@TOME V2.3
(Nov 2016)
Ref.
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : bsu01910: (2016-06-03 )
MKRNQKEWESVSKKGLMKPGGTSIVKAAGCMGCWASKSIAMTRVCALPHPAMRAI
Atome Classification :
(20 SA)
----------------------------------------------------------------------------------------.........10......--.--.20.-...---.---...-30----........40........50....-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
----------------------------------------------------------------------------------------MKR
N
Q
K
E
W
E
S
V
S
KKGLM--K--PG
G
T
-
S
I
V
---
K
---AAG-CM----GCWASK
S
I
A
M
T
R
VCALPH
P
A
MRAI-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
21
Fugue
84.95
18%
-72
- C6 -
4R33
5
?
A:
[35-418]
---------------------------------------------------------------------------------G
D
F
V
L
P
E
L
E
D
V
R
A
E
A
A
T
V
D
T
R
A
V
L
--
A
LA
E
G
E
E
-
P
A
E
S--
R
---
A
A
V
-
A
L
----
A
L
W
E
D
R
S
I
G
T
A
E
L
Q
A
A
A
E
A
R
C
G
A
R
RPR
L
H
T
F
V
P
L
YTTNYCDSECKMCSMRKGNHRLD
R
K
F
S
G
R
K
E
I
T
E
Q
L
E
I
L
Y
HHEGVR
G
V
G
F
L
T
G
E
Y
E
D
K
H
T
R
L
A
S
A
F
R
I
G
W
A
I
R
T
A
L
D
L
GFE
R
V
Y
F
N
IGSME
Q
D
E
I
D
V
L
G
E
W
I
GREDP
V
T
M
C
V
F
QESYD
R
E
T
Y
R
R
F
MGKTSVGVPKAD
F
D
R
R
V
V
S
F
D
R
W
L
D
A
GY
R
Y
V
N
P
G
V
LVGLHDD
L
S
A
E
L
V
S
L
V
A
H
G
D
H
L
R
S
R
G
A
T
A
D
L
S
VPRMRPAMKS
R
D
T
T
R
V
G
D
D
D
Y
L
R
L
M
S
V
V
A
F
T
C
PE
Q
R
L
V
L
T
TREP
Q
E
F
Q
D
V
A
LGLAG
V
I
S
P
G
S
PDVAPYRAGCEARNDEKSSQFLVADLRR
P
R
H
I
L
G
R
I
E
A
S
G
T
P
V
D
HFVNPAGEASR
27
Fugue
78.07
22%
-62
- C6 -
3B21
-
?
A:
[21-212]
-----------------------------------------------------------------------NVN
V
K
K
L
L
E
S
L
N
S
KSLG
D
M
D
K
D
S
E
L
A
A
T
L
Q
K
M
I
N
--
P
--
S
G
G
D
-
G
-----------
N
-
C
S
----
G
C
A
L
H
A
C
M
A
M
L
G
Y
G
V
R
E
A
P
V
P
N
E
I
SEYMTGFFHRH
L
E
Q
I
D
SE
G
I
V
S
H
PNET
Y
S
K
F
R
E
R
I
A
E
N
I
L
Q
N
T
SKG
S
V
V
M
I
S
I
EQAT
H
W
I
A
G
F
N
DGE
K
I
M
F
L
DVQTGKGFNLYDP
V
E
K
S
PDAFVDEN
S
S
V
Q
V
I
HVS
D
Q
E
F
D
H
Y
A
N
S
S
S
W
K
S
KRLC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
23
Fugue
77.91
20%
-63
- C6 -
4LEU
-
PP266_ARATH
A:
[71-252]
KLIG
K
E
A
L
F
V
I
L
G
L
K
R
L
KED
D
E
K
L
D
K
F
I
K
T
HVFRLL
K
L
D
M
L
A
V
I
G
E
L
E
R
Q
EE
T
A
L
A
I
K
M
F
E
V
I
Q
K
QEWYQPD
V
F
M
Y
K
D
L
I
V
S
L
A
K
S
KR
M
D
E
A
M
A
L
W
E
K
M
K
K
E
N
L
F
P
D
S
--
Q
T
Y
T
-
E
V
I
---
R
---
G
F
L
-
R
D
----
G
C
P
A
D
A
M
N
V
Y
E
D
M
L
K
S
P
D
P
P
E
E
L
P
F
R
V
L
L
K
G
L
L
PH
P
L
L
R
N
K
V
K
K
D
F
E
E
L
F
P
EKHAYDPPEE------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
30
Fugue
68.27
19%
-88
- C6 -
1XV3
-
PEN4D_LITSE
A:
[1-47]
-----------------------------------------------------------------------------------------------
H
S
S
G
Y
T
R
P
L
R
--
K
--
P
S
R
P
-
I
F
I
---
R
---
P
I
G
-
C
D
----
V
C
Y
-
G
I
P
S
S
T
A
R
L
C
C
F
R
Y
G
D
C
C
H
L
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
22
Fugue
62.92
9%
-47
- C6 -
2I7U
-
?
A:
[1-62]
---------------------------------------------------------------------------------MK
K
L
R
E
E
A
A
K
L
F
E
E
W
K
K
L
A
E
E
A
A
K
--
L
--
L
E
G
G
-
G
G
G
---
G
---
G
G
E
-
L
M
----
K
L
C
E
E
A
A
K
K
A
E
E
L
F
K
L
A
E
E
R
L
K
K
L
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
25
Fugue
62.42
20%
12
- C4 -
4AUI
6
?
A:
[20-327]
-----------------D
V
T
L
Y
G
T
I
K
A
G
V
E
T
S
R
S
V
A
H
HGAQA
D
R
V
K
T
A
T
E
I
A
DLG
S
K
I
G
F
K
G
Q
E
D
LGNG
L
K
A
I
W
Q
L
E
Q
K
A
Y
VSGTDTG
W
G
N
R
Q
S
F
I
G
L
K
G
G
F
G
K
V
--
R
--
V
G
R
L
N
N
I
L
---
K
---
D
T
G
-
N
F
----
N
P
W
E
G
K
S
Y
Y
S
-
G
L
S
N
I
A
Q
P
E
E
R
H
V
S
V
R
Y
D
S
P
E
FAG
F
S
G
S
V
Q
Y
VPNDNSGKNRS
E
S
Y
H
A
G
F
N
Y
K
N
DG
F
F
V
Q
Y
A
G
S
Y
K
RHNYTTEK
H
Q
V
H
R
L
V
G
G
Y
D
HDA
L
Y
A
S
V
A
V
Q
Q
Q
D
A
K
LTWRDDN
S
H
N
S
Q
T
E
V
A
T
T
V
A
Y
R
F
GN
V
T
P
R
V
S
Y
A
H
G
F
K
G
S
V
YDADHDN
T
Y
D
Q
V
V
V
G
A
E
Y
D
FSKR
T
S
A
L
V
S
A
G
W
L
Q
K
G
KGA
E
K
F
V
A
T
V
G
G
V
G
L
R
H
K
F-----------------------------------------------------------------------------------------------------------------------------------------
28
Fugue
53.81
11%
-44
- C2 -
2LU7
-
A:
[1-82]
--------------------------------------------------------------MT
R
V
R
S
T
PG
G
D
L
E
L
V
V
HLSGPGGP
V
R
W
Y
K
D
G
E
R
L
A
S
Q
G
R
V
Q
L
E
--
Q
--
A
G
A
R
-
Q
V
L
---
R
---
V
Q
G
-
A
R
SGDA
G
E
Y
L
C
D
A
P
Q
D
S
R
I
F
L
V
S
V
E
E
P
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
24
Fugue
48.89
14%
-25
* C6 *
4PKY
2
TACC3_MOUSE
B:
[2-50]
----------------------------------------------------------------------------------------------
E
F
E
V
L
A
L
Q
A
S
L
--
R
--
K
A
Q
M
-
Q
N
H
---
S
---
L
E
M
-
T
L
----
E
Q
K
T
K
E
I
D
E
L
T
R
I
C
D
D
L
I
S
K
M
E
K
I
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
17
HHSearch
46.76
38%
-6
- C9 -
2FO5
2
CYSP2_HORVU
A:
[14-35]
---------------------------------------------------------------------------------------------------------------
G
A
V
-
T
G
V
---
K
---
D
Q
G
K
C
G
----
S
C
W
A
F
S
T
V
V
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
HHSearch
45.74
25%
-63
- C8 -
2KQA
-
CEPL_CERFI
A:
[43-65]
--------------------------------------------------------------------------------------------------------------
V
G
G
I
-
P
D
I
AGW
D
---
S
P
S
-
C
G
----
T
C
W
K
V
T
I
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10
HHSearch
40.85
25%
-36
- C7 -
2EXV
1
CY551_PSEAE
A:
[2-21]
---------------------------------------------------------------------------------------------------------------
D
P
E
-
V
L
A
---
K
---
N
K
G
-
C
V
----
A
C
H
A
I
D
T
K
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
HHSearch
40.14
20%
-86
- C7 -
1CCH
1
A:
[2-21]
---------------------------------------------------------------------------------------------------------------
D
G
E
-
A
L
F
---
K
---
S
K
P
-
C
A
----
A
C
H
S
V
D
T
K
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
26
Fugue
39.57
18%
30
- C6 -
2A7U
-
ATPA_SHIF8
A:
[1-22]
----------------------------------------------------------------------------------------
M
Q
L
N
S
T
E
I
S
E
L
I
K
Q
R
I
A
--
Q
--
F
N
V
V
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
15
HHSearch
39.07
42%
-6
- C9 -
1YAL
-
A:
[12-32]
----------------------------------------------------------------------------------------------------------------
A
V
-
T
P
V
---
K
---
N
Q
G
A
C
G
----
S
-
W
A
F
S
T
I
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
HHSearch
38.72
25%
-22
- C8 -
3SUJ
3
?
A:
[46-68]
--------------------------------------------------------------------------------------------------------------
I
G
G
S
-
S
D
I
---
A
GYN
S
P
N
-
C
G
----
S
C
Y
Q
L
T
Y
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
HHSearch
38.37
21%
-23
- C8 -
3SUK
-
?
A:
[62-83]
--------------------------------------------------------------------------------------------------------------
I
G
A
S
-
S
D
I
---
G
GFN
S
P
A
-
C
G
----
N
C
Y
T
I
S
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
14
HHSearch
37.16
29%
-66
- C7 -
1JDL
1
CYC22_RHOCE
A:
[7-23]
---------------------------------------------------------------------------------------------------------------
K
G
E
-
A
V
F
---
K
-----
K
-
C
M
----
A
C
H
R
V
G
P
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
HHSearch
37.11
26%
-63
- C7 -
2ZXY
1
?
A:
[3-21]
----------------------------------------------------------------------------------------------------------------
G
K
-
A
I
F
---
Q
---
Q
K
G
-
C
G
----
S
C
H
Q
A
N
V
D
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
HHSearch
36.24
20%
-53
- C7 -
1CC5
1
CYC5_AZOVI
A:
[5-24]
--------------------------------------------------------------------------------------------------------------
R
S
G
D
-
D
V
V
---
A
---
K
-
Y
-
C
N
----
A
C
H
G
T
G
L
L
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
16
HHSearch
33.06
29%
-38
- C7 -
1GDV
1
A:
[5-21]
---------------------------------------------------------------------------------------------------------------
N
G
E
-
K
V
F
---
S
---
A
-
N
-
C
A
----
A
C
H
A
G
G
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------