@TOME V2.3
(Nov 2016)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : bsu02330: (2016-06-03 )
MEKQYRVLLYYKYVPIEDPEAFREQHLAFCKELGLLGRILVSSEGINGTVSGTVEQTEKYMETMKADPRFADMVFKIDEAEGHAFKKIFVRHKKELVTLRLEDDVDPNETTGQHLKPAEFYEKMQDPNTIVIDARNDYEYDLGHFRGAVRPDIEAFRELPEWIEEHKDMLEGKKILTYCTGGVRCEKFSGWLVKQGFEDVAQLDGGIVTYGKDPEVQGKLWDGQCYVFDERISVPVNRVEHVIVGKDYFTGEPCERYVNCANPSCNKKMICTPENEYKYMRSCSHECRTNPRNLYVKEHNMTEEEVNARLAAIETEDHAAAE
Atome Classification :
(20 SA)
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------.........10........20........30........40........50........60........70........80....-....90.-.......100---------.........110.......120...--....130....-..----------.140........----150.....----.----.160--......-.---..170-------.---........180...--....190...-....200.....---..210.......220.......230.......240.......250.......260.......270.......280.......290-.......300.......310.......320
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ME
K
Q
Y
R
V
L
L
Y
Y
K
YVPIE
D
P
E
A
F
R
E
Q
H
L
A
F
C
K
E
L
G
L
L
G
R
I
L
VSSEGINGTVS
G
T
V
E
Q
T
E
K
Y
M
E
T
MKADPR
F
A
D
M
V
F
K
I
DEAE
G
H
A
F
-
K
K
I
F
V
R
H
-
K
K
E
L
V
T
L
R
-----------LEDDVDPNETTGQHL
K
P
A
E
F
Y
E
K
MQ--DP
N
T
I
V
I
DARN-DY----------EY
D
-
L
G
HFRGAV----RP
D
I
E
A
F
R
----
E
----
L
P
----
E
W
I
E
E
H
-
K
---
D
M
L---------E---G
K
K
I
L
T
YCTGG
V
R
C
--
E
K
FS
G
W
L
V
K
Q
-
G
F
E
D
V
A
Q
LDG
G
I
---
V
TYGKDPEV
Q
G
K
LWD
G
Q
C
Y
V
F
DERISV
P
V
N
R
V
E
H
V
I
VGKDYFTG
E
P
C
E
R
Y
V
NCANPSCNK
K
M
I
CTPE
N
E
Y
K
Y
M
R
SC
S
H
E
CRTNPR-
N
L
Y
V
KEHNM
T
E
E
E
V
N
A
R
L
A
A
I
ETEDHAAAE
1
PsiBlast_PDB
84.74
40%
-105
- C- -
4F67
-
Y2838_LEGPH
A:
[9-232]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
F
Y
K
F
I
P
L
N
D
F
R
S
L
R
E
P
I
L
T
K
M
H
E
I
G
I
K
G
T
I
I
L
A
H
E
G
V
N
G
G
F
A
G
N
R
E
Q
M
N
V
F
Y
D
Y
L
R
S
D
S
R
F
A
D
L
H
F
K
E
T
Y
D
N
K
N
P
F
-
D
K
A
K
V
K
L
-
R
K
E
I
V
T
M
G
-----------
V
Q
K
-
V
D
P
S
Y
N
A
G
T
Y
L
S
P
E
E
W
H
Q
F
I
Q
--
D
P
N
V
I
L
L
D
T
R
N
-
D
Y
----------
E
Y
E
-
L
G
T
F
K
N
A
I
----
N
P
D
I
E
N
F
R
----
E
----
F
P
----
D
Y
V
Q
R
N
-
L
---
I
D
K
---------
K
---
D
K
K
I
A
M
F
C
T
G
G
I
R
C
--
E
K
T
T
A
Y
M
K
E
L
-
G
F
E
H
V
Y
Q
L
H
D
G
I
---
L
N
Y
L
E
S
I
P
E
S
E
S
L
W
E
G
K
C
F
V
F
D
D
R
V
A
V
-----------------------------------------------------------------------------------------
29
HHSearch
55.34
23%
-142
- C1 -
3GK5
-
?
A:
[102-193]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
S
I
N
A
A
D
L
Y
E
N
I
----
K
A
Y
T
V
L
D
V
R
E
-
P
F
----------
E
L
I
-
F
G
S
I
A
N
S
I
----
N
I
P
I
S
E
L
R
----
E
----
K
W
----
K
I
----------
L
E
---------
R
---
D
K
K
Y
A
V
I
C
A
H
G
N
R
S
--
A
A
A
V
E
F
L
S
Q
L
-
G
L
N
-
I
V
D
V
E
G
G
I
---
Q
S
W
I
E
E
--------------------------------------------------------------------------------------------------------------
6
PsiBlast_PDB
54.42
26%
-153
- C1 -
3HIX
1
?
A:
[13-90]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
F
T
I
L
D
V
R
D
-
R
S
----------
T
Y
N
-
D
G
H
I
M
G
A
M
----
A
M
P
I
E
------------------
D
L
V
D
R
A
-
S
---
S
S
L
---------
E
K--
S
R
D
I
Y
V
Y
G
A
G
D
E
Q
T
--
S
Q
A
V
N
L
L
R
S
A
-
G
F
E
H
V
S
E
L
K
G
G
L
---
A
A
W
-----------------------------------------------------------------------------------------------------------------
24
HHSearch
52.78
19%
-127
- C1 -
3FOJ
1
?
A:
[2-96]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
S
I
T
V
T
E
L
K
E
K
I
L
D-
A
N
P
V
N
I
V
D
V
R
T
-
D
Q
----------
E
T
A
-
M
G
I
I
P
G
A
E
----
T
I
P
M
N
S
I
P
----
D
----
N
L
----
N
Y
----------
F
N
---------
D
---
N
E
T
Y
Y
I
I
C
K
A
G
G
R
S
--
A
Q
V
V
Q
Y
L
E
Q
N
-
G
V
N
-
A
V
N
V
E
G
G
M
---
D
E
F
G
D
E
--------------------------------------------------------------------------------------------------------------
5
PsiBlast_PDB
52.76
26%
-157
- C1 -
3K9R
-
?
A:
[33-112]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
P
A
F
T
I
L
D
V
R
D
-
R
S
----------
T
Y
N
-
D
G
H
I
M
G
A
M
----
A
M
P
I
E
D
L
------------------
V
D
R
A
-
S
---
S
S
L
---------
E
K--
S
R
D
I
Y
V
Y
G
A
G
D
E
Q
T
--
S
Q
A
V
N
L
L
R
S
A
-
G
F
E
H
V
S
E
L
K
G
G
L
---
A
A
W
-----------------------------------------------------------------------------------------------------------------
20
PsiBlast_CBE
52.52
31%
-155
- C1 -
4OCG
1
?
B:
[486-561]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
Q
L
L
L
D
V
R
N
-
P
G
----------
E
L
Q
-
N
G
G
L
E
G
A
V
----
N
I
P
V
D
E
L
R
DRMH
E
----
L
P
-----------
K
---
D
----------------
K
E
I
I
I
F
C
Q
V
G
L
R
G
--
N
V
A
Y
R
Q
L
V
N
N
-
G
Y
R
-
A
R
N
L
I
G
G
Y
---
R
T
Y
-----------------------------------------------------------------------------------------------------------------
28
HHSearch
52.45
20%
-114
- C1 -
2HHG
2
?
A:
[18-127]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
S
S
I
E
T
L
T
T
A
D
A
I
A
L
H
K
S
G
A
S
D
V
V
I
V
D
I
R
D
-
P
R
----------
E
I
E
R
D
G
K
I
P
G
S
F
----
S
C
T
R
G
M
L
E
----
F
----
W
I
----
D
P
Q
S
P
Y
A
K
P--
I
F
Q
---------
E
---
D
K
K
F
V
F
Y
C
A
G
G
L
R
S
--
A
L
A
A
K
T
A
Q
D
M
-
G
L
K
P
V
A
H
I
E
G
G
F
---
G
A
W
R
D
A
--------------------------------------------------------------------------------------------------------------
12
PsiBlast_PDB
52.11
31%
-153
- C1 -
4OCG
1
?
A:
[486-561]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
Q
L
L
L
D
V
R
N
-
P
G
----------
E
L
Q
-
N
G
G
L
E
G
A
V
----
N
I
P
V
D
E
L
R
DRMH
E
----
L
P
-----------
K
---
D
----------------
K
E
I
I
I
F
C
Q
V
G
L
R
G
--
N
V
A
Y
R
Q
L
V
N
N
-
G
Y
R
-
A
R
N
L
I
G
G
Y
---
R
T
Y
-----------------------------------------------------------------------------------------------------------------
40
HHSearch
51.78
23%
-138
- C1 -
3HIX
1
?
A:
[13-93]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
F
T
I
L
D
V
R
D
-
R
S
----------
T
Y
N
-
D
G
H
I
M
G
A
M
----
A
M
P
I
E
D
L
V
----
D
----
R
A
----
S
S
S
---------
L
E
---------
K
---
S
R
D
I
Y
V
Y
G
A
G
D
E
Q
T
--
S
Q
A
V
N
L
L
R
S
A
-
G
F
E
H
V
S
E
L
K
G
G
L
---
A
A
W
K
A
I
--------------------------------------------------------------------------------------------------------------
39
HHSearch
51.43
20%
-138
* C1 *
3TP9
-
?
A:
[373-468]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Y
A
N
V
S
P
D
E
V
R
G
A
L
A
--
Q
Q
G
L
W
L
L
D
V
R
N
-
V
D
----------
E
W
A
-
G
G
H
L
P
Q
A
H
----
H
I
P
L
S
K
L
A
----
A
----
H
I
----
H
D
----------
V
P
---------
R
---
D
G
S
V
C
V
Y
C
R
T
G
G
R
S
--
A
I
A
A
S
L
L
R
A
H
-
G
V
G
D
V
R
N
M
V
G
G
Y
---
E
A
W
R
G
K
--------------------------------------------------------------------------------------------------------------
30
HHSearch
51.16
20%
-127
- C1 -
3IWH
1
?
A:
[2-96]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
S
I
T
T
D
E
L
K
N
K
L
L
E-
S
K
P
V
Q
I
V
D
V
R
T
-
D
E
----------
E
T
A
-
M
G
Y
I
P
N
A
K
----
L
I
P
M
D
T
I
P
----
D
----
N
L
----
N
S
----------
F
N
---------
K
---
N
E
I
Y
Y
I
V
C
A
G
G
V
R
S
--
A
K
V
V
E
Y
L
E
A
N
-
G
I
D
-
A
V
N
V
E
G
G
M
---
H
A
W
G
D
E
--------------------------------------------------------------------------------------------------------------
48
Fugue
50.48
12%
-74
- C1 -
1YT8
2
?
A:
[6-530]
I
A
V
R
T
F
H
D
I
R
A
A
L
L
A
R
R
E
L
A
L
L
DVRE
E
D
P
F
A
Q
AHPLF
A
A
N
L
P
LSRLELEIHARVPRRDTP
I
T
V
Y
D
DGEG
L
A
P
V
A
A
Q
R
L
H
D
L
GYS
D
V
A
L
LDGG
L
S
G
W
R
N
A
G
G
E
L
F
R
D
VN
V
P
S
K
A
F
G
E
L
V
E
A
E
RHT
P
S
L
A
A
E
E
V
Q
A
L
L
D
A
RAE
A
V
I
L
D
ARR
F
D
E
Y
Q
T
MSIPG
G
I
S
V
P
GAELVLRVAELAPDPR
T
R
V
I
V
N
C
AGR
T
R
S
I
I
G
T
Q
S
L
L
N
A
GIPNP
V
A
A
LRNG
T
I
G
W
T
L
A
G
Q
Q
L
E
H
G
Q
T
R
R
F
G
AIS
Q
D
T
R
K
A
A
A
Q
R
A
R
A
V
A
D
R
A
G
V
E
R
L
D
L
A
G
L
A
Q
W
Q
D
E
H
D
R
T
T
Y
L
L
D
V
R
T
P
E
E
Y
E
A
G
H
L
P
G
S
R
S
T
P
G
G
Q
L
V
Q
E
T
D
H
V
A
S
V
R
G
--
A
R
L
V
L
V
D
D
D
G
V
R
A
N
M
S
A
S
W
L
A
Q
M
G
W
Q
V
A
V
L
D
GLSEADFSERG
A
W
S
A
P
L
P
R
Q
P
R
A
D
T
I
D
P
T
T
L
A
D
W
L
G
--
E
P
G
T
R
V
L
D
F
T
A
-
S
A
----------
N
Y
A
-
K
R
H
I
P
G
A
A
----
W
V
L
R
S
Q
L
K
----
Q
----
A
L
----
E
R
L
G
T
----------------------
A
E
R
Y
V
L
T
C
G
S
S
L
L
A
--
R
F
A
V
A
E
V
Q
A
L
-
S
G
K
P
V
F
L
L
D
G
G
T
---
S
A
W
V
A
A
G
-----------------------------------------------
L
P
T
E
D
G
E
S
L
L
A
S
P
R
I
D
R
Y
R
R
P
Y
E
G
T
D
N
P
R
E
A
M
Q
G
Y
L
D
W
E
F
G
L
V
E
Q
L
G
R
D
----
G
T
H
G
F
F
V
I
E
14
PsiBlast_PDB
49.80
31%
-147
- C1 -
3NTA
2
?
A:
[486-561]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
Q
L
L
L
D
V
R
N
-
P
G
----------
E
L
Q
-
N
G
G
L
E
G
A
V
----
N
I
P
V
D
E
L
R
DRMH
E
----
L
P
-----------
K
---
D
----------------
K
E
I
I
I
F
C
Q
V
G
L
R
G
--
N
V
A
Y
R
Q
L
V
N
N
-
G
Y
R
-
A
R
N
L
I
G
G
Y
---
R
T
Y
-----------------------------------------------------------------------------------------------------------------
3
PsiBlast_PDB
49.47
26%
-141
- C1 -
2KL3
-
?
A:
[18-97]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
P
A
F
T
I
L
D
V
R
D
-
R
S
----------
T
Y
N
-
D
G
H
I
M
G
A
M
----
A
M
P
I
E
------------------
D
L
V
D
R
A
-
S
---
S
S
L
---------
E
K--
S
R
D
I
Y
V
Y
G
A
G
D
E
Q
T
--
S
Q
A
V
N
L
L
R
S
A
-
G
F
E
H
V
S
E
L
K
G
G
L
---
A
A
W
-----------------------------------------------------------------------------------------------------------------
8
PsiBlast_PDB
49.45
20%
-140
- C1 -
1GN0
1
GLPE_ECOLI
A:
[7-93]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
N
V
A
D
A
H
Q
K
L
Q
--
E
K
E
A
V
L
V
D
I
R
D
-
P
Q
----------
S
F
A
-
M
G
H
-----------
A
V
Q
A
F
H
----
L
----
T
N
----
D
T
L
G
A
F
M
R
---
D
N
D
---------
F
---
D
T
P
V
M
V
M
C
Y
H
G
N
S
S
--
K
G
A
A
Q
Y
L
L
Q
Q
-
G
Y
D
V
V
Y
S
I
D
G
G
F
-----------------------------------------------------------------------------------------------------------------------
7
PsiBlast_PDB
49.25
26%
-114
- C1 -
1URH
-
THTM_ECOLI
A:
[11-130]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
A
E
H
I
D
--
D
P
E
I
Q
I
I
D
A
R
M
-
A
S
P
GQEDRN
V
A
Q
E
Y
L
-
N
G
H
I
P
G
A
V
----
F
F
D
I
E
A
L
S
----
D
HTSP
L
P
----
H
M
L
P
R
P
-
E
---
T
F
A
V
A
M
R
E
L
GVN
Q
---
D
K
H
L
I
V
Y
D
E
G
N
L
F
S
--
A
P
R
A
W
W
M
L
R
T
F
G
V
E
K
V
S
I
L
G
G
G
L
---
A
G
W
Q
R
D
--------------------------------------------------------------------------------------------------------------
10
PsiBlast_PDB
48.90
23%
-88
- C1 -
3D1P
1
RDL1_YEAST
A:
[37-135]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
H
--
D
P
N
V
V
L
V
D
V
R
E
-
P
S
----------
E
Y
S
-
I
V
H
I
P
A
S
I
NVPY
R
S
H
P
D
A
F
A
----
L
----
D
P
----
L
E
F
E
K
Q
-
I
---
G
I
P
---------
K
PDS
A
K
E
L
I
F
Y
C
A
S
G
K
R
G
--
G
E
A
Q
K
V
A
S
S
H
-
G
Y
S
N
T
S
L
Y
P
G
S
M
N
D
W
V
S
H
G
G
D
--------------------------------------------------------------------------------------------------------------
33
HHSearch
48.81
22%
-136
- C1 -
2K0Z
-
?
A:
[5-96]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Y
A
I
S
L
E
E
V
N
------
F
N
D
F
I
V
V
D
V
R
E
-
L
D
----------
E
Y
E
-
E
L
H
L
P
N
A
T
----
L
I
S
V
N
D
Q
E
----
K
----
L
A
----
D
F
L
S
--------
Q
H
---------
K
---
D
K
K
V
L
L
H
C
R
A
G
R
R
A
--
L
D
A
A
K
S
M
H
E
L
-
G
Y
T
-
P
Y
Y
L
E
G
N
V
---
Y
D
F
E
K
Y
--------------------------------------------------------------------------------------------------------------
41
HHSearch
48.41
18%
-141
- C1 -
3FLH
1
?
A:
[13-113]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
S
L
Y
I
D
H
H
T
V
L
A
D
M
Q
N
A
T
G
K
Y
V
V
L
D
V
R
N
A
P
A
----------
Q
V
K
-
K
D
Q
I
K
G
A
I
----
A
M
P
A
K
D
L
A
----
T
----
R
I
----
G
E
----------
L
D
---------
P
---
A
K
T
Y
V
V
Y
D
W
T
G
G
T
T
L
G
K
T
A
L
L
V
L
L
S
A
-
G
F
E
-
A
Y
E
L
A
G
A
L
---
E
G
W
K
G
M
--------------------------------------------------------------------------------------------------------------
37
HHSearch
47.52
17%
-95
- C1 -
3D1P
2
RDL1_YEAST
A:
[21-132]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
I
Q
S
Y
S
F
E
D
M
K
R
I
V
G
K
H
D
P
N
V
V
L
V
D
V
R
E
-
P
S
----------
E
Y
S
-
I
V
H
I
P
A
S
I
----
N
V
P
Y
R
S
H
P
----
D
----
A
F
ALD
P
L
E
F
E
K
Q
-
I
GIP
K
P
D
---------
S
---
A
K
E
L
I
F
Y
C
A
S
G
K
R
G
--
G
E
A
Q
K
V
A
S
S
H
-
G
Y
S
N
T
S
L
Y
P
G
S
M
---
N
D
W
V
S
H
--------------------------------------------------------------------------------------------------------------