@TOME V2.3
(Nov 2016)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : bsu02680: (2016-06-04 )
MSYGDSREKILSAATRLFQLQGYYGTGLNQIIKESGAPKGSLYYHFPGGKEQLAIEAVNEMKEYIRQKIADCMEACTDPAEGIQAFLKELSCQFSCTEDIEGLPVGLLAAETSLKSEPLREACHEAYKEWASVYEEKLRQTGCSESRAKEASTVVNAMIEGGILLSLTAKNSTPLLHISSCIPDLLKR
Atome Classification :
(20 SA)
.........10........20........30........40........-50........60........70....-....80........90........-100...-....110...---------....120.......130--.----.......----.----140--.----..-.------.....150.......160.......170.......180......
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
MSYG
D
S
R
E
K
I
L
S
A
A
T
R
L
F
Q
L
QGYYGT
G
L
N
Q
I
I
K
ESGAPKG
S
L
Y
Y
HFPGG-K
E
Q
L
A
I
E
A
V
N
E
M
K
E
Y
I
R
Q
K
I
A
D
C
M
E
A
-CT
D
P
A
E
G
I
Q
A
F
L
K
ELSC
Q
F
SCTED-IEGLPV-G
L
L
AAETSLK---------
S
E
P
L
R
E
A
C
H
E
A
Y
K
E
W
----
A
----
S
V
Y
E
E
K
L
----
R
----Q----T----GC-S------
E
S
R
A
K
E
A
S
T
V
V
N
A
M
IEG
G
I
L
L
S
L
TAKNST
P
L
L
H
I
S
S
C
I
P
D
L
LKR
133
Fugue
74.36
55%
-88
- C2 -
1SGM
-
YXAF_BACSU
A:
[5-188]
---
G
D
S
R
E
K
I
L
H
T
A
S
R
L
S
Q
L
Q
G
Y
H
A
T
G
L
N
Q
I
V
K
E
S
G
A
P
K
G
S
L
Y
H
F
F
P
N
G
-
K
E
E
L
A
I
E
A
V
T
Y
T
G
K
I
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E
H
L
I
Q
Q
S
M
D
E
-
S
S
D
P
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L
F
I
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K
T
A
S
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F
D
N
T
E
S
-
I
K
G
I
P
V
-
G
L
L
A
S
E
T
A
L
I
---------
S
E
P
L
R
T
V
C
M
K
V
F
K
S
W
----
E
----
A
V
F
A
R
K
L
----
M
----
E
----
N
----
G
F
-
A
------
E
E
E
A
N
Q
L
G
T
L
I
N
S
M
I
E
G
G
I
M
L
S
L
T
N
K
D
K
T
P
L
L
L
I
A
E
Q
I
P
V
L
V
R
-
1
PsiBlast_PDB
74.21
55%
-88
- C2 -
1SGM
-
YXAF_BACSU
A:
[5-188]
---
G
D
S
R
E
K
I
L
H
T
A
S
R
L
S
Q
L
Q
G
Y
H
A
T
G
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N
Q
I
V
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E
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G
A
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K
G
S
L
Y
H
F
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N
G
-
K
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E
A
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Y
T
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E
H
L
I
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M
D
E
-
S
S
D
P
V
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F
I
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T
A
S
Q
F
D
N
T
E
S
-
I
K
G
I
P
V
-
G
L
L
A
S
E
T
A
L
I
---------
S
E
P
L
R
T
V
C
M
K
V
F
K
S
W
----
E
----
A
V
F
A
R
K
L
----
M
----
E
----
N
----
G
F
-
A
------
E
E
E
A
N
Q
L
G
T
L
I
N
S
M
I
E
G
G
I
M
L
S
L
T
N
K
D
K
T
P
L
L
L
I
A
E
Q
I
P
V
L
V
R
-
111
HHSearch
68.98
56%
-78
- C2 -
1SGM
-
YXAF_BACSU
A:
[5-185]
---
G
D
S
R
E
K
I
L
H
T
A
S
R
L
S
Q
L
Q
G
Y
H
A
T
G
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N
Q
I
V
K
E
S
G
A
P
K
G
S
L
Y
H
F
F
P
-
N
G
K
E
E
L
A
I
E
A
V
T
Y
T
G
K
I
V
E
H
L
I
Q
Q
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M
D
E
-
S
S
D
P
V
E
A
I
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F
I
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K
T
A
S
Q
F
D
N
T
E
S
-
I
K
G
I
P
V
-
G
L
L
A
S
E
T
A
L
I
---------
S
E
P
L
R
T
V
C
M
K
V
F
K
S
W
----
E
----
A
V
F
A
R
K
L
----
M
----
E
----
N
----
G
F
-
A
------
E
E
E
A
N
Q
L
G
T
L
I
N
S
M
I
E
G
G
I
M
L
S
L
T
N
K
D
K
T
P
L
L
L
I
A
E
Q
I
P
V
----
116
HHSearch
57.24
27%
-123
* C2 *
3QBM
7
?
A:
[4-189]
-
K
G
Q
E
T
R
E
R
V
V
A
Q
A
A
A
L
F
N
V
S
G
Y
A
G
T
A
I
S
D
I
M
A
A
T
G
L
E
K
G
G
I
Y
R
H
F
E
-
S
-
K
E
Q
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A
L
A
A
F
D
Y
A
A
E
K
V
R
E
R
F
A
V
G
L
A
G
-
H
K
H
T
V
D
T
I
I
A
F
L
D
V
F
R
S
Y
A
E
R
-
P
P
L
V
G
G
C
P
I
-
L
N
T
A
I
E
S
D
D
T
---------
N
P
M
L
R
E
R
V
R
A
V
I
D
E
W
----
R
----
E
T
I
R
T
L
V
----
Q
----
T
G
I
A
R
G
----
E
I
R
P
------
E
V
D
A
D
R
L
A
L
L
I
I
A
T
M
E
G
A
V
M
L
A
R
I
L
E
T
A
T
P
L
E
H
A
Y
T
H
L
A
-----
118
HHSearch
55.00
22%
-138
- C2 -
3KNW
-
?
A:
[12-196]
--
S
E
A
K
R
Q
H
I
L
D
S
G
F
H
L
V
L
R
K
G
F
V
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V
G
L
Q
E
I
L
K
T
S
G
V
P
K
G
S
F
Y
H
Y
F
E
-
S
-
K
E
A
F
G
C
E
L
L
K
H
Y
I
S
D
Y
Q
I
R
L
N
Q
L
W
T
T
-
E
T
S
A
R
D
K
L
M
N
Y
L
Q
C
W
V
K
D
--------
E
S
C
L
I
-
V
K
M
A
A
E
V
A
D
L
---------
S
E
D
M
R
L
I
M
N
D
G
V
K
R
L
----
I
A
R
M
A
D
L
I
R
I
G
Q
----
Q
----
E
----
G
----
S
I
Q
T
------
S
V
V
P
D
V
L
A
Q
V
I
Y
Q
M
Y
L
G
A
A
L
L
S
K
L
Y
K
H
K
A
P
L
F
Q
A
L
E
S
T
------
2
PsiBlast_PDB
54.78
29%
-114
- C2 -
3QBM
7
?
A:
[7-183]
----
E
T
R
E
R
V
V
A
Q
A
A
A
L
F
N
V
S
G
Y
A
G
T
A
I
S
D
I
M
A
A
T
G
L
E
K
G
G
I
Y
R
H
F
E
-
S
-
K
E
Q
L
A
L
A
A
F
D
Y
A
A
E
K
V
R
E
R
F
A
V
G
L
A
G
-
H
K
H
T
V
D
T
I
I
A
F
L
D
V
F
R
S
Y
A
E
R
P
P
L
-
V
G
G
C
P
I
-
L
N
T
A
I
E
S
D
D
T
---------
N
P
M
L
R
E
R
V
R
A
V
I
D
E
W
----
R
----
E
T
I
-
R
T
L
----
V
----
Q
----
T
----
G
I
-
A
R
GEIRP
E
V
D
A
D
R
L
A
L
L
I
I
A
T
M
E
G
A
V
M
L
A
R
I
L
E
T
A
T
P
L
E
H
-----------
7
PsiBlast_PDB
53.57
24%
-114
- C2 -
4JNN
2
?
A:
[3-186]
----
E
A
R
R
R
I
L
E
T
A
W
R
L
I
A
R
R
G
Y
H
N
V
R
I
H
D
I
A
S
E
L
G
T
S
N
A
T
I
H
Y
H
F
P
S
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-
K
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I
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L
E
A
L
R
R
N
V
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A
F
D
R
Q
V
A
E
-
L
H
T
-
I
A
D
A
R
E
R
L
-
V
R
L
V
E
L
Q
------------
L
P
T
P
G
L
L
R
D
E
W
S
V
W
L
Q
V
W
T
E
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T
L
N
P
K
I
R
D
L
Y
N
D
A
Y
D
R
W
----
Y
----
Q
T
I
A
M
T
I
----
R
T
G
Q
K
Q
----
G
----
V
F
-
R
------
D
Q
D
A
D
E
L
A
T
R
L
S
A
L
I
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L
G
I
Q
V
L
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G
K
R
G
C
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V
D
H
M
R
Q
H
L
N
D
F
I
E
-
117
HHSearch
53.17
22%
-111
- C2 -
3RD3
-
?
A:
[7-192]
----
D
T
R
Q
H
L
L
D
T
G
Y
R
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A
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F
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G
L
N
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Y
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Y
F
K
-
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-
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E
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Y
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Y
L
A
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A
P
G
L
N
A
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E
R
L
M
S
Y
W
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N
A
C
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P
C
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-
E
Q
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C
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V
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V
K
L
S
A
E
V
A
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---------
S
E
S
M
R
I
T
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R
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G
S
D
G
I
I
E
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----
G
C
L
G
Q
G
R
----
D
----
D
----
G
----
S
L
-
A
------
P
C
D
A
R
H
M
A
S
A
L
Y
Q
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W
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G
A
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L
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K
L
H
R
S
P
G
P
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E
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A
M
Q
T
T
R
S
L
L
--
119
HHSearch
53.04
20%
-135
- C2 -
3ON4
2
?
A:
[7-186]
-
N
I
S
N
T
K
E
R
I
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A
V
A
E
A
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Q
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D
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Y
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A
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A
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E
K
I
Q
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A
I
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T
Y
N
S
E
--
N
K
M
C
L
G
-
G
M
F
A
S
D
F
Q
S
L
---------
P
V
S
I
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N
Q
A
K
K
F
F
E
L
I
----
I
----
E
W
L
K
G
V
L
----
E
----
T
----
N
----
G
Y
-
D
------
N
E
S
S
L
S
L
A
K
Q
I
I
S
L
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G
L
L
L
A
R
L
Y
G
D
E
T
F
L
E
G
V
R
H
F
I
------
120
HHSearch
52.15
17%
-127
- C- -
3BRU
-
ACUR_RHOS4
A:
[25-214]
--
A
S
L
A
H
Q
S
L
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R
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G
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E
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E
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G
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D
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R
-
N
-
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A
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E
A
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T
Y
F
A
R
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A
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L
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A
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A
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M
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G
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-
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R
G
C
L
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-
G
N
L
G
Q
E
M
G
A
L
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P
D
D
F
R
A
A
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V
L
E
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W
----
Q
----
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R
T
A
Q
L
F
----
R
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A
Q
A
C
----
G
----
E
L
S
A
------
D
H
D
P
D
A
L
A
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A
F
W
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P
D
P
L
H
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F
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R
T
F
G
R
H
F
V
-
14
PsiBlast_PDB
52.08
36%
-169
- C3 -
1UI5
-
?
A:
[10-85]
-----
T
R
A
T
I
I
G
A
A
A
D
L
F
D
R
R
G
Y
E
S
T
T
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S
E
I
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A
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A
G
V
T
K
G
A
L
Y
F
H
F
-
A
A
-
K
E
D
L
A
-
H
A
I
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E
I
Q
S
R
T
S
R
R
L
A
K
D
L
D
-------------------------------------------------------------------------------------------------------------------------------------------------------------
112
HHSearch
51.50
23%
-114
- C2 -
4YZE
-
NEMR_ECOLI
A:
[7-193]
---
H
D
T
R
E
H
L
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Q
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G
T
-
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T
-
V
K
L
S
A
E
V
S
D
L
---------
S
E
D
M
R
S
A
M
D
K
G
A
R
G
V
----
I
----
A
L
L
S
Q
A
L
----
E
----
N
----
G
R
E
N
H
S
L
T
F
------
S
G
E
P
L
Q
Q
A
Q
V
L
Y
A
L
W
L
G
A
N
L
Q
A
K
I
S
R
S
F
E
P
L
E
N
A
L
A
H
V
K
N
I
---
132
HHSearch
49.12
17%
-126
- C2 -
3FRQ
6
?
A:
[6-177]
--
K
L
K
S
D
D
E
V
L
E
A
A
T
V
V
L
K
R
C
G
P
I
E
F
T
L
S
G
V
A
K
E
V
G
L
S
R
A
A
L
I
Q
R
F
T
-
N
-
R
D
T
L
L
V
R
M
M
E
R
G
V
E
Q
V
R
H
Y
L
N
A
I
P
I
---
G
A
G
P
Q
G
L
W
E
F
L
Q
V
L
V
R
S
M
N
T
-
R
N
-
D
F
S
V
N
Y
-
L
I
S
W
Y
E
--
L
Q
---------
V
P
E
L
R
T
L
A
I
Q
R
N
R
A
V
----
V
----
E
G
I
R
K
R
L
----------------------
P
------
P
G
A
P
A
A
A
E
L
L
L
H
S
V
I
A
G
A
T
M
Q
W
A
V
D
P
D
G
E
L
A
D
H
V
L
A
Q
I
A
A
I
---
8
PsiBlast_PDB
48.89
24%
-106
- C2 -
4KWA
4
?
A:
[4-187]
----
E
A
R
R
R
I
L
E
T
A
W
R
L
I
A
R
R
G
Y
H
N
V
R
I
H
D
I
A
S
E
L
G
T
S
N
A
T
I
H
Y
H
F
P
S
K
-
K
D
I
L
L
E
A
L
R
R
N
V
K
L
A
F
D
R
Q
V
A
E
-
L
H
T
-
I
A
D
A
R
E
R
L
-
V
R
L
V
E
L
Q
------------
L
P
T
P
G
L
L
R
D
E
W
S
V
W
L
Q
V
W
T
E
S
T
L
N
P
K
I
R
D
L
Y
N
D
A
Y
D
R
W
----
Y
----
Q
T
I
A
M
T
I
----
R
T
G
Q
K
Q
----
G
----
V
F
-
R
------
D
Q
D
A
D
E
L
A
T
R
L
S
A
L
I
D
G
L
G
I
Q
V
L
T
G
K
R
G
C
S
V
D
H
M
R
Q
H
L
N
D
F
I
E
-
115
HHSearch
48.80
18%
-140
- C- -
2G7S
-
?
A:
[3-190]
-
N
P
Q
S
K
A
D
D
I
L
Q
C
A
R
T
L
I
I
R
G
G
Y
N
S
F
S
Y
A
D
I
S
Q
V
V
G
I
R
N
A
S
I
H
H
H
F
P
-
S
-
K
S
D
L
V
C
K
L
V
S
Q
Y
R
Q
E
A
E
A
G
I
A
E
L
E
K
N
-
I
S
D
P
L
E
Q
L
R
A
Y
I
G
Y
W
E
G
C
I
A
D
A
T
--
H
P
F
C
V
C
-
A
L
L
A
S
E
I
P
V
L
---------
P
E
T
V
V
L
E
V
R
A
H
F
R
S
L
----
S
----
D
W
L
T
A
V
L
E
R
G
I
A
----
Q
----
G
----
R
L
V
L
------
T
G
T
A
R
A
N
A
E
I
F
M
A
T
V
H
G
A
M
L
S
A
R
A
H
G
D
A
A
T
F
G
A
I
T
R
P
-
L
E
R
I
--
10
PsiBlast_PDB
48.79
24%
-107
- C2 -
4ICH
4
?
A:
[120-303]
----
E
A
R
R
R
I
L
E
T
A
W
R
L
I
A
R
R
G
Y
H
N
V
R
I
H
D
I
A
S
E
L
G
T
S
N
A
T
I
H
Y
H
F
P
S
K
-
K
D
I
L
L
E
A
L
R
R
N
V
K
L
A
F
D
R
Q
V
A
E
-
L
H
T
-
I
A
D
A
R
E
R
L
-
V
R
L
V
E
L
Q
------------
L
P
T
P
G
L
L
R
D
E
W
S
V
W
L
Q
V
W
T
E
S
T
L
N
P
K
I
R
D
L
Y
N
D
A
Y
D
R
W
----
Y
----
Q
T
I
A
M
T
I
----
R
T
G
Q
K
Q
----
G
----
V
F
-
R
------
D
Q
D
A
D
E
L
A
T
R
L
S
A
L
I
D
G
L
G
I
Q
V
L
T
G
K
R
G
C
S
V
D
H
M
R
Q
H
L
N
D
F
I
E
-
130
HHSearch
48.31
21%
-126
- C2 -
4KWA
4
?
A:
[2-185]
--
Q
S
E
A
R
R
R
I
L
E
T
A
W
R
L
I
A
R
R
G
Y
H
N
V
R
I
H
D
I
A
S
E
L
G
T
S
N
A
T
I
H
Y
H
F
P
-
S
-
K
K
D
I
L
L
E
A
L
R
R
N
V
K
L
A
F
D
R
Q
V
A
E
L
H
T
-
I
A
D
A
R
E
R
L
V
R
L
V
E
L
Q
L
P
T
P
G
L
-
L
R
-
D
E
W
S
V
W
-
L
Q
V
W
T
E
S
-
T
L
---------
N
P
K
I
R
D
L
Y
N
D
A
Y
D
R
W
----
Y
----
Q
T
I
A
M
T
I
----
R
----
T
G
Q
K
Q
G
----
V
F
-
R
------
D
Q
D
A
D
E
L
A
T
R
L
S
A
L
I
D
G
L
G
I
Q
V
L
T
G
K
R
G
C
S
V
D
H
M
R
Q
H
L
N
D
F
---
6
PsiBlast_PDB
48.21
29%
-142
- C3 -
3PPB
10
?
A:
[11-110]
------
K
Q
A
I
L
E
T
A
L
Q
L
F
V
S
Q
G
F
H
G
T
S
T
A
T
I
A
R
E
A
G
V
A
T
G
T
L
F
H
H
F
P
-
S
-
K
E
Q
L
----
L
E
Q
L
F
L
G
V
K
Q
E
F
A
D
A
I
Q
A
-
S
-------------
V
S
S
R
G
D
L
K
Q
D
-
A
E
Q
L
----
W
F
A
A
L
T
W
A
M
---------
A
N
P
L
K
Q
A
F
F
Q
L
Y
--------------------------------------------------------------------------------------------
127
HHSearch
47.27
15%
-133
- C2 -
1VI0
1
FADR_BACSU
A:
[8-187]
----
P
K
Y
M
Q
I
I
D
A
A
V
E
V
I
A
E
N
G
Y
H
Q
S
Q
V
S
K
I
A
K
Q
A
G
V
A
D
G
T
I
Y
L
Y
F
K
-
N
-
K
E
D
I
L
I
S
L
F
K
E
K
M
G
Q
F
I
E
R
M
E
E
D
I
K
E
-
K
A
T
A
K
E
K
L
A
L
V
I
S
K
H
F
S
L
L
A
G
-
D
H
-
N
-
L
A
I
V
---
T
Q
L
E
L
R
Q
S
---------
N
L
E
L
R
Q
K
I
N
E
I
L
K
G
Y
----
L
----
N
I
L
D
G
I
L
T
E
G
I
Q
----
S
----
G
----
E
I
K
E
------
G
L
D
V
R
L
A
R
Q
M
I
F
G
T
I
D
E
T
V
T
T
W
V
M
N
D
Q
K
Y
D
L
V
A
L
S
N
S
V
L
E
----
5
PsiBlast_PDB
47.10
24%
-102
- C2 -
4NEL
1
?
A:
[2-185]
----
E
A
R
R
R
I
L
E
T
A
W
R
L
I
A
R
R
G
Y
H
N
V
R
I
H
D
I
A
S
E
L
G
T
S
N
A
T
I
H
Y
H
F
P
S
K
-
K
D
I
L
L
E
A
L
R
R
N
V
K
L
A
F
D
R
Q
V
A
E
-
L
H
T
-
I
A
D
A
R
E
R
L
-
V
R
L
V
E
L
Q
------------
L
P
T
P
G
L
L
R
D
E
W
S
V
W
L
Q
V
W
T
E
S
T
L
N
P
K
I
R
D
L
Y
N
D
A
Y
D
R
W
----
Y
----
Q
T
I
A
M
T
I
----
R
T
G
Q
K
Q
----
G
----
V
F
-
R
------
D
Q
D
A
D
E
L
A
T
R
L
S
A
L
I
D
G
L
G
I
Q
V
L
T
G
K
R
G
C
S
V
D
H
M
R
Q
H
L
N
D
F
I
E
-