@TOME V2.3
(Nov 2016)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : bsu02619: (2016-06-04 )
MGGLQTTGYAENASFSQLSACFSSRLVREDLFLMFSAYNQFTLLHSRLTMISYNGDDQ
Atome Classification :
(20 SA)
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------..-------------.......10....---...----.20---........30-------......-------.----.-----40----.......--------..----50........-----------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MG-------------GLQTTGYAENA
S
F
---
S
Q
L
----
S
A
C
---
F
S
S
R
L
V
R
E
D
L
-------
F
L
M
F
S
A
-------
Y
----
N
-----
Q
-----
F
T
L
L
H
S
R
--------
L
T
----
M
-
I
S
YNGDDQ-----------------------------------------------------------------------------
18
Fugue
62.86
22%
-123
- C2 -
2LKL
-
?
A:
[1-81]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
-------------
P
L
G
S
M
N
K
F
T
D
D
E
W
---
N
Q
L
----
K
Q
D
---
F
I
S
G
I
L
E
N
E
Q
-------
K
D
L
V
A
K
L
T
N
SDPI
M
----
N
-----
Q
-----
L
D
L
L
H
K
W
--------
L
D
R
H
R
D
M
-
C
E
K
W
K
S
K
E
D
I
L
H
K
L
N
E
Q
W
N
K
D----------------------------------------------------------------
19
Fugue
61.48
27%
-176
- C2 -
1UGI
3
UNGI_BPPB2
A:
[2-84]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
N
L
S
D
I
I
E
K
E
T
G
---
K
Q
L
V
I
Q
E
S
I
L
---
M
L
P
E
E
V
E
E
V
I
GNKPE
S
D
I
L
V
H
T
A
-------
Y
----
D
ESTD
E
N
-----
V
M
L
L
T
S
D
APEYKPW
A
L
V
----
I
-
Q
D
S
N
G
E
N
K
I
K
M
L-------------------------------------------------------------------------
26
Fugue
57.78
21%
-173
- C2 -
4F3F
-
C:
[6-64]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MC
P
S
-------------
G
K
K
A
R
E
I
D
E
S
L
I
F
YK
K
W
E
L
----
E
A
C
---
V
D
A
A
L
L
A
T
Q
M
-------
D
R
V
N
A
I
PFT----
Y
----
E
-----
Q
-----
L
D
V
L
K
H
K
--------
L
D
----
E
-
L
------------------------------------------------------------------------------------
5
PsiBlast_PDB
48.54
33%
-101
- C2 -
1XMJ
-
A:
[239-286]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Y
G
T
F
S
E
L
---
Q
N
L
----
Q
P
D
---
F
S
S
K
L
M
---
S
-------
F
D
Q
F
S
A
-------
E
----
R
-----
R
-----
N
S
I
L
T
E
T
--------
L
R
----
R
-
F
S
L
E
G
D
-------------------------------------------------------------------------------
24
Fugue
47.41
24%
-99
- C2 -
2LV2
2
A:
[1-85]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
G
HHHHHHSH
M
G
D
G
E
G
A
G
V
L
G
L
S
A
S
A
E
C
---
H
L
C
----
P
V
C
GES
F
A
S
K
G
A
Q
E
R
H
-------
L
R
L
L
H
A
-------
A
----
Q
-----
V
-----
F
P
C
K
Y
C
P
--------
A
T
----
F
-
Y
S
S
P
G
L
T
R
H
I
N
KCHPSENR------------------------------------------------------------------
6
PsiBlast_PDB
47.24
33%
-119
- C2 -
2BBO
-
A:
[240-287]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Y
G
T
F
S
E
L
---
Q
N
L
----
Q
P
D
---
F
S
S
K
L
M
---
S
-------
F
D
Q
F
S
A
-------
E
----
R
-----
R
-----
N
S
I
L
T
E
T
--------
L
R
----
R
-
F
S
L
E
G
D
-------------------------------------------------------------------------------
20
Fugue
44.96
22%
-174
- C- -
4LYL
-
UNGI_BPPB2
B:
[3-84]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
L
-------------
S
D
I
I
E
K
E
T
G
K
Q
L
V
---
I
Q
E
----
S
I
L
---
M
L
P
E
E
V
E
E
V
I
GNKPE
S
D
I
L
V
H
T
A
-------
Y
----
D
-----
E
STD
E
N
V
M
L
L
T
S
D
APEYKPW
A
L
V
----
I
-
Q
D
S
N
G
E
N
K
I
K
M
L-------------------------------------------------------------------------
17
Fugue
43.80
25%
-82
- C1 -
4BZF
3
GALM_BACSU
A:
[1-322]
------------------------------------------------------------------------A
N
F
I
E
K
I
T
Y
LG
T
P
A
I
K
A
G
N
EH
L
E
M
I
V
V
PEWGSNVISLVDKTTNVQL
L
R
E
P
ET
A
E
S
F
H
D
T
PTLY
G
I
P
I
L
FPPNRISDG
T
F
S
F
RG
R
T
Y
H
F
D
INEKDKHNHLHGFLYH
E
K
W
N
VV
T
T
K
Q
T
DE
G
V
I
V
E
T
E
I
D
LSEL
P
H
V
Q
K
Q
FPHH
A
V
V
R
M
T
Y
T
I
K
EN
T
L
F
K
H
A
T
V
M
N
KGK
E
A
F
P
W
G
I
G
Y
HTTFIFPAES
S
L
F
S
L
TAD
Q
Q
W
E
L
D
ERLLP
T
G
-------------
K
L
M
D
V
P
Y
K
E
A
L
H
E
---
G
M
D
----
L
-------
R
H
K
Q
L
D
D
V
-------
F
L
S
S
Y
Q
-------
K
RG
G
E
N
-----
Q
-----
A
V
I
Y
H
Q
H
--------
A
H
----
I
S
I
I
Y
K
A
D
E
Q
FK
H
W
V
V
Y
NADGKQGYLCPEPYTWVTNAVNLDLPSSLTG
L
Q
V
L
E
PG
E
E
T
T
A
K
S
S
I
T
I
E
L
N------------------
22
Fugue
41.67
12%
-202
- C2 -
3QE7
2
URAA_ECOLI
A:
[4-410]
RAIGVSERPP
L
L
Q
T
I
P
L
S
L
Q
H
L
F
A
M
F
G
A
T
V
L
V
P
V
L
F
HIN
P
A
T
V
L
L
F
N
G
I
G
T
L
L
Y
L
F
I
C
KGK
I
P
A
Y
L
G
S
SFAF
I
S
P
V
L
L
L
LPLG
Y
E
V
A
L
G
G
F
I
M
C
G
V
L
F
C
L
V
S
F
I
V
K
K
A
GT
G
W
L
D
V
L
F
P
P
A
A
M
G
A
I
V
A
V
I
G
L
E
L
A
G
V
A
A
G
M
A
GLLPAEGQTPD
S
K
T
I
I
I
S
I
T
T
L
A
V
T
V
L
G
S
V
L
FRGFLAI
I
P
I
L
I
G
V
L
V
G
Y
A
L
S
F
A
M
G
I
V
D
T
T
P
I
I
N
AHWFAL
P
T
L
Y
T
P
R
F
E
W
F
A
I
L
T
I
L
P
A
A
L
V
V
I
A
E
H
V
G
H
L
V
V
T
A
N
I
V
KKDLLRDPG
L
H
R
S
M
F
A
N
G
L
S
T
V
I
S
G
F
F
G
-------------
S
T
P
N
T
T
Y
G
E
N
I
G
V
---
M
A
I
----
T
R
V
---
Y
S
T
W
V
I
G
G
A
A
-------
I
F
A
I
L
L
-------------------------
S
C
V
G
K
L
--------
A
A
----
A
-
I
Q
M
I
P
L
P
V
M
G
G
V
S
L
L
L
Y
G
V
I
G
A
S
G
I
R
V
L
I
E
SKVDYNK
A
Q
N
L
I
L
T
S
V
I
L
I
I
G
V
S
GAKVNIGAAELKG
M
A
L
A
T
I
V
G
I
G
L
S
L
I
F
K
LIS
11
HHSearch
40.26
37%
-264
- C5 -
2INW
-
?
A:
[25-43]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
V
----
T
P
C
---
F
G
A
R
L
V
Q
E
G
N
-------
R
L
H
Y
--------------------------------------------------------------------------------------------------------------------------------------
4
PsiBlast_PDB
39.56
33%
-65
- C2 -
1XMI
-
CFTR_HUMAN
A:
[240-284]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Y
G
T
F
S
E
L
---
Q
N
L
----
Q
P
D
---
F
S
S
K
L
M
G
C
D
S
-------
F
D
Q
F
S
A
-------
E
----
R
-----
R
-----
N
S
I
L
T
E
T
--------
L
R
----
R
-
F
S
L
----------------------------------------------------------------------------------
14
HHSearch
37.90
33%
-285
- C3 -
1Z65
-
PRND_MOUSE
A:
[13-24]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
-----
C
M
L
L
A
S
H
--------
L
S
----
T
-
V
------------------------------------------------------------------------------------
13
HHSearch
36.65
40%
-358
- C4 -
4D7C
1
GLDN_RAT
A:
[247-266]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
F
-----
G
-----
L
R
M
S
Q
S
V
--------
L
A
----
M
-
L
S
Y
N
M
R
D
Q
-----------------------------------------------------------------------------
16
HHSearch
33.86
30%
-366
- C4 -
5AMO
-
NOE1_MOUSE
A:
[424-443]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
-----
P
-----
F
Q
N
K
Y
S
H
--------
I
S
----
M
-
L
D
Y
N
P
K
D
R
-----------------------------------------------------------------------------
1
PsiBlast_PDB
33.76
28%
-81
* C3 *
4LGL
1
GCSP_SYNY3
A:
[474-520]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
W
---
S
E
V
----
K
T
S
---
F
P
A
D
L
T
R
Q
S
L
-------
Y
L
Q
D
A
V
-------
F
----
N
-----
Q
-----
Y
---
H
S
E
--------
T
E
----
L
-
L
R
Y
----------------------------------------------------------------------------------
2
PsiBlast_PDB
33.52
28%
-63
- C3 -
4LHC
1
GCSP_SYNY3
A:
[474-520]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
W
---
S
E
V
----
K
T
S
---
F
P
A
D
L
T
R
Q
S
L
-------
Y
L
Q
D
A
V
-------
F
----
N
-----
Q
-----
Y
---
H
S
E
--------
T
E
----
L
-
L
R
Y
----------------------------------------------------------------------------------
3
PsiBlast_PDB
32.87
28%
-75
- C3 -
4LHD
1
GCSP_SYNY3
A:
[474-520]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
W
---
S
E
V
----
K
T
S
---
F
P
A
D
L
T
R
Q
S
L
-------
Y
L
Q
D
A
V
-------
F
----
N
-----
Q
-----
Y
---
H
S
E
--------
T
E
----
L
-
L
R
Y
----------------------------------------------------------------------------------
12
HHSearch
32.78
33%
-328
- C2 -
2M1J
-
PRND_SHEEP
A:
[13-24]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
-----
C
V
L
L
F
S
Q
--------
L
S
----
S
-
V
------------------------------------------------------------------------------------
9
HHSearch
30.73
30%
-328
- C4 -
4XAT
4
NOE1_HUMAN
A:
[223-242]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
-----
P
-----
F
Q
N
K
Y
S
H
--------
I
S
----
M
-
L
D
Y
N
P
K
D
R
-----------------------------------------------------------------------------
10
HHSearch
30.63
20%
-396
- C4 -
5AFB
2
AGRL3_MOUSE
A:
[311-330]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
-----
P
-----
F
P
N
S
Y
Q
Y
--------
I
A
----
A
-
V
D
Y
N
P
R
D
N
-----------------------------------------------------------------------------