@TOME V2.3
(Nov 2016)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : bsu01870: (2016-06-03 )
MSANLTDFVTKTIEEMNSFDRENMECIKKLIRKAIDFYHLKSYEEVEETHSGNVRFLHVHSMMEENMLSKMIVVTRNGKTDLDIEGVYEGYVVREY
Atome Classification :
(20 SA)
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------.....-.------.-..10...---....-.-------20.....--...30........40----....------....50.-.......-------60.--.......---70-...--....------.80...---------.....90.....------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MSA
N
L
-
T
------
D
-
F
V
T
K
T
I
E
---
E
M
N
S-F-------
D
R
E
N
M
E
C
--
I
K
K
L
I
R
K
A
I
D
F
Y
HL
K
----
S
Y
E
E
------
V
E
E
THSG-
N
V
R
F
L
H
V
-------
H
S
M
--
M
E
E
N
M
L
S
---
K
M
-
I
V
V
--TRNG------KTDL
D
I
---------
E
G
V
YE
G
Y
V
V
REY------------------------------------------------------------------------------------------------------------------------
28
Fugue
74.50
21%
-84
- C10 -
2HGC
-
YJCQ_BACSU
A:
[5-82]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
L
-
R
------
Y
-
A
I
L
K
E
I
F
---
E
G
N
T
P
L
-------
S
E
N
D
I
G
V
--
T
E
D
Q
F
D
D
A
V
N
F
L
K
R
E
----
G
Y
-------------------
I
I
G
V
-------
H
Y
S
--
D
D
R
P
H
L
Y
---
K
L
G
P
E
L
--
T
E
K
G
------
E
N
Y
L
K
E
---------
N
G
T
W
S
K
A
-----------------------------------------------------------------------------------------------------------------------------
29
Fugue
65.16
15%
-59
- C5 -
1KZH
5
PFP_BORBU
A:
[4-553]
S
L
F
K
Q
E
R
Q
K
Y
I
P
K
L
P
NILKKDFNN
I
S
L
V
Y
G
E
N
T
E
A
IQD
R
Q
A
L
K
E
F
F
KNTYG
L
P
I
I
S
F
T
E
G
ESSLSFS
K
A
L
N
I
G
I
I
L
S
G
GPAPG
G
H
N
V
I
S
G
V
F
D
A
I
K
K
F
NPN
S
K
L
F
G
F
K
GG
P
L
G
L
L
E
N
D
K
I
E
LT
E
S
L
I
N
S
Y
RNTGGFDIVSSGR
T
K
I
E
T
E
E
H
Y
N
K
A
L
F
V
A
K
E
N
NLN
A
I
I
I
I
G
G
D
D
S
N
T
N
A
A
I
L
A
E
Y
F
K
K
N
GEN
I
Q
V
I
G
V
P
K
T
IDADLRNDHIEISFG
F
D
S
A
T
K
I
Y
S
E
L
I
G
N
L
C
R
D
A
M
S
T
K
K
Y
W
H
F
V
K
L
M
GRSAS
H
V
A
L
E
C
A
L
K
THPN
I
C
I
V
S
E
E
V
L
A
K
KKT
L
S
E
I
I
D
E
M
V
S
V
I
L
K
R
S
L
N
GDN
F
G
V
V
I
V
P
EGLIEFI
P
E
V
K
S
L
M
L
E
L
C
D
I
F
D
K
N
EGEF
K
G
L
N
I
-
E
------
K
-
M
K
E
I
F
V
A
---
K
L
S
D
-
Y
-------
M
K
G
V
Y
L
S
--
L
P
L
F
I
Q
F
E
L
----
I
K
----
S
I
L
E
------
R
D
P
H
G
N
F
-
N
V
S
R
V
P
T
-------
E
K
L
--
F
I
E
M
I
Q
S
---
R
L
-
N
D
M
--
K
K
R
G
EY----
K
G
S
F
T
P
---------
V
D
H
F
F
G
Y
E
G
R
S
A
FPS
N
F
D
S
D
Y
C
Y
S
L
G
Y
N
A
V
V
L
I
L
N
GLTGYMSCIKNLNLKPTD
W
I
A
G
G
V
P
LTML
M
N
M
E
E
R
YGEK
K
P
V
I
K
K
A
L
VDLEG
R
P
F
K
E
F
V
K
N
R
D
K
W
A
L
N
NL
Y
L
Y
P
G
P
VQYFGS
S
E
I
V
D
EIT
E
T
L
K
L
E
L
23
Fugue
64.65
18%
-47
- C6 -
4X2Z
1
A:
[9-309]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------Q
K
T
I
Y
L
T
EDGV
K
Y
R
S
I
V
L
K
PGDSLGQFG
Q
V
Y
A
K
NKIVFTADDVEDK
E
I
L
Y
V
P
T
TD
K
S
I
L
E
Y
Y
GLD
A
Q
K
Y
V
I
Y
L
Q
T
LA
Q
K
W
N
V
Q
Y
RDN
F
L
I
L
EWRDGN
C
W
I
S
S
A
I
V
L
L
Q
A
A
K
I
R
F
K
G
F
L
T
E
A
W
A
K
L
L
G
GDP
T
D
F
V
A
W
C
Y
A
S
C
TAKVGDFSD
A
N
W
L
L
A
N
L
A
E
H
F
D
A
D
Y
-
T
------
N
A
F
L
K
K
R
V
S
C
NC
G
I
K
S
-
Y
-------
E
L
R
G
L
E
A
--
C
I
Q
P
V
R
-
A
T
N
L
L
H
F
K
---------------
T
Q
Y
S
N
C
-
P
T
C
G
A
N
N
-------
T
D
E
--
V
I
E
A
S
L
P
---
Y
L
-
L
L
F
--
A
T
D
G
------
P
A
T
V
D
C
---------
D
E
D
A
V
G
T
V
V
F
V
G
STNS
G
H
C
Y
T
Q
A
AG
Q
A
F
D
NLAKD
R
K
F
G
KKSPYI
T
A
M
Y
T
R
F
A
F
K
N
ETS--------------------------------------------------------------------------
32
Fugue
63.11
15%
-59
- C11 -
1V74
1
A:
[1-107]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
N
D
P
L
-
D
SGRFS
R
K
-
Q
L
D
K
K
Y
K
---
H
A
G
D
-
F
GISDTKK
N
R
E
T
L
T
K
--
F
R
D
A
I
E
E
H
L
S
D
K
D
T
V
----
E
K
G
T
------
Y
R
R
E
K
G
S
-
K
V
Y
F
-
N
P
-------
N
T
M
------------
N
V
-
V
I
I
--
K
S
N
G
EFL
S
G
W
K
I
N
P
D
A
---------
D
N
G
R
I
Y
L
E
T
G
E
L
------------------------------------------------------------------------------------------------------------------------
31
Fugue
62.52
10%
-93
- C9 -
2RH3
-
VIRC2_AGRFC
A:
[82-202]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------I
Q
V
F
L
S
A
R
P
P
A
------
P
-
E
V
S
K
I
Y
D
---
N
L
I
L
---------
Q
Y
S
P
S
K
S
--
L
Q
M
I
L
R
R
A
L
G
D
F
E
N
M
L
A
D
G
S
F
R
A
APK
S
Y
P
I
P
H
T
A
F
E
-
K
S
I
I
V
Q
T
-------
S
R
M
--
F
P
V
S
L
I
E
---
A
A
-
R
N
H
F
D
P
L
G
L
------
E
T
A
R
A
F
---------
G
H
K
L
A
T
A
A
L
A
C
F
F
A
R
E
K
A
T
NS---------------------------------------------------------------------------------------------------------------
27
Fugue
61.81
17%
-8
* C11 *
4CZX
3
PAN2_NEUCR
A:
[1-324]
-------------------------------------------------------------------------------------------------------------------------------------------P
H
M
M
D
SRDWTQL
G
C
V
A
Y
PSPIHPDYHAGPAS
T
I
A
F
D
NQDE
L
L
W
I
G
T
QK
G
F
A
G
S
F
I
G
RELKR
F
T
A
F
R
IHPETDGPLR
Q
F
L
F
V
DK
G
V
I
F
L
G
SR
S
V
Y
M
A
A
RSGVPIWSIRHESMQDLR
A
M
S
F
T
SKGTS
E
I
L
V
A
G
WQN
K
M
L
V
I
DVNKGEVV
K
E
L
P
T
QDQYS
F
L
K
M
S
RYI
C
A
A
T
NKG
T
V
N
I
L
DPITFTIKKQWQAHGAFIN
D
L
D
T
S
N
-
D
------
F
-
I
V
T
C
G
G
S
---
H
R
Q
T
-
H
-------
N
T
P
A
-----
I
L
D
P
Y
V
K
V
F
D
L
K
N
M
S
----
A
M
N
P
------
V
P
-------
F
A
P
L
A
A
-------
H
V
R
--
M
H
P
R
M
L
T
---
T
A
-
I
V
V
--
N
Q
A
G
--------
Q
I
H
V
---------
T
D
L
L
N
P
S
N
S
Q
V
C
Y
T
Q
P
QGVVL
H
F
D
V
S
RTGE
G
K
A
L
A
D
NKH
N
T
Y
V
W
G
S
PNKIQFTE------------------------------------------------------------------------------
24
Fugue
60.55
10%
-47
- C9 -
3EOI
-
?
A:
[2-124]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------LSRTVHHQ
Q
T
A
E
I
T
Q
Q
-
A
------
A
-
D
F
I
R
Y
M
N
---
A
I
N
D
-
Y
-------
L
Y
Q
H
P
E
R
--
R
A
A
G
G
Q
L
T
S
A
Q
L
G
L
P
----
A
T
K
N
------
V
S
H
L
I
S
Q
-
Q
R
V
F
V
W
A
KEKPG
L
M
G
A
L
--
L
E
Q
S
G
D
S
---
A
L
-
L
A
R
--
V
E
N
G
------
R
L
L
D
T
H
GRRISITLP
A
V
I
P
D
Q
V
I
I
W
M
N
------------------------------------------------------------------------------------------------------------------------
6
PsiBlast_PDB
57.51
27%
-58
- C10 -
4NIQ
1
VPS4_YEAST
A:
[6-60]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
-
F
L
T
K
G
I
E
----------------------------
L
V
Q
K
A
I
D
L
D
T
A
T
----
Q
Y
E
E
------
A
Y
T
A
Y
Y
N
-
G
L
D
Y
L
M
L
-------
A
L
K
--
Y
E
K
N
P
K
S
---
K
D
-
L
I
R
--
A
K
-----------------------------------------------------------------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
57.37
27%
-52
- C10 -
2V6X
1
VPS4_YEAST
A:
[8-62]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
-
F
L
T
K
G
I
E
----------------------------
L
V
Q
K
A
I
D
L
D
T
A
T
----
Q
Y
E
E
------
A
Y
T
A
Y
Y
N
-
G
L
D
Y
L
M
L
-------
A
L
K
--
Y
E
K
N
P
K
S
---
K
D
-
L
I
R
--
A
K
-----------------------------------------------------------------------------------------------------------------------------------------------------------
11
PsiBlast_PDB
57.22
25%
23
- C4 -
2P84
-
?
A:
[4-79]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
P
---
K
F
R
E
-
F
-------
D
R
E
-----------
R
H
R
T
D
Y
Q
K
G
M
----
S
Y
A
E
------
Q
Q
D
F
D
M
G
F
T
I
W
F
D
H
I
-------
E
D
L
DL
I
E
K
D
G
T
I
---
N
R
-
I
V
M
--
M
S
T
G
------
L
K
D
K
N
V
---------
K
E
I
Y
E
S
D
I
V
R
--------------------------------------------------------------------------------------------------------------------------
26
Fugue
56.10
16%
-24
* C9 *
2K5J
-
?
A:
[1-80]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MNSLAGID
M
G
R
I
L
-
L
------
D
-
L
S
N
E
V
I
K
---
Q
L
D
D
-
L
-------
E
V
Q
R
N
L
P
--
R
A
D
L
L
R
E
A
V
D
Q
Y
L
I
N
----
Q
S
Q
T
------
A
R
T
S
V
P
G
-
I
W
Q
-----------------------------------
G
C
E
------
E
D
G
V
E
-------------
Y
Q
R
K
L
R
E
E
W
------------------------------------------------------------------------------------------------------------------------
12
PsiBlast_PDB
50.68
23%
-8
- C10 -
4Q2W
2
A:
[138-220]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
F
L
F
K
D
L
T
---
E
A
T
N
-
Y
-------
S
A
E
E
L
D
K
--
V
F
S
L
L
N
I
N
N
S
L
L
E
N
K
G
A
--
T
F
K
E
------
A
E
E
H
Y
H
I
-
N
A
L
Y
L
L
A
-------
H
S
A
--
L
E
S
N
W
G
R
---
S
K
-
I
A
K
--
D
K
N
----------------------------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
50.04
28%
-22
* C7 *
3IZY
-
IF2M_BOVIN
P:
[304-363]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
L
----
A
Y
D
V
------
V
C
E
D
Y
G
G
-
D
V
Q
A
V
H
V
-------
S
A
L
--
T
G
E
N
M
M
A
LAE
A
T
-
I
A
L
--
A
E
M
L
------
E
L
K
A
D
P
---------
T
G
A
V
E
G
T
V
I
E
S
F
------------------------------------------------------------------------------------------------------------------------
5
PsiBlast_PDB
49.21
29%
-22
- C10 -
2HUN
1
?
A:
[44-103]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
P
A
N
L
-
K
------
D
-
L
E
D
D
P
R
Y
---
T
F
V
K
-
G
-------
D
V
A
D
Y
E
L
--
V
K
E
L
V
R
K
V
D
G
V
V
H
L
A
----
A
E
S
H
------
V
D
R
S
I
S
S
-
P
E
I
F
L
H
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
21
HHSearch
48.29
13%
-90
* C8 *
2KPM
-
?
A:
[42-95]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
-
G
------
N
-
F
G
N
Y
L
N
K
---
L
Q
P
D
-
F
-------
D
S
R
L
Y
G
Y
KK
L
S
D
L
V
K
A
R
T
D
L
F
V
T
E
----
E
R
----------
Q
V
P
G
S
-
T
Q
K
A
L
Y
L
-------
R
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
PsiBlast_PDB
47.84
35%
-27
- C10 -
4I9E
-
RAPF_BACSU
A:
[165-195]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Y
A
R
Q
----
A
Y
E
I
------
Y
K
E
H
E
A
Y
-
N
I
R
L
L
Q
C
-------
H
S
L
--
F
A
T
N
F
L
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10
PsiBlast_PDB
47.66
35%
-33
- C10 -
4I9C
1
RAPF_BACSU
A:
[163-193]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Y
A
R
Q
----
A
Y
E
I
------
Y
K
E
H
E
A
Y
-
N
I
R
L
L
Q
C
-------
H
S
L
--
F
A
T
N
F
L
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
PsiBlast_PDB
46.97
35%
-32
- C10 -
3ULQ
-
RAPF_BACSU
A:
[165-195]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Y
A
R
Q
----
A
Y
E
I
------
Y
K
E
H
E
A
Y
-
N
I
R
L
L
Q
C
-------
H
S
L
--
F
A
T
N
F
L
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------
18
HHSearch
46.73
12%
-53
- C10 -
1WHR
-
R3HD2_HUMAN
A:
[164-235]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
I
-
L
------
E
-
F
I
N
D
N
N
N
---
Q
F
K
K
-
F
-------
P
Q
M
-
T
S
Y
--
H
R
M
L
L
H
R
V
A
A
Y
F
G
M
D
----
H
N
V
D
------
Q
----
T
G
---
K
A
V
I
I
N
K
T
S---
N
T
R
--
I
P
E
Q
R
F
S
---
E
H
-
I
K
D
--
E
K
N
T
---------------------------------------------------------------------------------------------------------------------------------------------------------
20
HHSearch
45.04
28%
-45
* C10 *
5DYN
2
?
A:
[79-114]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
T
I
E
---
N
Y
P
E
-
Q
-------
N
S
A
D
A
N
V
--
M
K
K
V
I
S
T
A
F
N
Q
Y
K
A
E
----
K
Y
G
M
------
V
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------