@TOME V2.3
(Nov 2016)
Ref.
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : bsu01960: (2016-06-03 )
MPFLIMLLFVGAIGFQVSFVSRSTTWDMSIAGWVLTGVFILYTAFGLFSNRLPSQMADIIWLYGTATSFSKVVYSVLFFSVTWKALLWIISAIFGDVLIVLLSGDHINLLGRSIIFVGLFFIAEVWLMSVSCARTVKKMKRVYVLVFLLMLGIYSICLYRFFFLQHSSGIWESIARFISGVGLVFDTLSPLYVVVFIGIITVSFMTIAFTSRQVEMKESLVKEAEFWEEFQERQFGSGQIIQKPKTTWWGLQGLNGIWSFLWLELLLFKKYLFFHSIHTVMLSGVFYVVIFMYPEWFYLLFFLIVSAVMLSSYYSGIVRHSQSGTLHLFPGALWKKIIILELTNTVWLYILYCVSITFMAVGNLVYWYIYGLGIYIWFMTIRLFAFTHTNRNDIKLSLPQYYKSFFMALGLSGICLYVIHLLTADWYTLVVVVCIGSLSWCLFYRFR
Atome Classification :
(18 SA)
.........10........20........30........40........50........60.-.......70.......----.80........90........100.......110.......120.......130.-......140.......150.......160.......170.......180.......190...---.---...200-------.........210.......---220-...--......230.......240..-....--.250.......260.......270.......280.......290.......300.......310.......320.......330.......340.......350.......360.......370.......380.......390........400.......410.......420.......430.......440.....
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
MPFLIMLLFVGAIGFQVSFVSRSTTWDMSIAGWVLTGVFILYTAFGLFSNRLPSQMADIIWL-YGTATSFSKVVYSVLF----FSVTWKALLWIISAIFGDVLIVLLSGDHINLLGRSIIFVGLFFIAEVWLMSVSCA-RTVKKMKRVYVLVFLLMLGIYSICLYRFFFLQHSSGIWESIARFISGVGLVFDTLSPLYVVV---F---IGII---------TVSFMTIAFTSRQVEMKES---L---VKE--AEFWEEFQERQFGSGQIIQKP-KTTW--WGLQGLNGIWSFLWLELLLFKKYLFFHSIHTVMLSGVFYVVIFMYPEWFYLLFFLIVSAVMLSSYYSGIVRHSQSGTLHLFPGALWKKIIILELTNTVWLYILYCVSITFMAVGNLVYWYIYGLGIYIWFMTIRLFAFTHTN-RNDIKLSLPQYYKSFFMALGLSGICLYVIHLLTADWYTLVVVVCIGSLSWCLFYRFR
14
Fugue
90.98
19%
-171
- C2 -
5DJ4
1
SESN2_HUMAN
A:
[66-480]
------------------------------------------
G
L
E
A
L
M
S
S
G
R
V
D
N
L
A
V
V
M
G
L
H
P
D
Y
F
T
S
F
W
R
L
H
Y
L
L
L
H
TDGP
L
A
S
S
W
R
H
Y
I
A
I
M
A
A
A
R
H
Q
C
--
S
Y
L
V
G
S
H
M
A
E
F
L
Q
T
-------
G
G
D
P
E
W
L
L
G
L
H
R
A
P
E
K
L
R
K
L
S
E
I
N
K
L
L
A
H
R
P
W
L
I
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K
E
H
I
Q
A
L
L
--
K
T
G
E
H
T
W
-
S
L
A
E
L
I
Q
A
L
V
L
L
T
H
C
H
S
L
S
S
F
V
F
---
G
---
C
G
I
L
PEGDPPSEQ
S
S
P
R
D
V
E
A
L
M
E
R
M
Q
Q
L
Q
E
S
---
E
---
E
M
E
--
S
R
F
E
L
E
K
S
E
S
L
P
D
M
L
C
F
V
E
D
P
-
T
F
G
Y
ED
F
T
R
R
G
A
Q
A
P
P
T
F
R
------
A
Q
D
Y
T
W
E
D
--------
H
G
Y
S
L
I
Q
R
L
Y
P
E
G
G
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L
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K
F
Q
A
A
Y
S
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T
--
Y
N
T
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A
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H
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G
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D
T
-
S
V
L
R
R
A
I
W
N
Y
I
H
C
V
----
F
G
I
R
Y
D
D
Y
D
Y
G
E
V
N
Q
L
L
E
R
N
L
K
V
Y
I
K
T
V
A
C
Y
P
E
K
T
T
R
R
M
Y
N
L
F
W
R
H
F
R
H
S
E
K
V
----
H
V
N
L
L
L
L
E
A
R
M
Q
A
A
L
L
Y
A
L
R
A
I
T
R
Y
M
T
--------------------
12
Fugue
35.98
17%
362
- C2 -
1L4A
-
CPLX_DORPE
E:
[49-76]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
R
R
K
E
K
H
R
K
---
M
---
E
E
E
--
R
E
E
M
R
Q
T
I
R
D
K
Y
G
L
K
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
15
Fugue
35.42
23%
396
- C2 -
3WY9
-
RL12_PYRHO
C:
[7-32]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
K
K
E
E
E
E
K
E
E
---
E
---
V
S
E
--
E
E
A
L
A
G
L
S
A
L
F
G
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
17
Fugue
35.22
17%
108
- C2 -
3F5H
-
?
A:
[12-65]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
I
D
D
L
D
A
E
A
---
L
---
I
R
M
A
LG-------
P
R
N
T
M
T
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S
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A
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A
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---
L
---
K
E
N
--
E
E
L
R
K
E
S
R
R
R
A
D
R
R
Q
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
18
Fugue
34.65
15%
191
- C2 -
1A02
2
F:
[3-55]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
---
R
---
I
R
R
E
---------
R
N
K
M
A
A
A
K
S
R
N
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R
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E
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---
L
---
Q
A
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--
T
D
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D
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K
S
A
L
Q
T
E
I
A
N
L
L
K
E
-
K
E
K
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
HHSearch
32.99
17%
289
- C2 -
1Q2Z
-
A:
[72-103]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
L
Q
E
K
---
V
---
E
I
K
QL
N
H
F
W
E
I
V
V
Q
D
G
--
I
T
L
I
T
K
E
E
-
A
S
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
13
Fugue
32.45
12%
432
- C2 -
3LCN
-
GFD1_YEAST
C:
[4-28]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
A
S
K
M
K
L
L
K
K
K
---
I
---
E
E
Q
--
R
E
I
L
Q
K
T
H
H
K
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
20
Fugue
31.33
20%
443
* C2 *
1QGR
-
B:
[1-24]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
R
R
R
I
E
V
N
V
E
---
L
---
R
K
A
--
K
K
D
D
Q
M
L
K
R
R
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
HHSearch
29.42
35%
644
- C2 -
2L9I
-
PTMA_HUMAN
A:
[12-28]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
T
T
K
D
L
K
E
K
K
E
---
V
---
V
E
E
--
A
E
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
19
Fugue
29.19
26%
506
- C2 -
2YOM
-
?
A:
[120-142]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
R
Q
V
E
L
E
R
E
---
L
---
A
E
L
--
R
A
R
P
K
P
D
E
R
A
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
Fugue
28.28
13%
206
- C2 -
2KHK
-
ATPF_ECOLI
A:
[1-53]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
A
A
I
E
K
R
Q
K
E
I
A
D
G
---
L
---
A
S
A
--
E
R
A
H
K
D
L
D
L
A
K
A
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A
T
D
Q
L
K
K
A
-
K
A
E
A
--
Q
V
I
I
E
Q
A
N
K
R
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
HHSearch
27.84
17%
489
- C2 -
3Q8T
-
BECN1_RAT
A:
[221-244]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
---
Q
E
E
--
A
Q
Y
Q
R
E
Y
S
E
F
K
R
Q
Q
L
E
L
D
D
E
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
HHSearch
27.00
25%
141
- C2 -
2K21
-
KCNE1_HUMAN
A:
[40-98]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
K
L
E
A
L
Y
V
L
M
V
L
G
F
---
F
G
F
F
---------
T
L
G
I
M
L
S
Y
I
R
S
K
K
L
E
H
S
N
D
---
P
F
N
V
Y
I
E
--
S
D
A
W
Q
E
K
D
K
A
Y
V
Q
A
R
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
16
Fugue
26.35
11%
124
- C2 -
2E62
-
?
A:
[1-61]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
S
---------
S
G
S
S
G
N
G
M
D
E
E
Q
R
Q
K
R
R
R
I
---
E
---
V
A
L
--
I
E
Y
R
E
T
L
E
E
Q
G
M
K
N
P
E
E
I
E
R
K
-
V
E
I
N
--
R
K
R
L
E
V
D
Y
G
L
S
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
HHSearch
26.21
21%
191
- C2 -
2M0Q
-
KCNE2_HUMAN
A:
[51-103]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
Y
L
M
V
---
M
I
G
M
F
S
F
I
---------
I
V
A
I
L
V
S
T
V
K
S
K
R
R
E
H
S
N
D
P
Y
H
Q
---
Y
I
V
--
E
D
-
W
Q
E
K
Y
K
S
Q
I
L
N
L
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
HHSearch
24.70
14%
246
- C2 -
4PH2
2
?
A:
[65-100]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
D
Q
T
A
H
M
T
S
L
T
A
A
I
A
A
A
E
A
A
N
T
L
--
Q
G
F
N
P
Q
N
G
T
L
T
Q
Q
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10
HHSearch
15.16
40%
565
- C2 -
3WU2
-
PSBL_THEVL
L:
[21-35]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
L
L
I
L
V
L
A
L
L
F
S
S
Y
F
--------------------------------------------------------------------------------------------------------------------------------------
6
HHSearch
13.35
19%
1403
- C1 -
3HZQ
-
MSCL_STAAW
A:
[1-11]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
L
K
E
F
K
E
F
A
L
K
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------