@TOME V2.3
(Nov 2016)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : bsu02600: (2016-06-04 )
MAVVRATSADVDLMARLLRAEAEGEGKQGMLLVGNVGINRLRANCSDFKGLRTIRQMIYQPHAFEAVTHGYFYQRARDSERALARRSINGERRWPAKFSLWYFRPQGDCPAQWYNQPFVARFKSHCFYQPTAETCENVYNTF
Atome Classification :
(20 SA)
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------.........10........20........30........40.......-.50........60.....------------...70........80....--....-90...-.....100.....---------.-----.110.......------120-.--......130.......140----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------M
A
V
V
RATSA
D
V
D
L
M
A
R
L
L
R
A
EAEGEGKQ
G
M
L
L
V
GNVG
I
N
R
L
RAN
C
S
D
F
-
K
G
L
R
T
I
R
Q
M
IYQPH
A
F
E
A
------------
V
T
H
G
Y
F
Y
Q
R
AR
D
S
E
R
A
L
A
R
--RSIN-GERRW-PAK
F
S
L
W
Y
F
RPQG---------D-----C
P
A
Q
WYNQ
P
F
V
------
A
R
F
-
K
--SH
C
F
YQP
T
A
E
T
C
E
N
V
Y
NTF----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
23
Fugue
72.76
26%
-103
- C2 -
4F55
3
A:
[1-128]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGGRT
N
V
P
N
G
Y
S
Q
N
D
I
Q
L
M
A
N
A
V
Y
G
E
S
R
G
E
P
Y
L
G
Q
V
A
V
A
A
V
I
L
N
R
V
T
----
S
A
-
S
F
P
N
T
V
S
G
V
I
F
E
P
R
A
F
T
A
------------
V
A
D
G
Q
I
Y
L
T
P
N
E
T
A
K
K
A
V
L
--
D
A
I
N
-
G
W
D
---
P
T
G
N
A
L
Y
Y
F
N
P
D
T
---------
A
-----
T
S
K
W
I
W
T
R
P
Q
I
------
K
K
I
-
G
--
K
H
I
F
C
K
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
13
HHSearch
72.65
27%
-116
- C2 -
4F55
3
A:
[8-128]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
P
N
G
Y
S
Q
N
D
I
Q
L
M
A
N
A
V
Y
G
E
S
R
G
E
P
Y
L
G
Q
V
A
V
A
A
V
I
L
N
R
V
T
S
A
S
--
F
---
P
N
T
V
S
G
V
I
F
E
P
R
A
F
T
A
------------
V
A
D
G
Q
I
Y
L
T
P
N
E
T
A
K
K
A
V
L
--
D
A
I
N
-
G
--
W
D
-
P
T
G
N
A
L
Y
Y
F
N
P
D
T
---------
A
-----
T
S
K
W
I
W
T
R
P
Q
I
------
K
K
I
-
G
--
K
H
I
F
C
K
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
14
HHSearch
71.72
26%
-110
- C2 -
4FET
1
?
B:
[102-222]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
P
N
G
Y
S
Q
N
D
I
Q
M
M
A
N
A
V
Y
G
E
S
R
G
E
P
Y
L
G
Q
V
A
V
A
A
V
I
L
N
R
V
T
S
A
S
--
F
---
P
N
T
V
S
G
V
I
F
E
P
R
A
F
T
A
------------
V
A
D
G
Q
I
Y
L
T
P
N
E
T
A
K
K
A
V
L
--
D
A
I
N
-
G
--
W
D
-
P
T
G
N
A
L
Y
Y
F
N
P
D
T
---------
A
-----
T
S
K
W
I
W
T
R
P
Q
I
------
K
K
I
-
G
--
K
H
I
F
C
K
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
70.28
28%
-116
- C2 -
4F55
3
A:
[15-126]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
I
Q
L
M
A
N
A
V
Y
G
E
S
R
G
E
P
Y
L
G
Q
V
A
V
A
A
V
I
L
N
R
V
T
S
--
A
S
F
-
P
--
N
T
V
S
G
V
I
F
E
P
R
A
F
T
A
------------
V
A
D
G
Q
I
Y
L
T
P
N
E
T
A
K
K
A
V
L
--
D
A
I
N
-
G
---
W
D
P
T
G
N
A
L
Y
Y
F
N
P
D
T
---------
A
-----
T
S
K
W
I
W
T
R
P
Q
I
------
K
K
I
-
G
--
K
H
I
F
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
68.04
26%
-105
- C2 -
4FET
1
?
B:
[109-220]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
I
Q
M
M
A
N
A
V
Y
G
E
S
R
G
E
P
Y
L
G
Q
V
A
V
A
A
V
I
L
N
R
V
T
S
--
A
S
F
-
P
--
N
T
V
S
G
V
I
F
E
P
R
A
F
T
A
------------
V
A
D
G
Q
I
Y
L
T
P
N
E
T
A
K
K
A
V
L
--
D
A
I
N
-
G
---
W
D
P
T
G
N
A
L
Y
Y
F
N
P
D
T
---------
A
-----
T
S
K
W
I
W
T
R
P
Q
I
------
K
K
I
-
G
--
K
H
I
F
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
PsiBlast_PDB
53.74
35%
-206
- C2 -
3OPT
2
RPH1_YEAST
A:
[228-271]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
W
-
K
A
S
F
S
-
W
H
L
E
D
Q
D
L
Y
S
I
N
Y
I
HF
G
-----
A
P
K
Q
W
Y
S
I
P
Q
E
------
D
R
F
-
K
--
F
Y
K
F
M
Q
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
PsiBlast_PDB
52.45
27%
-123
- C2 -
2IS6
2
UVRD_ECOLI
A:
[116-184]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
E
D
Q
L
R
L
L
K
R
L
I
K
A
M
N
L
D
E
K
Q
W
-
P
P
R
Q
A
M
W
Y
I
N
S
Q
K
---------
D
E
GLRP
H
H
I
Q
S
Y
G
N
P
V
E
------
Q
T
W
-
Q
--
K
--
V
Y
Q
A
Y
Q
E
A
C
D
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
PsiBlast_PDB
49.07
27%
-111
- C2 -
2IS1
1
UVRD_ECOLI
A:
[116-185]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
E
D
Q
L
R
L
L
K
R
L
I
K
A
M
N
L
D
E
K
Q
W
-
P
P
R
Q
A
M
W
Y
I
N
S
Q
K
---------
D
E
GLRP
H
H
I
Q
S
Y
G
N
P
V
E
------
Q
T
W
-
Q
--
K
--
V
Y
Q
A
Y
Q
E
A
C
D
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
PsiBlast_PDB
48.33
27%
-109
- C2 -
2IS4
1
UVRD_ECOLI
A:
[116-195]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
E
D
Q
L
R
L
L
K
R
L
I
K
A
M
N
L
D
E
K
Q
W
-
P
P
R
Q
A
M
W
Y
I
N
S
Q
K
---------
D
E
GLRP
H
H
I
Q
---
N
P
V
E
------
Q
T
W
-
Q
--
K
--
V
Y
Q
A
Y
Q
E
A
C
D
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
31
Fugue
47.41
20%
-82
- C1 -
4KC5
1
?
A:
[8-921]
NELANYIAVI
G
L
G
G
Y
Y
P
GADS
I
D
E
L
W
Q
N
L
A
N
GVDCMSDFPADRWDHSKIYYKNRKVLGKTTCI
N
G
S
F
I
K
DVDKFDYSYFKMP
K
V
Y
A
D
H
MS
P
E
V
R
L
F
L
Q
V
A
V
H
T
F
E
D
A
GYS
K
E
T
L
L
S
R
YNGD
V
G
V
L
L
G
T
MSND
Y
H
Y
Y
G
F
E
S
N
V
F
RG
S
M
A
S
G
S
G
M
A
T
I
P
M
T
V
S
Y
F
Y
GLT
G
P
S
L
F
I
D
TMCS
S
S
S
T
C
I
H
T
A
C
Q
M
L
K
H
DETK
M
V
L
A
G
G
L
N
L
M
YH
P
Y
T
T
V
N
T
S
Q
G
NFTSITSESVNSYGVGAD
G
T
V
I
G
E
G
I
G
A
V
L
L
K
R
L
D
R
A
I
A
D
RDQIYGVIK
G
S
A
M
T
N
AGERNGFNVPN
P
D
L
Q
T
L
A
I
R
Q
A
M
D
Q
A
KVHPSSISYIEGHGSGT
K
L
G
D
P
I
E
V
L
G
L
N
N
A
F
RWATDDKQF
C
Y
L
G
S
IKSNIGHLLAA
S
G
I
A
G
L
T
K
T
L
L
Q
F
K
H
K
Q
I
A
P
SIHSSQLNQDIDFADTP
F
V
V
P
QQLIEWRQPERIING
R
K
Q
V
F
P
R
R
A
G
L
T
S
I
A
AG
G
M
N
A
H
M
I
V
E
E
Y
P
E
P
ADSA
G
Q
I
S
EDQ
L
V
F
V
F
S
V
HKLAL
L
A
Q
N
L
T
S
F
R
D
W
L
A
S
S
E
A
P
L
A
Q
I
A
Y
T
L
Q
V
-----
G
K
N
N
L
-------
R
N
R
L
A
I
R
C
R
T
R
-
Q
A
L
S
R
A
L
N
A
C
I
D
G
H
-
Y
Q
S
------------
S
A
D
S
K
I
F
Y
R
F
Q
E
S
D
A
V
Q
P
L
--
E
S
-
D
-
L
N
D
P
L
-
A
P
L
L
T
Q
W
L
N
G
D
S
Q
---------
V
-----
D
W
A
S
L
Y
A
Q
P
P
V
R
I
S
L
P
A
Y
R
F
E
K
--
T
R
C
W
Y
T
E
E
G
Y
E
S
S
I
V
N
P
L
M
F
K
N
KLHPLVAKNCSTPQ
P
G
A
I
F
R
T
D
FVEDELLD
Y
V
Y
S
G
RG
G
R
R
L
S
A
F
N
F
A
D
V
A
L
A
MPALASRFDG
R
T
L
S
V
S
C
A
F
EHYIADWTTVT
G
L
E
Y
R
L
F
E
IDSE
Q
L
E
L
E
F
D
F
R
R
SGE
Q
P
T
H
L
G
F
A
V
I
N
P
L
T
SDEPPLP
Q
Q
W
L
D
D
A
R
E
L
L
N
R
Q
A
L
QA
G
R
Q
L
S
A
A
E
V
S
Q
R
L
A
Q
A
GYDFAPYLDH
D
G
E
L
T
I
G
RS
G
L
V
L
K
G
R
P
P
VNRHNHYADNVQLS
P
Y
L
A
T
T
I
D
K
A
L
Y
L
L
L
D
E
L
GLPQ
G
R
V
I
V
R
N
I
E
RLCCYHTPA
G
G
F
S
V
V
L
SG
I
G
L
N
DN
E
L
S
L
S
L
L
V
L
D
EREQICVKLD
K
V
S
L
Y
L
G
K
Q
E
V
A
S
VDRKHSLLT
9
PsiBlast_PDB
47.25
35%
-161
- C2 -
3OPW
-
RPH1_YEAST
A:
[228-271]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
W
-
K
A
S
F
S
-
W
H
L
E
D
Q
D
L
Y
S
I
N
Y
I
HF
G
-----
A
P
K
Q
W
Y
S
I
P
Q
E
------
D
R
F
-
K
--
F
Y
K
F
M
Q
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
PsiBlast_PDB
45.92
27%
-86
- C2 -
2IS2
-
UVRD_ECOLI
A:
[116-185]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
E
D
Q
L
R
L
L
K
R
L
I
K
A
M
N
L
D
E
K
Q
W
-
P
P
R
Q
A
M
W
Y
I
N
S
Q
K
---------
D
E
GLRP
H
H
I
Q
S
Y
G
N
P
V
E
------
Q
T
W
-
Q
--
K
--
V
Y
Q
A
Y
Q
E
A
C
D
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
16
HHSearch
45.16
28%
-180
* C2 *
2R1F
3
YCEG_ECOLI
A:
[134-169]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
K
N
Q
L
V
T
M
A
S
I
I
E
K
E
T
A
V
--
A
S
E
R
D
Q
V
A
S
V
F
I
N
R
L
R
I
G
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
PsiBlast_PDB
43.70
39%
-186
- C- -
4Q2S
-
YE38_SCHPO
A:
[953-985]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
-----
C
V
A
E
W
C
N
M
P
S
V
------
A
G
F
-
D
V
L
S
E
I
S
Y
D
R
M
L
E
N
C
S
N
L
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
29
Fugue
43.68
17%
-93
- C2 -
2KPO
-
?
A:
[1-110]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
L
L
Y
V
L
I
I
S
N
D
K
K
L
I
E
E
A
R
K
M
A
E
K
A
N
---
L
E
L
R
T
V
K
T
E
D
E
L
K
K
Y
L
E
E
F
R
K
E
S
Q
N
I
K
V
L
I
L
V
S
N
D
E
E
L
------------
D
K
A
K
E
L
A
Q
K
M
E
I
D
V
R
T
R
K
V
--
T
S
P
D
-
E
A
K
R
W
-
I
K
E
F
S
E
-----
E
G
---------
G
-----
S
L
E
H
H
H
H
H
H
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
17
HHSearch
41.62
18%
-150
- C2 -
4IIW
-
?
A:
[216-257]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
M
S
V
H
K
F
L
T
M
S
S
I
I
E
K
E
A
T
E
--
N
V
D
R
K
M
I
A
S
V
F
Y
N
R
L
A
K
D
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
18
HHSearch
38.54
27%
-160
- C2 -
4JM1
2
?
A:
[30-62]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
A
D
S
D
S
G
Y
D
M
L
A
S
Q
F
L
E
E
A
K
K
E
G
V
S
G
L
K
G
V
L
I
V
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
30
Fugue
37.85
36%
-121
- C2 -
3B1J
2
?
C:
[4-25]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
P
F
---------
F
-
G
--
D
Y
C
S
E
N
P
D
A
A
E
C
-
L
I
Y
D
D
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
21
HHSearch
34.98
9%
-179
- C3 -
4P8I
2
TGL_BACSU
A:
[164-200]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
F
-
F
L
G
D
C
L
Y
F
K
N
P
E
F
DP-------
Q
-----
K
A
Q
W
R
G
E
--
N
V
------
I
L
L
-
G
--
E
D
K
Y
F
A
H
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
PsiBlast_PDB
33.29
26%
-171
- C4 -
1LI7
-
SYC_ECOLI
A:
[127-198]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
L
I
A
K
G
H
A
Y
V
A
DNG
D
V
M
F
D
VPTD
P
T
Y
G
V
L
S
R
Q
-------------------
K
R
N
-
P
M
D
F
V
L
W
K
M
S
K
E
G
---------
E
P
S
---
W
P
S
P
W
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------