@TOME V2.3
(Nov 2016)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : bsu01720: (2016-06-03 )
MILVSSCLGGIECRYNGSHAASEKIRKLVDEKKAVMACPELLGGFSTPREPAEIIGGTGEDVLNGTAKIVTASGEDVTELYMEGAAKTLAYAKEINASAVILKENSPSCGSGFIYNGTFSGKKITGSGVTAALLKQAGYRVISENELNDIL
Atome Classification :
(20 SA)
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------...-......10......------.----.20........30..---------...-...40........50-.-....-...----60.......--------------.70.-------------------.......80-----.--.-.--..-...90.---.....--..100.....-..--110.--......--120....--....130...-.----..----------.----..------------140------------.......150----------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
I
L-
V
S
S
CLGG
I
E
C
R
YNG------S----H
A
A
S
E
K
I
R
K
L
V
D
E
K
K
---------
A
V
M
-
A
C
P
E
L
LGGFSTPR
E
P
-
A
-
E
I
IG-GT
G
----
E
D
VLNGT
A
K
--------------
I
V
TA-------------------SG
E
D
V
T
E
L
Y
-----
M
--E-G--
A
A
-
K
T
L
A
Y
A
---KEIN
A
--
S
A
V
I
L
KENSP-SC--GS
G
F
--
I
YNGTF--SG-
K
K
IT--GS
G
V
T
--
A
A
L
-
L
----
K
Q----------A----G
Y
------------
R
V
I------------SEN
E
L
N
DIL-----------------------------
17
Fugue
85.59
17%
-44
- C7 -
4LVI
4
PRE_STRAG
A:
[1-194]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------S
Y
M
V
A
R
M
Q
K
M
-
K
A
G
N
L
G
G
A
F
K
H
N
E
R
VSNKDI
N
----
P
S
R
S
H
L
N
Y
E
L
T
D
R
D
R
---------
S
V
S
-
Y
E
K
Q
I
K
D
Y
V
N
E
N
K
V
S
-
N
-
R
A
I
R
-
K
D
A
VL
C
D
E
W
I
I
T
S
D
K
D
--------------
F
F
E
K
-------------------
L
D
E
E
Q
T
R
T
F
-----
F
--
E
-
T
--
A
K
-
N
Y
F
A
E
N
YGE
S
N
I
A
Y
--
A
S
V
H
L
D
E
S
T
P
-
H
M
--
H
M
G
V
V
P
F
E
N
G
K
L
--
S
S
-
K
A
M
F
--
D
R
E
E
L
--
K
H
I
-
Q
----
E
D
----------
L
----
P
R
------------
Y
M
S
D
H
GFE
L
E
R
G
KLN
S
E
A
K
H
K
T
V
A
E
F
K
R
A------------------------
24
Fugue
70.55
18%
-15
- C6 -
2XQO
3
?
A:
[34-243]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
G
Y
-
F
P
P
G
T
S
K
H
E
L
I
A
R
A
------
S
S
LK
V
S
E
V
K
A
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I
K
K
Q
V
D
E
H
W
---------
D
V
I
-
R
--
D
V
C
G
F
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N
K
E
V
A
Y
-
A
-
F
F
F
G
M
A
T
R
----
E
S
T
F
R
A
A
T
E
T
G
S
GASHAFGPLQT
A
E
T
A
YANANPNYMPEHNVPEMHQ
Y
D
F
T
E
Y
N
F
Y
D
V
G
I
S
V
--
H
M
G
--
I
R
-
H
F
L
H
F
A
---
R
L
A
K
E
K
Y
S
G
R
D
I
A
R
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G
L
M
G
Y
--
N
T
G
W
--
I
D
G
A
D
E
--
S
W
-
I
V
R
Y
--
A
D
E
T
A
A
L
G
A
W
-
Y
----
L
R
----------
N
----
N
H
MSDDEFTWDTDP
R
V
D
------------
R
S
N
P
W
E
I
Y
Y
-----------------------------
19
Fugue
69.10
22%
-6
- C4 -
4QQD
-
UHRF1_HUMAN
A:
[133-281]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
L
Y
K
V
N
E
Y
V
D
A
R
D
---------
T
N
M
G
A
W
F
E
A
Q
V
V
R
V
T
R
K
E
E
-
D
-
V
I
Y
H
-
V
K
Y
----
D
D
--
Y
P
E
N
G
--------------
V
V
Q
M
-------------------
N
S
R
D
V
R
A
---------------
R
A
-
R
T
I
I
K
W
---
Q
D
L
E
V
--
G
Q
V
V
M
L
N
Y
N
P
-
D
N
PK
E
R
G
F
--
W
Y
D
A
E
I
--
S
R
-
K
R
E
T
RT
A
R
E
L
Y
--
A
N
V
-
V
LGD
D
S
L
----------
N
----
D
C
------------
R
I
I
------------
F
V
D
E
V
F
K
I
E
-----------------------------
25
Fugue
68.54
18%
-23
- C5 -
3LD1
-
R1A_IBVM
A:
[5-363]
L
R
D
V
I
L
V
S
KDIP
E
Q
L
C
D
A
L
F
F
Y
TSHNPKD
Y
A
D
A
F
A
V
R
Q
K
F
D
R
N
L
Q
T
G
K
Q
F
K
F
ETVC
G
L
F
L
L
K
G
V
D
KITPGVP
A
K
V
L
K
ATSK
L
A
D
L
E
D
I
FGVS
P
F
A
R
K
Y
R
E
L
L
K
T
A
CQWSLT
V
E
T
L
D
A
R
A
L
T
LDEIFD
P
T
E
I
L
W
L
Q
V
AAK
I
Q
V
S
A
M
A
M
R
R
L
V
G
E
V
T
A
K
V
M
D
A
L
GSNMSALF
Q
I
F
-
K
Q
Q
I
V
R
I
F
Q
A
A
L
A
I
------
F
----
E
N
V
S
E
L
P
Q
R
I
A
A
L
K
M
---------
A
F
A
-
K
C
A
K
S
I
T
V
V
V
M
E
R
T
L
-
V
V
R
E
F
A
-
G
T
C
----
L
A
S
I
N
G
A
V
A
--------------
K
F
F
E
----------------------
E
L
P
N
G
F
-----
M
--
G
-
A
--
K
I
F
T
T
F
A
F
F
---
R
E
A
A
V
--
K
I
V
D
N
I
P
N
A
P
-
R
G
--
T
K
G
F
--
E
V
V
G
N
A
--
K
G
-
T
Q
V
V
--
V
R
G
M
R
--
N
D
L
-
T
----
L
L
DQKAEIPVES
E
----
G
W
------------
S
A
I
------------
L
G
G
H
L
C
Y
V
F
K
S
GD
R
F
Y
A
A
P
L
S
GNFALHD
V
H
C
C
E
R
V
VCL
23
Fugue
64.62
10%
-40
- C7 -
1XPJ
3
?
A:
[1-124]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------M
K
K
L
-
I
V
D
L
D
G
T
L
T
Q
A
N
T
S
------
D
----
Y
R
N
V
L
P
R
L
D
V
I
E
Q
L
R
---------
E
Y
H
-
Q
-----------------------
L
G
----
F
E
I
V
I
S
T
A
R
--------------
N
M
R
T
-------------------
Y
E
G
N
V
G
K
I
N
-----
I
--
H
-
T
--
L
P
-
I
I
T
E
W
L
---
D
K
H
Q
V
--
P
Y
D
E
I
L
V
G
K
P
-
W
C
--
G
H
D
G
--
F
Y
-----------
I
D
--
D
R
A
V
R
--
P
S
E
-
F
----
A
S
----------
M
----
N
L
------------
E
E
I
------------
H
Q
L
F
E
K
E
K
S
-----------------------------
18
Fugue
60.02
9%
-32
- C7 -
2GM3
1
USPAL_ARATH
A:
[5-175]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------P
T
K
V
M
V
A
V
N
A
S
T
I
K
D
Y
P
N
P
------
S
----
I
S
C
K
R
A
F
E
W
T
L
E
K
I
V
RSNTSD
F
K
I
L
L
L
-
H
V
Q
V
S
I
Y
A
S
P
E
D
F
R
D
M
R
-
Q
S
N
K
-
A
K
G
----
L
H
L
L
E
F
F
V
N
--------------
K
C
H
E
-------------------
I
G
V
G
C
E
A
W
I
-----
K
--
T
-
G
D
P
K
D
-
V
I
C
Q
E
V
---
K
R
V
R
P
--
D
F
L
V
V
----------
G
S
------
R
G
L
G
--
T
V
-
S
A
F
C
--
V
K
H
A
E
--
C
P
V
M
T
----
I
K
----------
R
----
N
A
------------
D
E
T
------------
P
S
D
P
A
D
D
-------------------------------
20
Fugue
58.80
9%
-20
- C7 -
2KHZ
-
DNPH1_RAT
A:
[1-163]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------MAA
S
G
E
-
Q
A
P
C
S
V
Y
F
C
G
S
I
R
G
------
G
----
R
E
D
Q
A
L
Y
A
R
I
V
S
R
L
R
---------
R
Y
G
-
K
V
L
T
E
H
V
A
D
A
E
L
E
P
L
-
G
-
E
E
A
A
-
G
G
D
----
Q
F
I
H
E
Q
D
L
N
--------------
W
L
Q
Q
-------------------
A
D
V
V
V
A
E
V
T
-----
Q
PS
L
-
G
--
V
G
-
Y
E
L
G
R
A
---
V
A
L
G
K
--
P
I
L
C
L
F
R
P
Q
S
-
G
R
--
V
L
S
A
--
M
I
R
G
A
A
--
D
G
-
S
R
F
Q
--
V
W
D
Y
A
--
E
G
E
-
V
----
E
T
----------
M
----
L
D
------------
R
Y
F
------------
E
A
Y
L
P
Q
K
T
A
SSSHPSA----------------------
2
PsiBlast_PDB
57.91
33%
-23
- C8 -
2M4F
-
?
A:
[90-153]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
E
V
V
N
N
F
V
K
--------------
V
M
T
E
-------------------
G
G
S
F
K
T
S
L
Y
-----
Y
----
G
--
Y
K
-
E
E
Q
S
V
I
---
N
G
I
Q
N
--
K
E
I
I
T
K
I
E
K
I
-
D
---
G
T
E
Y
--
I
---
T
F
--
S
G
-
D
K
I
K
--
N
S
G
-------------------------------------------------------------------------------------------------
3
PsiBlast_PDB
56.37
33%
-22
- C8 -
4J38
-
?
A:
[70-133]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
E
V
V
N
N
F
V
K
--------------
V
M
T
E
-------------------
G
G
S
F
K
T
S
L
Y
-----
Y
----
G
--
Y
K
-
E
E
Q
S
V
I
---
N
G
I
Q
N
--
K
E
I
I
T
K
I
E
K
I
-
D
---
G
T
E
Y
--
I
---
T
F
--
S
G
-
D
K
I
K
--
N
S
G
-------------------------------------------------------------------------------------------------
16
Fugue
52.53
12%
1
- C7 -
5C3L
-
?
B:
[283-406]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
L
------
L
----
C
Q
D
V
E
N
F
Q
K
F
V
K
E
Q
K
---------
Q
V
Q
-
E
E
I
S
R
M
S
-----------
S
K
A
M
-
L
K
V
----
Q
E
D
I
K
A
L
K
Q
--------------
L
L
S
V
-------------------
A
S
S
G
L
Q
R
N
A
-----
L
--
A
-
I
--
D
K
-
L
K
I
E
T
A
---
E
E
L
K
N
--
A
E
I
A
L
R
T
Q
K
T
-
P
----
P
G
L
--
Q
H
E
N
T
---
A
P
-
A
D
Y
F
--
H
T
L
V
Q
--
Q
F
E
-
V
----
Q
L
----------
Q
----
Q
Y
------------
R
Q
Q
------------
I
E
E
L
E
N
H
L
A
-----------------------------
1
PsiBlast_PDB
50.03
27%
-10
- C8 -
2EKC
-
TRPA_AQUAE
A:
[192-249]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
R
I
K
K
K
V
E
E
Y
R
---------
E
L
C
-
D
K
P
V
V
V
G
F
G
V
S
K
K
E
H
-
A
-
R
E
I
G
-
S
F
A
----
D
G
V
V
V
G
S
A
L
--------------
V
K
L
A
-------------------
G
Q
K
K
I
E
D
L
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10
HHSearch
48.11
14%
5
- C8 -
3B0Z
-
?
B:
[20-52]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
V
A
K
--
G
A
G
L
I
--
A
L
R
-
I
----
R
E
----------
I
G
A
E
H
R
V
------------
P
T
L
------------
E
A
P
P
L
A
R
A
------------------------------
7
HHSearch
47.17
21%
-22
- C8 -
3B1S
-
?
B:
[283-315]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
V
A
K
--
G
K
G
T
I
--
A
Q
K
-
I
----
V
E
----------
I
A
E
N
Y
S
I
------------
P
V
V
------------
R
K
P
E
L
A
R
A
------------------------------
5
PsiBlast_PDB
46.34
29%
-49
- C8 -
2YXG
-
DAPA_METJA
A:
[64-100]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
V
V
N
G
R
V
Q
--------------
V
I
A
G
-------------------
A
G
S
N
C
T
E
E
A
-----
I
--
E
-
L
--
S
-----
V
F
A
---
E
D
V
G
A
--
D
A
V
L
--------------------------------------------------------------------------------------------------------------------------------------
8
HHSearch
45.69
11%
-23
- C8 -
2VT1
1
?
B:
[21-52]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
L
I
--
E
T
N
Q
C
--
A
L
A
-
V
----
R
K
----------
Y
A
N
E
V
G
I
------------
P
T
V
------------
R
D
V
K
L
A
R
K
------------------------------
6
HHSearch
45.12
23%
-30
- C8 -
3BZY
1
?
B:
[20-53]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
I
E
T
--
G
K
D
A
K
--
A
L
Q
-
I
----
I
K
----------
L
A
E
L
Y
D
I
------------
P
V
I
------------
E
D
I
P
L
A
R
S
L
-----------------------------
14
HHSearch
44.67
10%
-42
* C8 *
2JLI
-
YSCU_YERPE
A:
[267-315]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
--
A
I
G
I
--
L
Y
K
R
G
E
TP
L
P
L
V
T
F
K
--
Y
T
D
A
Q
--
V
Q
T
-
V
----
R
K
----------
I
A
E
E
E
G
V
------------
P
I
L
------------
Q
R
I
P
L
A
R
A
------------------------------
9
HHSearch
44.19
18%
-19
- C8 -
3C01
4
?
E:
[21-52]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
V
Y
--
E
T
N
Q
R
--
A
L
A
-
V
----
R
A
----------
Y
AEKV
G
V
------------
P
V
I
------------
V
D
I
K
L
A
R
S
------------------------------
11
HHSearch
42.82
14%
-20
- C8 -
3T7Y
5
?
A:
[36-67]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
A
M
--
G
V
N
L
R
--
A
K
R
-
I
----
I
A
----------
E
A
E
K
Y
G
V
------------
P
I
M
------------
R
N
V
P
L
A
H
Q
------------------------------
4
PsiBlast_PDB
35.20
50%
28
- C3 -
1HG8
-
PGLR_GIBFU
A:
[316-339]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
C
--
G
D
G
S
--
C
S
G
F
T
F
--
S
G
-
N
A
I
T
--
G
G
G
K
T
--
S
S
-------------------------------------------------------------------------------------------