISLFGEELLPGRGGLIGVLFAAIFIAYTEQFIRRFIPQSLDIIVTPTVSLLITGIVTYVVFMPLGGFISDAITSGLLSILDIGGIAAGFILGATFLPLVVTGLHQGLTPVHMELINSIGNDPLLPILAMGGAGQVGAAFAVFVKTKKTTLRKAIAGGLPSGLLGIGEPLIFGVTLPLGRPFLTACLGAGIGGAFQAYFQVATIAIGVSGLPLSFLVLPSQIILYIVGLFISYAAGFLLTYAFGYKDEMASQFD
Atome Classification :
(20 SA)
-------.........10........20........30........40........50.......-.60.-..-......70-........80........90........100.......110.......120----........130.......140..--.--....--150.......160.......170----.......180.......190.---.---.....200-.-----------......210.......220.......230....-----...---240..-------.-...--.250.-......260.......270......-.280.-......290.......300....-...310...----...----..--.320.---...-...330-.........340---..---......350.......360........370.......----380.......390.......400....---...410-.........420.......430.......440.......450...
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
-------MSKEN
N
Y
H
H
L
A
Q
K
I
L
E
LCGGKS
N
I
S
S
Y
T
H
C
M
T
RLRITPYDESK
A
D
A
Q
A
L
R
K
L
D
G
V
LG
V
-
V
E
-
A
-
E
T
-
L
Q
I
I
LGT
G
-
V
V
N
H
V
T
A
A
F
S
K
L
V
SAEEGA
D
V
K
E
A
A
A
KKKADINRKNA
T
P
F
K
L
F
L
R
K
I
A
S
I
-----
F
I
P
L
I
P
A
L
V
A
S
G
L
I
T
G
I
T
K
A
I
I
Q
--
A
--GWLS--AD
S
Q
I
A
I
I
L
T
V
I
G
S
G
L
F
T
Y
L
G
I
L
----VGINASKEFGGT
P
A
L
G
A
L
A
G
I
---
L
---
I
INP
E
I
A
K
-
I
-----------
S
LFGEELLPGRG
G
L
I
G
V
L
F
A
A
I
F
I
A
Y
T
E
Q
F
I
R
R
-----FIP---QSL
D
I
-------
I
-VT
P
--
T
V
S
L
L
-
I
T
G
I
V
T
Y
V
V
F
MP
L
G
G
F
I
S
D
A
I
T
S
G
L
-
L
S
I
L
D
-
I
G
G
I
A
A
G
F
I
L
G
A
T
F
L
P
L
V
V
T
G
L
H-QGL
T
--
P
V
H
----
M
E
L
----
I
N
--
S
IGND---P
L
L
-
P
I
L
A---MGGAGQV
G
A
A
F
----
A
V
---
F
V
KT
K
K
T
T
L
R
K
A
I
AGGL
P
-
S
G
L
L
GIGE
P
L
I
F
G
V
TLPL----G
R
P
F
L
T
A
C
L
GAGI
G
G
A
F
Q
A
Y
F
Q
V
A
T
I
A
---
I
GVS---GL
P
L
S
F
L
V
L
P
S
Q
I
I
L
Y
I
V
G
L
F
I
S
Y
A
A
G
F
L
L
T
Y
AFGY
K
D
E
M
ASQFD
17
PsiBlast_CBE
84.58
39%
-120
- C2 -
3IPJ
2
?
B:
[1-82]
--------
S
N
A
N
K
Y
N
K
I
A
N
E
L
I
K
I
I
G
-
E
D
N
I
I
S
I
T
H
C
A
T
R
L
R
V
M
V
K
D
R
E
I
I
N
D
K
K
V
E
K
V
D
E
V
K
G
V
F
F
T
-
S
-
G
Q
-
Y
Q
I
I
L
G
T
G
-
I
V
N
K
V
Y
A
E
V
E
K
M
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
84.25
39%
-111
- C2 -
3IPJ
1
?
A:
[1-82]
--------
S
N
A
N
K
Y
N
K
I
A
N
E
L
I
K
I
I
G
-
E
D
N
I
I
S
I
T
H
C
A
T
R
L
R
V
M
V
K
D
R
E
I
I
N
D
K
K
V
E
K
V
D
E
V
K
G
V
F
F
T
-
S
-
G
Q
-
Y
Q
I
I
L
G
T
G
-
I
V
N
K
V
Y
A
E
V
E
K
M
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
29
Fugue
81.64
35%
-86
- C2 -
3IPJ
1
?
A:
[1-95]
--------
S
N
A
N
K
Y
N
K
I
A
N
E
L
I
K
I
I
G
-
E
D
N
I
I
S
I
T
H
C
A
T
R
L
R
V
M
V
K
D
R
E
I
I
N
D
K
K
V
E
K
V
D
E
V
K
G
V
-
F
F
T
S
-
G
Q
-
Y
Q
I
I
L
G
T
G
-
I
V
N
K
V
Y
A
E
V
E
K
M
G
L
K
T
L
S
K
K
E
Q
D
E
L
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
22
HHSearch
81.54
38%
-87
- C2 -
3IPJ
1
?
A:
[1-87]
--------
S
N
A
N
K
Y
N
K
I
A
N
E
L
I
K
I
I
-
G
E
D
N
I
I
S
I
T
H
C
A
T
R
L
R
V
M
V
K
D
R
E
I
I
N
D
K
K
V
E
K
V
D
E
V
K
G
V
-
F
F
-
T
S
G
Q
-
Y
Q
I
I
L
G
T
G
I
V
N
K
-
V
Y
A
E
V
E
K
M
G
L
K
T
L
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
19
HHSearch
74.70
15%
-121
- C2 -
3QNQ
8
?
A:
[13-421]
---------------------------------------------------------------------------------------------------------------------
A
G
K
V
A
E
Q
R
H
L
L
A
I
R
D
G
-----
L
V
L
T
M
P
F
L
I
I
G
S
I
F
L
I
I
S
T
L
P
I
P
--
G
Y
S
E
F
M
A
S
L
F
G
K
N
W
N
V
A
L
G
Y
P
V
S
A
T
F
N
I
M
A
L
I
A
V
F
G
I
A
Y
R
L
G
E
Y
Y
K
V
D
A
L
A
S
G
A
L
S
L
---
V
T
F
L
L
A
T
P
F
Q
V
A
Y
I
MPGTK
E
S
I
L
V
D
G
V
I
P
A
A
-
L
M
G
S
Q
G
L
F
V
A
M
I
I
A
I
I
S
T
E
I
Y
R
F
L
V
Q
K
KM
I
I
K
M
P
---
E
T
V
P
P
A
V
T
R
S
F
A
A
-
L
I
P
--
G
F
I
V
V
T
V
V
W
I
I
R
L
I
F
E
H
T
T
F
G
S
I
H
N
V
V
G
K
L
L
Q
E
P
L
S
I
L
G
A
S
L
W
G
A
V
I
A
V
I
L
V
H
V
L
W
A
C
G
I
H
-
G
A
T
I
V
G
G
V
M
S
P
I
W
L
S
L
M
D
Q
N
R
I
A
F
Q
A
G
Q
D
VPN
T
I
T
A
Q
F
F
D
L--
W
I
Y
M
G
G
S
G
A
T
L
A
L
V
V
G
M
---
L
L
F
A
R
S
Q
Q
L
K
S
L
G
R
L
S
I
A
-
P
G
I
F
N
I
N
E
M
V
T
F
G
M
P
I
V
M
NP
L
L
L
I
P
F
I
V
V
P
V
V
L
T
I
V
S
Y
F
A
M
E
W
G
L
V
A
R
P
SGA
A
V
T
W
TTP
I
L
F
S
G
Y
L
G
S
G
G
-
K
I
S
G
V
I
L
Q
L
V
N
F
A
L
A
F
V
I
Y
L
P
F
L
K
I
--------
20
HHSearch
70.56
35%
-101
- C2 -
3BP3
1
PTGCB_ECOLI
A:
[2-81]
------------
G
T
S
E
M
A
P
A
L
V
A
A
F
G
G
K
E
N
I
T
N
L
D
A
C
I
T
R
L
R
V
S
V
A
D
V
S
K
V
D
Q
A
G
L
K
K
L
-
G
A
A
G
V
-
V
V
-
A
G
S
G
-
V
Q
A
I
F
G
T
K
-
S
D
N
-
L
K
T
E
M
D
E
Y
I
R
N
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
21
HHSearch
68.18
35%
-76
- C2 -
1IBA
-
A:
[15-92]
----------------
M
A
P
A
L
V
A
A
F
G
G
K
E
N
I
T
N
L
D
A
C
I
T
R
L
R
V
S
V
A
D
V
S
K
V
D
Q
A
G
L
K
K
L
-
G
A
A
G
V
-
V
V
-
A
G
S
G
-
V
Q
A
I
F
G
T
K
-
S
D
N
-
L
K
T
E
M
D
E
Y
I
R
N
F
G
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
PsiBlast_PDB
59.55
39%
-40
- C2 -
3BP8
-
PTGCB_ECOLI
C:
[1-61]
----------------
M
A
P
A
L
V
A
A
F
G
G
K
E
N
I
T
N
L
D
A
C
I
T
R
L
R
V
S
V
A
D
V
S
K
V
D
Q
A
G
L
K
K
L
G
A
A
G
V
V
-
V
A
-
G
-
S
G
-
V
Q
A
I
F
G
T
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
PsiBlast_PDB
57.44
36%
-39
- C2 -
1O2F
-
B:
[314-375]
---------------
E
M
A
A
A
L
V
A
A
F
G
G
K
E
N
I
T
N
L
D
A
C
I
T
R
L
R
V
S
V
A
D
V
S
K
V
D
Q
A
G
L
K
K
L
G
A
A
G
V
V
-
V
A
-
G
-
S
G
-
V
Q
A
I
F
G
T
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
56.65
36%
-33
- C2 -
1IBA
-
A:
[15-75]
----------------
M
A
P
A
L
V
A
A
F
G
G
K
E
N
I
T
N
L
D
A
C
I
T
R
L
R
V
S
V
A
D
V
S
K
V
D
Q
A
G
L
K
K
L
G
A
A
G
V
V
-
V
A
-
G
-
S
G
-
V
Q
A
I
F
G
T
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
18
PsiBlast_CBE
54.62
47%
-28
- C2 -
3BP3
1
B:
[15-70]
-------------------------
G
G
K
E
N
I
T
N
L
D
A
C
I
T
R
L
R
V
S
V
A
D
V
S
K
V
D
Q
A
G
L
K
K
L
-
G
A
A
G
V
-
V
V
-
A
-
G
S
G
V
Q
A
I
F
G
T
K
-
S
D
N
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
PsiBlast_PDB
54.48
47%
-26
- C2 -
3BP3
1
PTGCB_ECOLI
A:
[15-70]
-------------------------
G
G
K
E
N
I
T
N
L
D
A
C
I
T
R
L
R
V
S
V
A
D
V
S
K
V
D
Q
A
G
L
K
K
L
-
G
A
A
G
V
-
V
V
-
A
-
G
S
G
V
Q
A
I
F
G
T
K
-
S
D
N
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
PsiBlast_PDB
53.32
36%
-111
- C1 -
2JGP
2
A:
[168-233]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
V
P
F
A
L
A
Y
S
E
V
T
E
E
E
A
R
E
-----
L
V
S
S
L
V
Q
P
F
D
L
-------
E
-
V
A
P
L
I
R
V
S
L
L
-
K
I
G
E
D
R
Y
V
L
F
T
D
M
H
H
S
I
S
D
G
V
S
S
G
I
-
L
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
36
Fugue
51.78
12%
-20
- C2 -
4LTB
-
?
A:
[190-360]
S
L
S
Q
A
S
A
D
L
E
A
T
L
R
H
K
L
T
V
M
Y
S
Q
I
N
G
A
S
R
A
L
D
D
V
R
N
R
Q
Q
D
V
R
M
T
A
N
R
K
V
E
Q
L
Q
Q
E
Y
T
E
M
K
A
L
L
D
A
-
S
E
-
T
-
T
S
-
T
R
K
I
K
E
E
E
-
K
R
V
N
S
K
F
D
T
I
Y
Q
I
L
L
K
K
K
S
E
I
Q
T
L
K
E
E
I
E
Q
S
L
T
K
R
D
E
F
E
F
L
E
K
A
S
K
L
R
G
I
S
T
K
P
V
Y
I
P
E
V
E
--
L
N
H
K
L
I
K
G
I
H
Q
S
T
I
D
L
K
N
--
E
L
K
Q
--
C
I
G
R
L
Q
E
L
T
P
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
PsiBlast_PDB
51.48
26%
-125
- C2 -
1NQZ
1
?
A:
[42-152]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
T
--
R
E
A
D
P
R
V
L
L
T
V
R
S
------
K
G
Q
I
----
A
F
P
G
G
S
L
D
A
G
E
T
P
T
Q
A
A
L
R
E
A
Q
E
E
V
---
A
L
D
P
--
A
A
-
V
-----------
T
L
L
G
E
---------
L
D
D
V
F
T
P
V
G
F
H
V
T
-
P
V
L
G
R
-----
I
A
P
---
E
A
L
D
T
-------
L
R
V
T
P
--
E
V
A
Q
I
-
I
T
P
T
L
A
E
L
R
A
V
P
L
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
PsiBlast_PDB
50.67
26%
-126
- C2 -
1NQY
-
?
A:
[42-152]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
T
--
R
E
A
D
P
R
V
L
L
T
V
R
S
------
K
G
Q
I
----
A
F
P
G
G
S
L
D
A
G
E
T
P
T
Q
A
A
L
R
E
A
Q
E
E
V
---
A
L
D
P
--
A
A
-
V
-----------
T
L
L
G
E
---------
L
D
D
V
F
T
P
V
G
F
H
V
T
-
P
V
L
G
R
-----
I
A
P
---
E
A
L
D
T
-------
L
R
V
T
P
--
E
V
A
Q
I
-
I
T
P
T
L
A
E
L
R
A
V
P
L
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
16
PsiBlast_PDB
45.30
26%
-34
- C2 -
1EP3
1
PYRDB_LACLM
A:
[179-249]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
P
I
A
K
A
V
E
A
A
G
A
D
G
L
-
T
M
I
N
T
-
L
M
G
V
R
F
D
L
K
T
R
Q
P
I
L
A
N
I
T
G
G
L
S
G
P
A
I
K
--
P
V
A
----
L
K
L
----
I
H
--
Q
V
A
Q
D
---
V
D
I
-
P
I
I
G
---
M
G
G
--------------------------------------------------------------------------------------------------------------------------------------------
14
PsiBlast_PDB
45.01
26%
-39
- C2 -
1EP1
1
PYRDB_LACLM
A:
[179-249]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
P
I
A
K
A
V
E
A
A
G
A
D
G
L
-
T
M
I
N
T
-
L
M
G
V
R
F
D
L
K
T
R
Q
P
I
L
A
N
I
T
G
G
L
S
G
P
A
I
K
--
P
V
A
----
L
K
L
----
I
H
--
Q
V
A
Q
D
---
V
D
I
-
P
I
I
G
---
M
G
G
--------------------------------------------------------------------------------------------------------------------------------------------
13
PsiBlast_PDB
44.98
31%
32
- C2 -
1SZS
1
GABT_ECOLI
A:
[218-284]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
--
P
A
F
----
M
Q
R
----
L
R
--
A
L
C
D
E
---
H
G
I
-
M
L
I
A
DEV
Q
S
G
A
G
R
T
G
T
L
F
----
A
M
E
Q
M
G
V
A
P
D
L
T
T
F
A
K
S
I
A
G
G
F
P
L
A
G
V
T
G
R
A
E
------------------------------------------------------------------------------------------------
15
PsiBlast_PDB
44.30
26%
-43
- C2 -
1EP2
2
PYRDB_LACLM
A:
[179-249]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
P
I
A
K
A
V
E
A
A
G
A
D
G
L
-
T
M
I
N
T
-
L
M
G
V
R
F
D
L
K
T
R
Q
P
I
L
A
N
I
T
G
G
L
S
G
P
A
I
K
--
P
V
A
----
L
K
L
----
I
H
--
Q
V
A
Q
D
---
V
D
I
-
P
I
I
G
---
M
G
G
--------------------------------------------------------------------------------------------------------------------------------------------