@TOME V2.3
(Nov 2016)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : bsu01740: (2016-06-03 )
MSCPEQIVQLMHMHLDGDILPKDEHVLNEHLETCEKCRKHFYEMEKSIALVRSTSHVEAPADFTANVMAKLPKEKKRASVKRWFRTHPVIAAAAVFIILMGGGFFNSWHNDHNFSVSKQPNLVVHNHTVTVPEGETVKGDVTVKNGKLIIKGKIDGDVTVVNGEKYMASAGQVTGQIEEINQLFDWTWYKMKSAGKSVLDAFNPNGEE
Atome Classification :
(20 SA)
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------.........10........20........30...-----..--..-----------.40------.........50.------..-.....60........70--..-----......80.....-------...90........100--.........110--..-----.....120---..------...------..130.......140--....---.---------..---150...----.---...160-------.........170......-.180-..---.....190......-------------.200..----....----------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------MS
C
P
E
Q
I
V
Q
L
M
H
M
HLDGDILP
K
D
E
H
V
L
N
E
H
L
E
T
C
-----
E
K
--
C
R
-----------
K
H
-------
F
Y
E
M
E
K
S
I
A
L
V
R------ST-SHVEAPA
D
F
T
A
N
V
M
A
KL--
P
K
-----
E
K
K
R
A
S
V
K
R
W
F
R
T-------H
P
V
I
A
A
A
A
V
F
I
I
L
M----GGGFFNSWHNDH--NF-----SVSKQP
N
L
---
V
V
------HN
H
------
T
V
TVPEGE
T
V
K
G
D
V
T
--
V
KN
G
---
K
---------
L
I
---
I
K
G
KID----G---
D
V
T
V
---------VNG
E
K
Y
M
ASAGQVTG
Q
I
E
-
E
I
N
Q
-
L
F
---
D
W
T
W
Y
K
M
K
S
A
G
K
S
V
-------------
L
D
AFNP----NGEE----------------------------
31
Fugue
76.98
21%
-41
- C2 -
4KKI
20
TCO1_HUMAN
A:
[24-434]
E
I
C
E
V
S
EENYIRL
K
P
L
L
N
T
M
I
Q
SNYNRGTSA
V
N
V
V
L
S
L
K
L
V
GIQI
Q
T
L
M
Q
K
M
I
Q
Q
I
K
Y
N
V
K
SRLSDVS
S
G
E
L
A
L
I
I
L
A
L
G
VCRN
A
E
E
N
L
I
Y
D
Y
H
L
I
D
K
L
E
N
K
F
Q
A
E
I
E
N
M
E
A
H
NGTPLTN
Y
Y
Q
L
S
L
D
V
L
A
L
C
L
F
NGNYS
T
A
E
V
V
N
H
FTPENKNYYFGSQFS
V
D
T
G
A
M
A
V
L
A
L
T
C
V
K
K
S
L
I
N
G
Q
I
K
A
D
E
G
S
L
K
N
I
S
I
Y
T
K
S
L
V
E
K
I
-----
L
S
--
E
K
-----------
K
E
NGLIGNT
F
S
T
G
E
A
M
Q
A
L
F
V
------
S
S
-
D
Y
Y
N
E
N
D
W
N
C
Q
Q
T
L
N
T
V
--
L
T
-----
E
I
S
Q
G
A
F
S
N
-------------
P
N
A
A
A
Q
V
L
P
A
L
M
----
G
K
T
F
L
D
I
N
K
D
S
S
--
C
V
-----
S
A
S
G
N
F
N
I
Q
S
Y
I
S
------
V
N
Y
------
S
V
R
I
N
E
--
T
Y
F
T
N
V
T
--
V
L
N
G
SV
F
L
---------
S
V
---
M
E
K
A
Q
K
----
M
---
N
D
T
I
---------
F
G
F
T
M
E
E
R
S
W
G
P
Y
I
T
C
I
Q
-
G
L
C
A
N
N
N
---
D
R
T
Y
W
E
L
L
S
G
G
E
P
L
-------------
S
Q
G
A
G
S
Y
V
V
R
N
G
E
N
L
E
V
R
WSKYL-------------------
32
Fugue
71.86
21%
-7
- C4 -
4QGL
3
MTND_BACAN
A:
[1-174]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
A
A
A
M
A
Q
I
R
I
H
E
V
N
T
R
I
--
E
N
E
V
K
V
S
K
F
L
Q
E
------
E
G
--
V
-------------
L
-------
Y
E
K
W
N
I
S
K
L
P
P
H
------
L
N
-
E
N
Y
S
L
T
D
E
N
K
A
E
I
L
A
V
F
--
S
K
-----
E
I
A
D
V
S
A
R
R
G
Y
K
A
-------
H
D
V
I
S
L
S
----------------
N
S
T
P
N
L
D
--
E
L
-----
L
I
N
F
Q
K
E
------------
H
H
H
------
T
-----
D
D
E
V
R
F
I
V
S
---
G
H
G
---
I
---------
F
A
---
I
E
G
K
-
D
----
G
T
F
F
D
V
E
L
---------
E
P
G
D
L
I
S
V
P
E
N
A
R
------------------
H
Y
F
T
L
Q
D
D
R
Q
V
V
-------------
A
I
R
I
F
V
----
T
T
E
G
WVPIY-----------------------
27
Fugue
70.92
14%
-31
- C7 -
1IZN
3
CAPZB_CHICK
B:
[2-271]
------------------------------------------------------------------------------------------------------------------------------------------------S
D
Q
Q
L
D
C
A
L
D
L
M
R
R
LPPQQ
I
E
K
N
L
S
D
L
I
D
L
V
P
S
L
C
E
D
L
L
S
S
V
D
Q
P
L
K
I
A
R
D
K
V
V
G
K
D
Y
L
L
C
-----
D
Y
--
N
R
DGD
S
Y
R
S
PWSN
K
Y
-------
D
P
P
L
E
D
G
A
M
P
S
A
------
R
L
-
R
K
L
E
V
E
A
N
N
A
F
D
Q
Y
R
D
L
--
Y
F
-----
E
G
G
V
S
S
V
Y
L
W
D
L
D
-------
H
---
G
F
A
G
V
I
L
I
K
K
A
G
DG
S
K
K
I
K
G
C
W
D
S
I
H
--
V
V
-----
E
V
Q
E
K
S
S
G
---
R
T
------
A
H
Y
------
K
L
T
S
T
V
M
L
W
L
Q
T
N
K
T
--
G
S
G
T
---
M
---------
N
L
G
G
S
L
T
R
Q
M
E
----
K
---
D
E
T
V
---------
S
D
S
S
P
H
I
A
N
I
G
R
L
V
E
D
M
E
N
K
I
R
S
-
T
L
---
N
E
I
Y
F
G
K
T
K
D
I
V
N
G
-------------
L
R
S
I
D
A
----
I
P
D
N
Q
K
Y
K
Q
L
Q
R
E
L
S
Q
V
L
T
Q
R
QI---------
26
Fugue
70.59
14%
-27
- C7 -
1Q87
-
?
A:
[147-345]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
M
C
I
------------
G
N
S
T
P
N
E
Q
E
T
F
R
A
K
V
D
E
I
-----
W
F
R
L
T
Q
-----------
K
T
-------
D
G
T
V
M
R
D
F
L
I
E
K
------
A
A
-
E
Y
F
K
Q
P
E
Q
P
K
Q
N
A
I
E
V
I
--
S
A
I
M
APQ
E
E
Q
T
K
S
K
A
D
L
Y
K
F
-------
L
A
M
F
G
P
Y
E
T
I
M
L
K
I
----
A
S
L
L
L
I
S
N
N
K
G
H
WL
T
F
-----
D
P
Q
D
S
I
S
G
---
W
F
------
D
Q
N
------
E
P
N
C
L
I
L
K
T
P
T
G
I
R
K
--
I
W
N
K
---
P
---------
L
I
-----
E
A
T
G
----
Q
---
Y
L
M
D
---------
E
N
G
E
K
Y
------------------------
D
S
W
D
K
Y
F
E
M
K
P
I
A
-------------
Y
P
T
F
A
P
----
M
H
H
H
H---------------------------
10
HHSearch
67.01
19%
-75
- C8 -
2Q1Z
1
CHRR_RHOS4
B:
[3-84]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
R
-
H
H
V
S
D
A
L
L
T
A
Y
A
A
G
T
L
S
E
A
F
S
L
V
V
A
T
H
L
S
L
C
-----
D
E
--
C
R
-----------
A
R
-------
A
G
A
L
D
A
V
G
G
S
L
M
------
E
E
T
A
P
V
A
L
S
E
G
S
L
A
S
V
M
A
Q
L
--
D
R
-----
Q
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
24
Fugue
61.83
19%
-68
- C8 -
3HUG
2
RSLA_MYCTU
B:
[25-86]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
H
H
Y
A
M
W
D
A
A
Y
V
L
G
A
L
S
A
A
D
R
R
E
F
E
A
H
L
A
G
C
-----
P
E
--
C
R
-----------
G
A
-------
V
T
E
L
C
G
V
P
A
L
L
S
------
Q
L
-
D
R
D
E
V
A
A
I
S
E
S
A
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
HHSearch
60.86
20%
-83
- C8 -
3HUG
1
RSLA_MYCTU
B:
[25-74]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
H
H
Y
A
M
W
D
A
A
Y
V
L
G
A
L
S
A
A
D
R
R
E
F
E
A
H
L
A
G
C
-----
P
E
--
C
R
-----------
G
A
-------
V
T
E
L
C
G
V
P
A
L
L
S
------
Q
L
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
HHSearch
59.41
9%
-79
- C8 -
4NQW
4
RSKA_MYCTU
B:
[7-79]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
F
E
L
L
E
L
A
T
P
Y
A
L
N
A
V
S
D
D
E
R
A
D
I
D
R
R
V
A
A
A
P
S
P
V
A
A
A
--
F
N
-----------
D
E
-------
V
R
A
V
R
E
T
M
A
V
V
S
------
A
A
-
T
T
A
E
P
P
A
H
L
R
T
A
I
L
D
A
T
--
K
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
14
HHSearch
58.69
34%
-64
- C6 -
2N3D
-
?
A:
[40-86]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
L
L
S
A
D
L
T
I
E
G
G
V
T
--
G
-
E
G
---
E
---------
L
Q
---
I
D
G
V
V
K
----
G
---
D
V
R
V
-----------
G
R
L
T
V
G
E
T
G
H
V
E
G
S
V
Y
--------------------------------------------------------------------------------
3
PsiBlast_PDB
58.36
23%
32
- C8 -
3UPL
3
?
A:
[96-198]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
D
D
--
N
D
-----
L
I
L
S
N
P
L
I
---
D
V
------
I
I
D
------
A
T
G
I
P
E
V
G
A
E
T
G
I
A
A
--
I
R
N
G
---
K
---------
H
L
---
V
M
M
N
V
E
----
A
---
D
V
T
I
G
P
Y
L
K
A
Q
A
D
K
Q
G
V
I
Y
S
L
G
A
G
D
E
P
S
S
C
M
-
E
L
I
E
-
F
V
---
S
A
L
G
Y
E
V
V
S
A
G
K
G
K
-------------
N
N
P
L
N
-------------------------------------
33
Fugue
57.81
12%
-44
- C3 -
1FFV
1
DCMM_HYDPS
C:
[1-287]
-------------------------------------------------------------------------------------------------------------------------------MIP
P
R
F
E
Y
H
A
P
KS
V
G
E
A
V
A
L
L
G
Q
L
GSD
A
K
L
L
A
GG
H
S
L
L
P
M
M
K
L
R
F
A
Q
P
E
H
L
I
D
I
N
R
I
P
E
L
R
G
I
R
E
E
G
S
T
V
V
I
G
A
M
T
V
E
-----
N
D
--
L
I
-----------
S
S
---------
P
I
V
Q
A
R
-------------------
L
P
L
L
A
E
A
A
K
L
I
AD
P
Q
-----
V
R
N
R
G
T
I
G
G
D
I
A
H
GDPGND
H
P
A
L
S
I
A
V
E
A
H
F
V
L
E
----
G
P
N
G
R
R
T
V
P
A
D
---
G
F
FLGTY
M
T
L
L
E
E
N
E
---
V
M
------
V
E
I
------
R
V
P
A
F
A
Q
G
T
G
W
A
Y
E
K
--
L
K
R
K
----TGDWAT
A
G
C
A
V
---
V
M
R
K
S
---------
G
N
T
V
---------
S
H
I
R
I
A
L
T
N
V
A
P
T
A
L
R
A
E
-
A
A
E
A
-
A
L
LGK
A
F
T
K
E
A
V
Q
A
A
A
D
A
A
-------------
I
A
I
C
E
P
----
A
E
D
-LRGD
A
D
Y
K
T
A
M
A
G
Q
M
V
K
R
A
L
N
A
A
W
A
R
CA
4
PsiBlast_PDB
57.77
23%
36
- C8 -
3UPY
2
?
A:
[96-198]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
D
D
--
N
D
-----
L
I
L
S
N
P
L
I
---
D
V
------
I
I
D
------
A
T
G
I
P
E
V
G
A
E
T
G
I
A
A
--
I
R
N
G
---
K
---------
H
L
---
V
M
M
N
V
E
----
A
---
D
V
T
I
G
P
Y
L
K
A
Q
A
D
K
Q
G
V
I
Y
S
L
G
A
G
D
E
P
S
S
C
M
-
E
L
I
E
-
F
V
---
S
A
L
G
Y
E
V
V
S
A
G
K
G
K
-------------
N
N
P
L
N
-------------------------------------
6
PsiBlast_PDB
57.07
30%
-13
- C6 -
3P4G
4
?
A:
[168-232]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
S
G
I
V
N
M
---
G
T
------
D
N
D
------
T
V
E
V
G
R
T
I
N
A
S
G
K
V
L
--
L
D
T
G
D
D
-
S
---------
L
L
---
V
S
G
D
L
F
----
G
---
E
V
D
G
---------
G
T
G
N
D
T
I
I
I
A
G
K
V
S
G
N
I
Q
--------------------------------------------------------------------------------
12
HHSearch
55.79
18%
-84
- C8 -
1OR7
-
RSEA_ECOLI
C:
[3-66]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
E
Q
L
S
A
L
M
D
G
E
T
L
D
S
E
---
L
L
N
E
L
A
H
N
-----
P
E
--
M
Q
-----------
K
T
-------
W
E
S
Y
H
L
I
R
D
S
M
R
------
G
D
-
T
P
E
V
L
H
F
D
I
S
S
R
V
M
A
A
I
--
E
E
-----
E
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
13
HHSearch
54.66
23%
-67
- C6 -
2N3D
-
?
A:
[65-120]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
G
D
V
---
R
V
--------
G
------
R
L
T
V
G
E
T
G
H
V
E
G
S
V
Y
--
A
--
E
---
A
---------
V
E
---
V
R
G
R
V
V
----
G
---
A
I
T
S
-----------
K
Q
V
R
L
Y
G
T
S
Y
V
D
G
D
I
T
-
H
E
-----------------------------------------------------------------------------
29
Fugue
52.83
13%
24
* C7 *
1QOY
-
HLYE_ECOLI
A:
[-4-298]
----------------------------------------------------------------------------------------------------------------------------
S
M
A
E
I
V
A
D
K
T
V
E
V
V
K
N
A
I
E
T
A
D
G
A
L
D
L
Y
N
KYLDQVIP
W
Q
T
F
D
E
T
I
K
E
L
S
R
F
K
Q
E
Y
S
Q
A
A
S
V
L
V
G
D
I
K
T
L
L
M
D
S
Q
D
K
Y
F
E
A
T
-----
Q
T
--
V
Y
-----------
E
W
-------
C
G
V
A
T
Q
L
L
A
A
Y
I
L
L
F
DEY
N
E
-
K
K
A
S
A
Q
K
D
I
L
I
K
V
L
D
D
G
--
I
T
-----
K
L
N
E
A
Q
-
K
S
L
L
V
S
-------
S
Q
S
F
N
N
A
S
G
K
L
L
A
L
----
D
S
Q
L
T
N
D
F
S
E
K
S
--
S
Y
-----
F
Q
S
Q
V
D
K
I
---
R
K
------
E
A
Y
A
G
A
AAG
V
V
V
G
P
F
G
L
I
I
S
Y
S
I
A
A
G
V
V
E
G
---
K
---------
L
I
---
P
E
L
K
N
K
----
L
---
K
S
V
Q
---------
N
F
F
T
T
L
S
N
T
V
K
Q
A
N
K
D
I
D
-
A
A
K
L
-
K
L
---
T
T
E
I
A
A
I
G
E
I
K
T
E
T
E
T
TRFYVDYD
D
L
M
L
S
L
L
K
E
----
A
A
K
K
M
I
N
T
C
N
E
Y
Q
K
R
H
GKKTLF----------
2
PsiBlast_PDB
51.07
30%
2
- C9 -
3DUG
-
?
A:
[7-48]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
F
L
---
I
K
------
S
K
G
------
Y
L
D
I
Q
T
G
E
I
I
K
A
D
L
L
--
I
R
N
G
---
K
---------
I
A
---
E
I
G
K
I
N
----
T
K--
D
A
T
V
---------
I
S
------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
50.43
30%
0
- C9 -
3BE7
-
?
A:
[5-50]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
E
D
F
L
---
I
K
------
S
K
G
------
Y
L
D
I
Q
T
G
E
I
I
K
A
D
L
L
--
I
R
N
G
---
K
---------
I
A
---
E
I
G
K
I
N
----
T
K--
D
A
T
V
---------
I
S
------------------------------------------------------------------------------------------------
28
Fugue
50.12
18%
-34
- C5 -
2AKL
1
?
A:
[23-138]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
V
S
T
L
P
------
P
C
-
P
Q
C
N
S
E
Y
T
Y
E
D
G
A
L
L
V
C
--
P
E
-----
C
A
-----
H
E
W
S
P
N
-------
E
A
A
T
A
S
D
D
G
K
V
I
K
D
----
S
V
G
--
N
V
L
Q
D
G
D
--
T
I
-----
T
V
I
K
--
D
L
---
K
V
------
K
G
S
------
S
L
V
V
K
V
G
T
K
V
K
N
-
I
R
--
L
V
D
G
---
D
---------
H
D
---
I
D
C
K
I
D
----
G
---
I
G
A
M
---------
K
L
K
S
E
F
V
R
K
V
G
S
--------------------------------------------------------------------------------------
8
PsiBlast_PDB
49.89
25%
42
- C8 -
1ITX
3
CHIA1_BACCI
A:
[50-134]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
W
N
G
I
H
--
G
N
-----
P
D
P
S
G
P
N
P
---
V
T
W
T
CQNE
K
S
Q
------
T
I
N
V
P
N
G
T
I
V
L
G
D
P
W
--
I
D
T
G
---
K
---------
T
F
---
A
G
D
T
W
D
QPIA
G
---
N
I
N
Q
---------
L
N
K
L
K
------
Q
T
N
P
N
L
K
-
T
I
I
S
-
V
G
---
G
W
T
W
-----------------------------------------------------------------