@TOME V2.3
(Nov 2016)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : bsu01880: (2016-06-03 )
MKKSKGSIESEISKSITQWEKDYLGRGSVSVKTDILRDMIIVNLKGILTPAEYVVCGSKEGMLSIKQTRSELVESGIEGLKDIILKITGEKVKSFHTDLSSRTGERVMVFKLCNDLEKNLEKIL
Atome Classification :
(20 SA)
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------.........10...---.....20...-------.....30..---.----------.....40...-------..-------------------...50.--......---.-60------.....------------...70-------..-----------------.------......80---....-----...---------.90..-......100-.......110..-.....120..------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MKKSKG
S
I
E
S
E
I
S
K
---
S
I
T
Q
W
E
K
D
YL-------GRGS
V
S
V
K
T
---
D
----------
I
L
R
D
M
I
I
V
NL-------KG-------------------ILTPA
E
--
Y
V
V
CGS---K-EG------
M
L
S
I
K
------------
Q
T
R
S
--------
E
L
-----------------
V
------
E
S
G
I
E
G
L
K
---
D
I
I
L
-----
K
I
T
---------
G
E
K
V
K
-
S
F
H
T
D
L
SSR-TG
E
R
V
M
V
F
K
L
C
N
-
D
L
E
K
N
L
E
K
IL------------------------------------------------------------------------------------------------------------------------------------
31
Fugue
75.26
20%
-69
- C4 -
4QMF
1
KRR1_YEAST
B:
[7-181]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------E
S
S
F
M
T
L
F
P
KYR
E
S
Y
L
K
T
I
W
N
D
V
T
R
A
L
D
K
---
H
N
I
A
C
V
L
D
-
L
-------
V
E
G
S
M
T
V
K
T
---
T
RKTYDPAI
I
L
K
A
R
D
L
I
K
L
L
A
-------
R
S
-------------------
V
P
F
P
Q
A
--
V
K
I
L
Q
D
---
D
-
M
A
------
C
D
V
I
K
IGNFVTN
K
E
R
F
V
K
R
R
Q
--------
R
L
-----------------
V
GPNG
N
T
L
K
A
L
E
L
L
T
---
K
C
Y
I
-----
L
V
Q
---------
G
N
T
V
S
-
A
M
G
P
F
K
G
L
K
-
E
V
R
R
V
V
E
D
C
M
K
N
I
H
P
I
Y
H
I
K
E
L
M
I
K
R
E
L
A
K
R----------------------------------------------------------------------------------------------------------------------------
28
Fugue
71.58
23%
-41
- C3 -
1FSZ
1
?
?:
[23-231]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------S
P
E
D
K
E
L
L
E
Y
L
Q
QT
K
A
K
I
T
V
V
G
C
G
G
A
G
N
N
T
I
T
R
L
K
M
E
GIE
G
A
K
T
V
A
I
N
TD
A
Q
Q
L
I
R
TKADKKILIGKKLTRGLGAGGN
P
K
I
G
E
E
A
A
K
E
S
A
E
E
I
K
A
A
I
Q
D
---
S
D
M
V
F
I
T
C
G
L
-------
G
G
G
T
G
T
G
S
A
---
P
----------
V
V
A
E
I
S
K
K
---------
I
G
-------------------
A
L
T
V
A
V
--
V
T
L
P
F
V
---
M
-
E
G
-----------------------
K
V
R
M
--------
K
N
-----------------
A
------
M
E
G
L
E
R
L
K
Q
H
T
D
T
L
V
-----
V
I
P
---------
N
E
K
L
F
-
E
I
V
P
N
M
P
L
K
-
L
A
F
K
V
A
D
E
V
L
I
N
-
A
V
K
G
L
V
E
L
I
T
KDGL--------------------------------------------------------------------------------------------------------------------------------
30
Fugue
68.68
21%
-17
* C3 *
4M59
3
?
A:
[6-714]
PD
A
Q
V
L
V
L
A
I
S
S
HPLPT
L
A
A
F
L
A
S
R
R
D
E
L
L
R
AD
I
T
S
L
L
K
A
L
E
L
S
GH
W
E
W
A
L
A
L
L
R
W
A
G
K
E
GAAD
A
S
A
L
E
M
V
V
R
A
L
G
R
E
GQ
H
D
A
V
C
A
L
L
D
ETPLPPG
S
R
L
D
V
R
A
Y
T
T
V
L
H
A
L
S
R
A
GR
Y
E
R
A
L
E
L
F
A
E
L
R
R
Q
G
V
A
P
T
L
V
T
Y
N
V
V
L
D
V
Y
G
R
M
GRS
W
P
R
I
V
A
L
L
D
E
M
R
A
A
G
V
E
P
D
G
F
T
A
S
T
V
I
A
A
C
S
R
D
GL
V
D
E
A
V
A
F
F
E
D
L
K
A
R
GHAPS
V
V
T
Y
N
A
L
L
Q
V
F
G
KAGN
Y
T
E
A
L
R
V
L
G
E
M
E
Q
N
G
C
Q
P
D
A
V
T
Y
N
E
L
A
G
TE
E
A
A
R
C
L
D
T
M
A
SPN
A
F
T
Y
N
T
V
M
T
A
Y
G
N
V
GKV
D
E
A
L
A
L
F
D
Q
M
KKT
G
F
V
P
N
V
N
T
Y
N
L
V
L
G
M
L
G
K
K
SR
F
T
V
M
L
E
M
L
G
E
M
S
R
S
G
C
T
P
N
R
V
T
W
N
T
M
L
AVSGKRG
M
E
D
Y
V
T
R
V
L
E
G
M
R
S
S
G
V
E
L
S
R
D
T
Y
N
T
L
I
A
A
Y
G
R
C
GS
R
T
N
A
F
K
M
Y
N
E
M
T
S
A
G
F
T
P
C
I
T
T
Y
N
A
L
L
N
V
L
S
R
Q
GD
W
S
T
A
Q
S
I
V
S
K
M
R
T
K
G
F
K
P
N
E
Q
S
Y
S
L
L
L
Q
C
Y
A
K
G
G
N
-----
V
A
---
G
I
A
A
I
E
N
E
V
Y
-------
G
S
G
A
V
F
P
S
W
---
V
----------
I
L
R
T
L
V
I
A
N
F
-------
K
-------------------------------
C
R
R
---
L
-
D
G
------
M
E
T
A
F
------------
Q
-----------
E
V
-----------------
K
------
A
R
G
Y
N
P
D
L
---
V
I
F
N
-----
S
M
L
---------
S
I
Y
A
K
-
N
G
M
Y
S
K
A
T
E
-
V
F
D
S
I
K
R
S
G
L
S
P
-
D
L
I
T
Y
N
S
L
M
D
M
Y
A
K
C
SE
S
W
E
A
E
K
I
L
N
Q
L
K
C
SQTMKPD
V
V
S
Y
N
T
V
I
N
G
F
C
K
QGL
V
K
E
A
Q
R
V
L
S
E
M
V
A
D
G
M
A
P
C
A
V
T
Y
H
T
L
V
G
G
Y
S
S
LEMF
S
E
A
R
E
V
I
G
Y
M
V
QHGLKPMEL
T
Y
R
R
V
V
E
S
Y
C
R
AF
E
E
A
R
G
F
L
S
EVKAL
E
A
Y
I
E
D
A
3
PsiBlast_PDB
66.61
26%
-83
- C5 -
1XZQ
-
?
A:
[388-470]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
G
E
G
L
E
K
L
E
E
---
S
I
Y
R
E
T
Q
E
I
F
-------
E
R
G
S
D
S
L
I
T
---
N
----------
L
R
Q
K
Q
L
L
E
N
V
-------
K
G
-------------------
H
L
---
E
--
D
A
I
K
S
L
---
K
-
E
G
------
M
------------------
P
V
--------
D
M
-----------------
A
------
S
I
D
L
E
R
A
L
---
N
L
L
D
-----
E
V
T
---------
G
---
R
-
S
F
R
E
D
L
---------------------------------------------------------------------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
63.58
26%
-70
- C5 -
1XZP
2
MNME_THEMA
A:
[388-470]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
G
E
G
L
E
K
L
E
E
---
S
I
Y
R
E
T
Q
E
I
F
-------
E
R
G
S
D
S
L
I
T
---
N
----------
L
R
Q
K
Q
L
L
E
N
V
-------
K
G
-------------------
H
L
---
E
--
D
A
I
K
S
L
---
K
-
E
G
------
M
------------------
P
V
--------
D
M
-----------------
A
------
S
I
D
L
E
R
A
L
---
N
L
L
D
-----
E
V
T
---------
G
---
R
-
S
F
R
E
D
L
---------------------------------------------------------------------------------------------------------------------------------------------------------------
33
Fugue
57.36
19%
-31
- C4 -
1G2A
2
DEF_ECOLI
A:
[1-164]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------S
V
L
Q
V
L
H
I
PDER
L
R
K
V
A
K
P
V
E
-
E
V
N
A
---
E
I
Q
R
I
V
D
D
M
F
E
T
M
Y
A
E
E
G
I
G
L
A
A
T
Q
V
---
D
----------
I
H
Q
R
I
I
V
I
D
V
-------
S
E
NRD
E
R
L
V
------------
L
I
N
P
E
L
--
L
E
K
S
G
E
T
G
I
E
-
E
G
------
C
L
S
I
P
------------
E
Q
R
A
--------
L
V
P
R
A
E
K
V
K
----------
I
------
R
A
L
D
R
D
G
K
---
P
F
E
L
-----
E
A
D
---------
G
L
L
A
I
-
C
I
Q
H
E
M
D
H
L
-
V
G
K
L
F
M
D
Y
L
S
P
L
-
K
Q
Q
R
I
R
Q
K
V
E
K
L
D
R
L-------------------------------------------------------------------------------------------------------------------------------
24
Fugue
56.79
15%
-54
- C3 -
1DVO
-
FINO3_ECOLX
A:
[33-184]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------PP
K
W
K
V
K
K
Q
K
L
A
E
K
A
A
R
---
E
A
E
L
T
A
K
K
A
Q
-------
A
R
Q
A
L
S
I
Y
L
---
N
----------
L
P
T
L
D
E
A
V
N
T
LKPWW--
P
G
-------------------
L
F
D
G
D
T
PR
L
L
A
C
G
I
---
R
-
D
V
------
L
L
E
D
V
------------
A
Q
R
N
IPLS
H
K
K
L
R
R
-----------------
A
------
M
K
A
I
T
R
S
E
---
S
Y
L
C
-----
A
M
K
AG
A
C
R
Y
D
TE
G
Y
V
T
E
-
H
I
S
Q
E
E
E
V
Y
-
A
A
E
R
L
D
K
I
R
R
Q
N
-
R
I
K
A
E
L
Q
A
V
L
D-----------------------------------------------------------------------------------------------------------------------------------
26
Fugue
55.65
25%
-47
- C3 -
2MN4
-
?
A:
[1-94]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
T
P
E
Q
R
E
F
L
P
E
I
L
A
---
E
I
I
A
-------------
N
L
D
P
T
K
I
L
E
---
E
----------
L
L
R
R
--------------
G
-------------------
L
L
T
P
A
E
--
L
Q
E
V
L
D
---
L
-
K
T
------------------------------------------------------
P
------
E
E
Q
A
K
K
L
I
---
D
F
I
L
-----
K
L
S
---------
P
A
D
V
Q
-
A
R
I
N
V
L
R
A
H
--
G
Y
Q
A
L
A
D
K
L
N
K
-
Y
L
T
L
E
-----------------------------------------------------------------------------------------------------------------------------------------
27
Fugue
54.01
20%
-35
* C4 *
1BS4
2
DEF_ECOLI
A:
[1-168]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------S
V
L
Q
V
L
H
I
PDER
L
R
K
V
A
K
P
V
E
-
E
V
N
A
---
E
I
Q
R
I
V
D
D
M
F
E
T
M
Y
A
E
E
G
I
G
L
A
A
T
Q
V
---
D
----------
I
H
Q
R
I
I
V
I
D
V
SENRDE
R
L
V
-------------------
L
I
N
P
E
L
--
L
E
K
S
G
E
T
G
I
E
-
E
G
------
C
L
S
I
P
------------
E
Q
R
A
--------
L
V
P
R
A
E
K
V
K
I
R
A
L
D
RDG
K
P
F
------
E
L
E
A
D
G
L
L
---
A
I
C
I
-----
Q
H
E
---------
M
D
H
L
V
G
K
L
F
M
D
Y
L
S
P
-
L
K
Q
Q
R
I
R
Q
K
V
E
K
-
L
D
R
L
K
A
R
A
--------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
50.37
25%
-37
- C5 -
3OBW
-
PELO_SULSO
A:
[195-317]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
F
F
K
E
E
V
S
K
K
V
N
A
I
L
K
N
K
K
I
Y
I
-------
D
S
V
S
S
A
T
R
A
G
L
H
E
----------
V
L
K
R
D
I
I
----------
D
K
-------------------
I
M
T
D
Y
E
--
I
A
I
G
A
K
---
K
M
E
K
------
A
M
E
L
L
------------
A
K
Q
P
--------
E
L
-----------------
V
------
T
Y
G
L
E
Q
V
K
---
N
A
I
E
-----
M
G
A
---------
V
E
T
V
L
-
V
I
E
D
L
L
S
S
D
-
E
Q
E
R
L
T
I
E
R
M
L
E
-
D
I
E
N
K
R
G
E
V
I
------------------------------------------------------------------------------------------------------------------------------------
7
HHSearch
47.50
10%
-57
- C5 -
4HHU
1
?
A:
[13-61]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
E
A
L
E
K
A
L
K
E
---
M
I
R
Q
A
R
------------
K
F
A
G
T
V
T
Y
---
T
----------
L
S
G
N
R
L
V
I
V
I
-------
T
G
-------------------
V
P
E
Q
V
R
--
K
E
L
A
K
E
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
32
Fugue
45.20
17%
-42
- C1 -
2YZJ
6
?
A:
[12-169]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
L
S
H
Q
S
I
K
N
L
L
G
K
---
V
I
L
N
Y
S
E
E
N
V
-------
R
E
N
G
Y
D
L
R
---------------
I
C
G
D
K
Y
Y
E
L
V
-------
Q
G
AELPEKK
A
T
L
R
E
I
E
FKE
R
A
I
L
S
A
N
H
--
T
Y
L
F
E
S
---
C
-
E
E
FNMPAD
L
A
V
L
I
------------
T
L
K
S
--------
T
L
-----------------
A
------
R
N
G
F
L
A
P
P
---
T
V
I
D
AGYK
G
K
V
N
---------
V
A
I
T
A
-
V
Y
N
S
S
L
K
K
G
M
A
T
H
H
L
I
F
L
K
L
D
K
-
P
T
E
R
L
Y
N
G
K
Y
QGGILI------------------------------------------------------------------------------------------------------------------------------
25
Fugue
41.58
17%
30
- C3 -
2A10
-
CCMK4_SYNY3
A:
[4-107]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
S
A
V
G
S
I
E
T
I
G
F
P
---
G
I
L
A
A
A
D
A
M
V
-------
K
A
G
R
I
----------------------------------------------------------
T
I
V
G
--
Y
I
R
A
G
S
---
A
-
R
F
------
T
L
N
I
R
------------
G
D
V
Q
--------
E
V
-----------------
K
------
T
A
M
A
A
G
I
D
---
A
I
N
R
-----
T
E
G
---------
A
D
V
K
T
-
W
V
I
I
P
R
P
H
E
-
N
V
V
A
V
L
P
I
D
F
S
P
-
E
V
E
P
F
R
E
A
A
E
------------------------------------------------------------------------------------------------------------------------------------
29
Fugue
38.08
10%
-35
- C2 -
3ON0
1
TRAM8_ECOLX
B:
[2-119]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
P
K
I
Q
T
Y
V
N
N
N
V
Y
E
---
Q
I
T
D
L
V
T
I
R
K
-------
Q
E
G
I
E
E
A
S
L
---
S
----------
N
V
S
S
M
L
L
E
L
G
-------
L
R
-------------------
V
Y
M
I
Q
Q
--
E
K
-------
R
-
E
G
------
G
F
N
Q
M
------------
E
Y
N
K
--------
L
M
-----------------
L
------
E
N
V
S
R
V
-
R
---
A
M
C
T
-----
E
I
L
---------
K
M
S
V
L
-
N
Q
E
S
I
A
S
G
N
-
F
D
Y
A
V
I
K
P
A
I
D
K
-
F
A
R
E
Q
V
S
I
F
F
------------------------------------------------------------------------------------------------------------------------------------
5
HHSearch
34.73
16%
55
- C5 -
3ABF
-
?
A:
[14-45]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
P
E
K
K
R
E
L
V
R
---
R
L
T
E
M
A
S
R
L
L
-------
G
E
P
Y
E
E
V
R
V
---
I
----------
L
Y
E
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
21
HHSearch
34.28
19%
60
- C5 -
2XCZ
-
?
A:
[70-101]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
S
R
T
Q
E
V
S
E
---
L
V
C
G
H
I
E
Q
N
L
-------
G
I
P
A
D
R
I
Y
I
---
G
----------
F
E
D
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10
HHSearch
32.35
13%
64
- C5 -
3RY0
-
?
A:
[13-44]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
P
Q
E
V
A
A
L
G
E
---
A
L
T
A
A
A
H
E
T
L
-------
G
T
P
V
E
A
V
R
V
---
I
----------
V
E
E
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
20
HHSearch
31.62
19%
65
- C5 -
2OS5
1
?
A:
[70-101]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
D
D
N
I
R
H
T
Q
---
K
I
T
Q
F
C
Q
D
T
L
-------
K
L
P
K
D
K
V
I
I
---
T
----------
Y
F
D
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
HHSearch
31.01
13%
77
- C5 -
2OPA
-
4OT_BACSU
A:
[13-44]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
E
Q
K
R
N
L
V
E
---
K
V
T
E
A
V
K
E
T
T
-------
G
A
S
E
E
K
I
V
V
---
F
----------
I
E
E
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
19
HHSearch
29.80
13%
49
- C5 -
1UIZ
-
MIF_XENLA
A:
[69-100]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
P
Q
N
K
S
Y
T
K
---
L
L
C
D
I
L
T
K
Q
L
-------
N
I
P
A
N
R
V
Y
I
---
N
----------
Y
Y
D
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------