@TOME V2.3
(Nov 2016)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : bsu01900: (2016-06-03 )
MRFLKALPRRAEVQYDCLDRTLETQENVNLNIRVNVKEVATWGVNTCIISLKGLDNADDRFVLPEVNTALALFPLSIAADCLLMLPCISVVMSISSVMKSVTVE
Atome Classification :
(20 SA)
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------.........10....-..-..20-----.........30......------..40.--..--...-..50..-..----..--..------60....-----.----.-------..----70----..-..-------....80........---.90....-....100..-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
R
F
L
K
ALPRRA
E
V
Q
Y
-
D
C
-LD
R
------
T
LETQENV
N
L
N
I
R
V
N
V
K
------
E
V
A
TW--G
V
--
N
T
C
-
I
I
S
L
KG-LD----NA--DD------
R
F
V
LPE-----V----N-------
T
A
----
L
A
----
L
F
-
P
L
-------
S
I
A
A
D
-
C
L
L
M
L
P
C
I
---
S
V
V
M
S
I
S
-
S
V
M
K
S
VTVE-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
81.03
39%
-80
- C5 -
4S1W
1
?
A:
[273-342]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
A
T
Q
E
N
V
N
L
S
I
R
G
N
V
K
------
E
V
V
A
R
--
G
A
--
H
P
C
-
I
I
S
M
E
G
-
L
E
----
K
E
--
G
D
------
T
Y
V
I
P
H
-----
V
----
H
-------
E
L
----
L
T
----
P
L
-
V
S
-------
V
V
A
L
Q
-
L
I
S
Y
Y
A
A
L
---
H
R
D
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
25
Fugue
79.13
26%
-89
- C4 -
3CWX
-
?
A:
[47-176]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------E
V
N
P
D
I
IKDEVFDF
V
I
V
N
R
V
L
K
K
I
--
K
D
L
K
H
Y
-
D
P
M
I
E
K
I
FEM
G
L
N
V
E
I
Q
I
N
P
E
V
K
D
F
F
T
F
K
------
S
I
S
T
T
--
N
K
--
Q
R
C
-
F
L
S
L
R
G
-----------
E
T
------
R
E
I
L
C
D
----------
N
-------
K
L
----
Y
N
M
---
L
L
-
A
V
-------
F
N
S
Y
D
-
P
N
D
L
L
K
H
I
---
S
T
V
E
S
L
K
-
K
I
F
Y
T
I
T
C
E
A
V
Y--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
24
Fugue
71.45
17%
-99
- C4 -
4XGC
-
?
D:
[5-457]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------D
R
E
L
V
S
I
R
R
F
L
K
E
R
L
Q
RDYTTLRGY
A
K
E
R
S
N
V
R
L
L
L
Q
R
T
A
E
M
G
E
S
N
S
L
-
L
L
-
L
G
P
------
R
G
S
G
K
T
T
L
I
N
S
V
L
A
D
L
L
------
P
N
K
S
F
--
G
E
--
N
T
L
-
I
V
H
L
D
G
-
N
L
----
H
T
--
D
D
------
R
V
A
L
K
S
-----
I
----
T
-------
V
Q
----
M
Q
----
L
E
-
N
A
ADGKVFG
S
F
A
E
N
-
L
A
F
L
L
Q
C
L
KS
K
S
V
I
F
I
L
E
-
E
F
D
L
F
C
A
H
H
NQ
T
L
L
Y
N
L
F
D
V
S
Q
S
AQ
A
P
I
C
V
L
G
V
T
CRLDVIELLE
K
R
V
K
S
R
FSHRQ
V
F
L
F
PSLRR
F
E
D
Y
V
D
L
C
R
D
L
L
S
L
P
T
G
N
S
L
L
L
A
A
E
K
I
Y
N
L
Q
N
IQSGALYFSRNHFDPGE
Y
G
F
S
P
R
L
R
D
A
W
N
K
Q
I
C
K
V
L
A
T
Q
Q
A
R
S
T
L
Q
A
L
H
D
F
DIS
E
A
Y
L
K
N
F
L
F
R
L
V
A
H
LRPQSPHIT
A
E
K
M
A
A
V
G
S
Q
F
E
GD
D
K
I
E
L
L
C
G
LS
V
L
E
L
C
L
I
I
A
I
K
H
H
S
Q
I
Y
DRDSFN
F
E
I
I
Y
A
R
F
S
K
F
A
K
V
STTMQAVER
S
I
V
L
K
A
F
E
H
L
R
I
A
EL
I
M
P
L
TKVQKEF
E
M
H
K
L
ALT
Y
S
Q
I
H
H
C
M
Q
R
YQALPT
E
V
A
Q
W
A
QSS
5
HHSearch
69.47
38%
-97
- C5 -
4S1W
1
?
A:
[286-336]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
V
K
------
E
V
V
A
R
--
G
A
--
H
P
C
-
I
I
S
M
E
G
-
L
E
----
K
E
--
G
D
------
T
Y
V
I
P
H
-----
V
----
H
-------
E
L
----
L
T
P
L
V
S
V
V
-
A
L
-------
Q
L
I
S
Y
-
Y
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
28
Fugue
67.64
12%
-92
- C4 -
1TKN
-
A4_HUMAN
A:
[460-569]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
V
E
A
M
L
N
D
R
R
R
L
A
L
-
E
N
-
Y
I
T
------
A
L
Q
A
V
P
P
R
P
R
H
V
F
N
M
L
K
------
K
Y
V
R
A
--
E
Q
--
K
D
R
-
Q
H
T
L
K
H
-
F
E
----
H
V
--
R
M
V
D
P
K
K
A
A
Q
I
R
S
Q
-----
V
----
M
-------
T
H
----
L
R
----
V
I
-
Y
E
-------
R
M
N
Q
S
-
L
S
L
L
Y
N
V
P
---
A
V
A
E
E
I
Q
-
D
E
V
D
E
L
L
Q
K
E----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
27
Fugue
65.70
15%
-69
* C6 *
3Q1J
1
PHF20_HUMAN
A:
[1-66]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
H
P
P
N
R
R
G
I
S
F
-
E
--
V
G
A
------
Q
L
E
A
R
D
R
L
K
N
W
Y
P
A
H
I
E
------
D
I
D
Y
E
--
E
---
G
K
V
-
L
I
H
F
K
R
-
W
N
----
H
R
--
Y
D
------
E
W
F
C
W
D
-----
S
----
P
-------
Y
-----------
L
R
-
P
L
-------
E
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
23
Fugue
65.48
26%
-27
- C4 -
1DDT
-
?
?:
[200-380]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SCINLD
W
D
V
I
R
D
K
T
K
T
K
I
E
S
L
K
E
H
G
P
I
K
N
K
M
S
E
SPNKTVS
E
E
K
A
K
Q
Y
L
E
E
F
H
Q
T
A
L
E
H
------
P
E
------
L
S
E
L
K
T
V
T
G
T
N
P
V
F
A
G
A
------
N
Y
A
A
W
--
A
V
--
N
V
A
Q
V
I
D
S
E
T
-
A
D
----
N
--------------
L
E
K
-----
T
----
T
-------
A
A
----
L
S
----
I
---------------------
L
P
G
I
---
G
S
V
M
G
I
A
D
G
A
V
H
H
N
T
E
E
I
V
A
Q
S
I
A
L
S
S
L
M
V
A
Q
A
I
P
L
VGELVDIGFAAY
N
F
V
E
S
I
I
N
L
F
Q
V
V
H
N
S
Y
N
R
P
A
Y
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
30
Fugue
62.44
19%
-18
- C4 -
3VWA
-
CEX1_YEAST
A:
[5-544]
PLHMSISNFQFP
Y
T
I
E
ETAITETAL
W
Q
C
F
D
G
T
R
K
ADSL
P
V
T
V
F
K
A
KRSPEN
E
S
L
I
L
N
A
V
H
K
S
K
I
LKIPGLCTVL
E
T
F
D
SDPQS
T
F
I
V
T
E
R
V
V
P
FPWDN
L
G
S
L
S
Q
N
K
F
G
V
E
L
G
I
S
Q
L
L
A
T
L
G
F
L
K
NFVLGTLSKDS
V
F
I
N
IKG
E
W
V
L
F
G
LELCSSKEGLS
A
F
E
F
A
S
R
A
R
S
Y
Y
N
I
I
GSQLPCEDPNT
I
D
S
M
G
L
G
L
L
I
K
S
L
M
APSCLPKDW
I
V
N
V
N
M
I
S
D
GKIT
I
E
N
F
R
K
R
L
E
N
T
E
T
W
R
S
N
P
L
I
N
F
Y
Q
E
L
R
E
L
H
I
K
D
P
Q
G
K
L
V
V
M
S
N
-
L
E
N
------
L
Y
L
E
S
R
E
I
F
R
N
L
T
-----------------------------
P
G
M
I
E
----
N
------------
F
I
I
P
E
-----
L
----
C
-------
E
I
----
I
K
----
L
L
M
T
Q
-------
S
I
S
S
N
A
S
H
K
L
V
P
F
L
---
A
I
V
L
D
L
T
-
S
E
T
N
T
F
P
V
G
F
N
D
L
I
T
Q
S
F
K
LPD
R
Q
V
R
F
L
L
L
I
Y
L
PKLIGPLS
K
S
E
I
S
S
RI
Y
P
H
F
I
Q
G
LTDSD
A
T
L
R
L
Q
T
L
K
T
IPCIVSCLTERQLNNE
L
L
R
F
L
A
K
T
Q
V
DSD
V
E
I
R
T
W
T
V
I
I
I
S
K
I
STILSTS
V
G
N
R
S
N
I
L
A
T
A
F
T
K
S
L
K
DPQ
V
K
P
R
L
A
A
L
Y
G
L
E
K
S
I
ELFD
V
N
T
I
A
N
K
I
L
T
V
I
APGLLDKS
P
I
V
R
G
R
A
K
I
L
F
E
E
Y
L
E
K
L
E
K
E
A
Q
L
IQTN----------------------------------------------------------------------------------------------
9
HHSearch
59.53
21%
-93
- C5 -
2ZJ3
-
GFPT1_HUMAN
A:
[301-355]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
------
Q
V
V
A
R
--
Q
G
--
R
P
V
-
V
I
C
D
K
E
-
D
T
E
T
I
K
N
T
--
K
R
------
T
I
K
V
P
H
-----
S
VDCL
Q
-------
G
I
----
L
S
----
V
I
-
P
L
-------
Q
L
L
A
F
-
H
L
A
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
HHSearch
59.44
24%
-77
- C5 -
2E5F
1
?
A:
[254-304]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
K
------
E
F
K
N
Q
--
G
A
--
K
V
L
-
V
I
S
N
S
P
-
Q
D
L---
G
Q
--
D
Y
------
S
I
E
L
P
R
-----
L
----
S
-------
K
D
----
A
N
P
I
P
Y
L
P
-
I
V
-------
Q
L
L
S
Y
-
Y
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
29
Fugue
58.84
21%
-19
- C6 -
2LT1
-
?
A:
[1-75]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
G
H
M
P
E
G
S
A
S
L
Q
L
-
A
V
-
G
D
R
------
V
V
Y
P
N
Q
G
V
C
R
V
S
A
I
D
V
K
------
E
V
A
----
G
Q
--
K
L
T
-
F
V
T
M
R
--
R
E
----
E
D
--
G
A
------
V
V
M
V
P
E
-----
G
----
K
-------
V
L
----
A
I
-----------------------------------------
G
V
R
K
V
A
S
A
E
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
HHSearch
58.28
17%
-106
- C5 -
4AMV
-
GLMS_ECOLI
A:
[534-588]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
E
------
E
V
R
A
R
--
G
G
--
Q
L
Y
-
V
F
A
D
Q
D
-
A
G
FVSS
D
N
--
M
H
------
I
I
E
M
P
H
-----
V
----
E
-------
E
V
I
A
P
I
F
Y
----
T
V
-
P
L
-------
Q
L
L
A
Y
-
H
V
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
14
HHSearch
56.91
20%
-64
- C5 -
2POC
-
GFA1_CANAL
A:
[292-346]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
------
Q
V
T
A
R
--
D
G
--
R
P
I
-
V
I
C
N
E
G
-
D
A
----
I
I
SV
H
T
------
T
L
E
V
P
E
-----
T
----
V
-------
D
C
----
L
Q
G
L
L
N
V
I
-
P
L
-------
Q
L
I
S
Y
-
W
L
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
17
HHSearch
52.36
19%
-62
- C5 -
3ODP
-
?
A:
[302-364]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
K
------
E
V
Y
S
Q
--
N
G
N
H
K
V
L
-
A
I
S
E
Y
E
-
D
K
L
I
E
D
N
S
--
D
Y
------
F
I
A
I
N
K
E
E
Q
E
Y
E
----
D
-------
D
S
----
F
L
S
L
D
Y
L
L
-
N
A
-------
Q
M
Y
A
F
-
I
N
S
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
HHSearch
51.54
20%
-97
- C5 -
3KNZ
1
?
A:
[292-340]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
L
G
E
W
--
T
P
--
S
I
Y
-
R
I
G
P
Q
V
-
E
-----
N
N
--
G
L
------
N
L
N
F
P
F
-----
V
N---
D
-------
E
D
----
F
A
VFE
Y
I
I
-
P
L
-------
Q
M
L
C
A
-
I
L
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
19
HHSearch
49.73
20%
-42
- C5 -
1MOQ
2
GLMS_ECOLI
A:
[294-346]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
------
E
V
R
A
R
--
G
G
--
Q
L
Y
-
V
F
A
D
Q
D
-
A
G
F
V
S
S
D
N
--
M
H
------
I
I
E
M
P
H
-----
V
----
E
-------
E
V
----
I
A
P
I
F
Y
T
V
-
P
L
-------
Q
L
L
A
Y
-
H
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
PsiBlast_PDB
45.19
35%
35
- C5 -
4W4T
-
?
A:
[71-113]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
L
E
E
L
C
R
R
T
D
A
R
I
-
Y
C
-
L
V
R
------
S
K
T
E
Q
E
G
M
N
-
R
I
R
K
N
L
E
------
S
Y
S
L
W
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
39.21
35%
40
- C5 -
4U7W
1
?
A:
[71-112]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
L
E
E
L
C
R
R
T
D
A
R
I
-
Y
C
-
L
V
R
------
S
K
T
-
Q
E
G
M
N
-
R
I
R
K
N
L
E
------
S
Y
S
L
W
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
20
HHSearch
38.71
36%
2
- C3 -
3CWX
-
?
A:
[94-127]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
V
E
I
Q
I
N
P
E
V
K
DF
F
T
F
K
S
I
S
T
T
--
N
K
--
Q
R
C
-
F
L
S
L
R
G
-
E
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
15
HHSearch
36.66
17%
-5
- C5 -
3C3J
-
AGAS_ECOLI
A:
[296-363]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
A
------
E
L
R
R
D
NQ
A
M
--
R
V
I
-
A
I
A
A
E
S
-
S
D
IV--
A
A
--
G
P
------
H
I
I
L
P
P
-----
S
----
R
HFI
D
V
E
Q
A
F
----
C
F
----
L
M
-
Y
A
-------
Q
T
F
A
L
-
M
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------