@TOME V2.3
(Nov 2016)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : bsu02720: (2016-06-04 )
MGKVKRNAPCPCGSGKKYKKCCGSKVVDFPAELAAKEAKQIQEDLVEYAFTVHRESISGFINQHDFLSAMDRQTKDISVFNLGIWGIFFHPLAGEKTIFEEYLQKKGDSITRPKTREIVESWQSMTPALLLLKDLKEGIIHFEDVITAKQFEVEMDASNQDLPPVGSLILGYPIHEAEKAEFFMQFTIFPVKRTEALISKVKKYADAAVKDGKTPEDFMKQEFNNVLFALLAEKDEEPQAEKAEVSTVEWANDLEKETAAAIEEGMSGEEYPTELIPAVIDIWKTFCEKKSPVIRKPEAFAAAVEYYVNAISLNGASVSQAKLAKKYGVSASTISSRYKEIESTLQDEADRFAQALSS
Atome Classification :
(20 SA)
------------------------------------------.......--..10.----------------.......20........30....----....40........50.....--...60......-----..70......---------..-80....--...---------.90.--.......100..--.....110.....---..120------.......-----------130.......140..-----...---------------.--.150.......160.......170......-----.-180.-......190.......200-........210.......220.......230....-----------...240----------.......250...-----....260.--------......270.-......280----.......290.---.------..---...300.......310..---.--....320-------.........330.......340.....------..350......------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
------------------------------------------MGKVKRN--APCPC----------------GSG
K
K
Y
K
K
C
CGSKVVD
F
P
A
E
L
A
A
----
K
E
A
K
Q
I
Q
E
D
L
V
E
Y
A
F
T
V
H
R
E
S
--
I
S
G
F
I
N
Q
H
D
F
L
-----
S
A
M
DRQTK
D
I
---------
S
V
-
F
N
L
G
I
W
--
G
I
F
---------FHPL--AGE
K
T
I
F
E
E
Y
L
Q
--KKGDSITR
P
K
T
R
E
---
I
V
E
S
W
------
Q
SM
T
P
A
L
-----------
L
L
L
K
D
L
K
E
G
I
I
H
F
E
D
-----VI
T
---------------
A
--
K
Q
F
E
V
E
MDASNQDLPPV
G
S
L
ILGYPIH
E
A
E
-----
K
-
A
E
F
F
-
M
Q
F
T
I
F
PV
K
R
T
E
A
L
I
S
K
-
V
-
K
K
Y
A
D
A
AVKDGK
T
P
E
D
F
M
K
Q
E
F
N
N
V
L
F
A
L
L
AEKDE-----------EPQAEK----------AEV
S
T
V
E
W
A
N
D
L
E
-----
K
E
T
A
A
A
I
E
--------EGMSGEEY
P
T
-
E
L
I
P
A
V
I
D
I
----
W
K
T
F
C
EKKSPV---I------RK---
P
E
A
F
A
A
A
V
E
Y
Y
V
N
A
I
SLN---G--AS
V
S
Q
---------
A
K
L
A
K
K
YGV
S
A
S
T
I
S
S
R
Y
K
E
I
E
S
T
L
Q
D
------
E
A
D
R
F
A
Q
A
LSS------------------
47
Fugue
65.05
19%
-68
- C3 -
4NNB
2
?
A:
[4-527]
T
S
L
Y
I
T
A
A
P
I
GA
V
P
K
F
L
DPFEATFIP
S
F
L
L
E
GFFD
A
D
R
C
A
S
I
A
A
D
L
K
T
D
G
W
E
V
V
P
A
----------------
G
-
G
R
L
L
Q
V
G
H
A
Q
P
I
A
H
F
P
K
P
W
L
A
A
L
S
N
K
L
A
R
R
I
V
L
Q
L
T
T
Y
G
W
I
V
S
E
Q
G
D
L
L
W
E
H
E
R
Q
H
H
Y
L
P
P
A
L
I
E
A
I
E
K
E
S
P
A
L
L
K
N
M
E
E
A
GW
I
A
-
C
A
A
G
Y
W
QA
G
K
A
---------
R
S
P
Y
LP
I
T
P
E
A
I
T
E
E
T
I
R
S
M
R
A
G
A
A
V
V
H
L
H
T
R
D
---
L
S
D
R
R
------
R
I
E
I
P
G
L
G
V
V
T
V
G
SQRNQ
I
V
L
D
D
Y
D
A
I
V
P
M
V
K
K
R
EPA
A
I
L
N
L
S
TSVRGDRHGARSK
L
--
R
R
A
H
L
K
F
Y
D
D
V
G
S
A
P
E
V
A
S
L
S
P
A
A
V
V
F
Q
G
G
G
G
Y
D
N
A
-
P
D
F
L
D
A
Q
F
D
H
F
E
R
V
G
T
R
P
E
V
E
V
-
F
N
H
A
I
V
D
N
A
T
S
---
L
Y
R
D
R
L
L
R
T
G
K
P
V
L
F
M
L
V
A
G
V
D
Q
-----------
Y
R
R
D
P
I
TGEVEDDSLI
A
R
V
V
R
E
E
I
S
S
L
L
A
-----
D
E
S
A
D
S
H
R
--------
R
A
V
--
E
L
A
I
G
-
Q
L
R
P
V
V
E
R
L
----
R
A
S
F
P
V
S
K
I
S
I
---
L
------
L
----
P
G
P
M
Q
N
L
L
V
D
V
A
L
G
L
G
L
D
---
G
--
I
R
V
G
------------
L
E
D
G
L
T
V
N
D
A
R
V
P
G
G
V
R
K
A
R
G
T
W
E
Q
------
V
S
L
V
R
E
E
L
L
G
R
G
A
T
I
L
T
A
A
Q
V
R
D
M
F
GLGI
14
PsiBlast_PDB
49.62
23%
-131
- C4 -
1IRX
-
SYK_PYRHO
A:
[304-492]
-----------------------------------------------------------------------------------------------------------------------------------
F
I
-----
Y
A
R
H
R
P
N
K
E
I
---------
K
I
D
L
G
L
G
I
L
--
N
L
Y
D
E
F
E
K
V
E
R
I
Y
F
G
V
--
E
G
-----
E
E
L
R
R
--
T
Y
E
L
S
M
P
K
K
P
E
R
L
---
V
A
Q
A
P
------
F
R
F
L
A
V
L
-----------
V
Q
L
P
H
L
T
E
-----
E
D
-----
I
I
N
---------------
V
L
I
K
Q
G
H
I
P
R
D
L
S
K
E
D
V
E
R
V
-
K
L
R
I
N
L
A
R
N
W
V
K
-----
K
Y
A
P
E
D
-
V
K
F
S
I
L
E
-
K
P
P
E
V
E
V
S
E
D
V
-
R
E
A
M
N
E
V
A
E
W
L
E
N
H
E
E
F
S
V
E
E
F
N
N
I
L
F
E
V
--------------------
A
K
R
----------
R
G
I
S
S
R
E
W
F
S
T
L
Y
-----
R
---------------------------------------------------------------------------------------------------------------------------------------------------------------------
44
Fugue
49.08
19%
-47
* C3 *
4MUO
-
YBIB_ECOLI
A:
[1-320]
--------------------------------------------
M
D
Y
R
K
--
I
I
K
E
I
----------------
G
R
G
K
N
H
A
R
-----------
D
L
D
R
----
D
T
A
R
G
L
Y
A
H
M
L
-------------
N
G
E
V
P
D
L
E
L
G
-----
G
V
L
I
A
L
R
I
K
----------------------------------
G
E
G
--
E
A
E
M
L
G
F
Y
E
A
M
Q
--
N
H
T
I
K
L
T
P
P
A
G
K
P
M
P
I
V
I
P
S
Y
NGARKQ
A
N
L
T
P
L
L
A
----------
I
L
L
H
K
L
G
-----
F
P
V
-----
V
V
H
---------------
G
------
V
S
E
D
P
T
R
V
L
T
E
T
I
F
E
L
M
G
I
T
P
T
L
H
G
G
-----
Q
-
A
Q
A
K
-
L
D
E
H
Q
P
V
F
M
P
V
G
A
F
C
P
P
-
L
-
E
K
Q
L
A
M
R
W
R
M
G
V
----------
R
N
S
A
H
T
L
A
K
L
A
T
P
-----------
F
A
E
G
E
A
----------
L
R
L
S
S
V
S
H
P
E
Y
I
G
-----
R
V
A
K
F
F
S
D
I
G
G
R
A
L
L
M
H
G
T
E
G
E
V
Y
A
N
P
Q
R
C
P
Q
I
N
L
I
D
REG
M
R
V
L
Y
E
K
Q
A
------------
K
D
---
P
E
T
T
A
Q
W
I
E
R
C
-----
L
A
---
G
--
S
E
P
I
P
---------
E
S
L
K
I
Q
M
A
C
C
L
V
A
T
G
E
-----
A
A
T
I
S
D
------
G
L
A
R
V
N
Q
A
F
--------------------
41
Fugue
48.23
14%
-84
- C4 -
1VOL
2
TF2B_HUMAN
A:
[1-203]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
M
M
-----
N
-
A
F
K
E
-
I
T
T
M
A
D
R
I
N
L
P
R
N
K
V
D
R
-
T
-
N
N
L
F
R
Q
A
Y
E
Q
K
S
L
K
G
R
A
N
D
A
I
A
S
A
C
L
Y
I
A
C
R
Q
E
G
V
P
R
T
F
K
E
I
C
A
V
S
R
I
S
K
K
E
----------
I
G
R
C
F
K
L
I
L
K
A
L
E
T
S
V
D
L
I
T
T
G
D
F
M
S
--------
R
F
C
S
N
L
C
L
P
K
-
Q
V
Q
M
A
A
T
H
I
----
A
R
K
A
V
E
L
D
L
V
P
---
G
------
R
S
---
P
I
S
V
A
A
A
A
I
Y
M
A
S
Q
A
--
S
---
A
--
E
K
R
T
Q
---------
K
E
I
G
D
I
A
G
V
A
D
V
T
I
R
Q
S
Y
R
L
I
Y
P
R
A
P
D
LFPTDF
K
F
D
T
P
V
D
K
L
P
Q
------------------
25
HHSearch
48.17
19%
-140
- C4 -
1C9B
3
TF2B_HUMAN
A:
[7-95]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
A
F
K
E
I
T
--------
T
M
A
D
R
I
N
L
P
R
-
N
I
V
D
R
T
N
N
L
----
F
K
Q
V
Y
E
Q
K
S
L
K
---
G
------
R
A
---
N
D
A
I
A
S
A
C
L
Y
I
A
C
R
Q
E
-----
G
--
V
P
R
T
F
---------
K
E
I
C
A
V
S
R
I
S
K
K
E
I
G
R
C
F
K
L
I
L
K
A
L
E
T
-----------------------------------
20
HHSearch
44.29
22%
-124
- C4 -
1C9B
3
TF2B_HUMAN
A:
[103-192]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
D
F
M
S
--------
R
F
C
S
N
L
C
L
P
K
-
Q
V
Q
M
A
A
T
H
I
----
A
R
K
A
V
E
L
D
L
V
P
---
G
------
R
S
---
P
I
S
V
A
A
A
A
I
Y
M
A
S
Q
A
S
-----
A
--
E
K
R
T
Q
---------
K
E
I
G
D
I
A
G
V
A
D
V
T
I
R
Q
S
Y
R
L
I
Y
P
R
A
P
D
------
L
F
P
--------------------------
19
HHSearch
42.53
18%
-101
- C4 -
1AIS
2
TF2B_PYRWO
B:
[107-195]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
P
T
D
Y
V
N
--------
K
F
A
D
E
L
G
L
S
E
-
K
V
R
R
R
A
I
E
I
----
L
D
E
A
Y
K
R
G
L
T
S
---
G
------
K
S
---
P
A
G
L
V
A
A
A
L
Y
I
A
S
L
L
E
-----
G
--
E
K
R
T
Q
---------
R
E
V
A
E
V
A
R
V
T
E
V
T
V
R
N
R
Y
K
E
L
V
E
K
L
K
I
-----------------------------------
45
Fugue
42.04
50%
-227
- C1 -
3I5W
1
DEF5_HUMAN
A:
[1-32]
---------------------------------------------------
A
T
C
Y
C
RTGRCATHESLS
G
V
C
E
I
S
G
R
L
Y
R
L
C
C
R
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
29
HHSearch
41.68
18%
-144
- C4 -
3M03
2
ORC6_HUMAN
A:
[9-92]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
A
V
Q
F
S
C
I
--
E
A
V
N
M
A
S
K
I
----
L
K
S
Y
E
S
S
L
-
P
Q
---
T
Q
Q
V
D
LD
L
S
---
R
P
L
F
T
S
A
A
L
L
S
A
C
K
I
L
-----
K
--
L
K
V
D
K
---------
N
K
M
V
A
T
S
G
V
K
K
A
I
F
D
R
L
C
K
Q
L
E
K
I
G
Q
------------------------------------
27
HHSearch
39.94
12%
-147
- C4 -
4BBR
-
TF2B_YEAST
M:
[127-214]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
A
A
F
A
K
I
T
--------
M
L
C
D
A
A
E
L
P
K
-
I
V
K
D
C
A
K
E
A
----
Y
K
L
C
H
D
E
K
T
L
K
---
G
------
K
S
---
M
E
S
I
M
A
A
S
I
L
I
G
C
R
R
A
-----
E
--
V
A
R
T
F
---------
K
E
I
Q
S
L
I
H
V
K
T
K
E
F
G
K
T
L
N
I
M
K
N
I
L
-------------------------------------
22
HHSearch
37.19
14%
-131
- C4 -
1AIS
2
B:
[10-100]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
F
A
L
S
E
L
D
--------
R
I
T
A
Q
L
K
L
P
R
-
H
V
E
E
E
A
A
R
L
----
Y
R
E
A
V
R
K
G
L
I
R
---
G
------
R
S
---
I
E
S
V
M
A
A
C
V
Y
A
A
C
R
L
L
-----
K
--
V
P
R
T
L
---------
D
E
I
A
D
I
A
R
V
D
K
K
E
I
G
R
S
Y
R
F
I
A
R
N
L
N
L
------
T
----------------------------
28
HHSearch
36.85
9%
-185
- C- -
4ROC
-
BRF2_HUMAN
A:
[69-203]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
-----
Q
R
G
L
R
R
V
R
--------
D
L
C
R
V
L
Q
L
P
P
-
T
F
E
D
T
A
V
A
Y
----
Y
Q
Q
A
Y
R
H
S
G
I
R
A
AR
L
------
Q
K
---
K
E
V
L
V
G
C
C
V
L
I
T
C
R
Q
H
-----
N
--
W
P
L
T
M
---------
G
A
I
C
T
L
L
Y
A
D
L
D
V
F
S
S
T
Y
M
Q
I
V
K
L
L
G
L
-----------------------------------
15
PsiBlast_PDB
36.50
29%
-141
- C4 -
3HE0
4
?
A:
[11-80]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
K
---
R
D
Q
I
L
A
A
A
E
Q
L
I
A
E
S
G
F
Q
---
G
----
L
S
M
---------
Q
K
L
A
N
E
A
G
V
A
A
G
T
I
Y
R
Y
F
S
D
K
E
H
L
L
E
E
V
R
L
N
--
V
A
K
R
I
A
S
A
V
Q
A
------------------
23
HHSearch
35.23
12%
-138
- C4 -
3H4C
1
?
A:
[11-115]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
H
-----
P
T
M
L
N
C
M
R
--------
G
L
H
K
K
A
V
L
P
E
-
P
V
L
D
R
G
I
E
L
----
A
R
A
F
V
G
G
R
R
A
R
---
G
------
Q
R
VER
Q
P
D
V
A
A
A
C
L
M
I
A
A
E
E
A
-----
Q
--
Q
P
L
P
L
---------
A
E
V
R
C
L
D
S
S
-
L
G
D
V
E
L
R
R
A
D
I
V
R
E
L
-------------------------------------
35
HHSearch
35.12
11%
-112
- C4 -
3G33
-
CCND3_HUMAN
B:
[181-254]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
H
A
Q
T
F
----
L
A
L
C
A
T
D
Y
T
F
A
---
M
------
Y
P
---
P
S
M
I
A
T
G
S
I
G
A
A
V
Q
G
L
G
-----MS
G
D
E
L
T
---------
E
L
L
A
G
I
T
G
T
E
V
D
C
L
R
A
C
Q
E
Q
I
E
A
A
L
R
E
------
S
----------------------------
42
Fugue
34.47
9%
-81
- C4 -
4BBR
1
TF2B_YEAST
M:
[22-214]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
T
C
P
E
C
-----
K
V
Y
---------------
P
--
P
K
I
V
E
R
F
S
E
G
D
V
V
C
A
L
C
G
L
V
L
S
D
K
L
V
D
T
R
S
-----
E
-
W
R
T
F
-
S
N
D
D
-----
H
N
G
D
D
P
S
R
-
V
-
G
E
A
S
N
P
L
L
D
G
N
N
L
S
T
R
I
G
K
G
E
T
T
D
-------
M
R
F
T
-----------
K
E
L
N
K
A
----------
Q
G
K
N
V
M
D
K
K
D
N
E
V
-----
Q
A
A
F
A
K
I
T
--------
M
L
C
D
A
A
E
L
P
K
-
I
V
K
D
C
A
K
E
A
----
Y
K
L
C
H
D
E
K
T
L
K
---
G
------
K
S
---
M
E
S
I
M
A
A
S
I
L
I
G
C
R
R
--
A
---
E
--
V
A
R
T
F
---------
K
E
I
Q
S
L
I
H
V
K
T
K
E
F
G
K
T
L
N
I
M
K
N
I
L
-------------------------------------
32
HHSearch
34.42
11%
-127
- C4 -
2W96
-
CCND1_HUMAN
A:
[181-264]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
H
A
Q
T
F
----
V
A
L
C
A
T
D
V
K
F
I
---
S
------
N
P
---
P
S
M
V
A
A
G
S
V
V
A
A
V
Q
G
L
-----
N
--
L
R
S
P
N
NFLSYYR
L
T
R
F
L
S
R
V
I
K
C
D
P
D
C
L
R
A
C
Q
E
Q
I
E
A
L
L
E
S
------
S
L
R
Q
A
Q
Q
----------------------
37
HHSearch
31.82
16%
-135
- C4 -
3M8J
-
?
A:
[40-88]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
S
---
I
------
H
S
---
D
R
V
I
L
A
M
K
D
Y
L
V
S
G
H
------------
S
R
---------
K
D
V
C
E
K
Y
Q
M
N
N
G
Y
F
S
T
T
L
G
R
L
T
R
L
N
V
L
-----------------------------------
33
HHSearch
31.69
8%
-146
- C4 -
2F2C
-
CGH2_SHV21
A:
[175-248]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
A
A
S
T
T
----
I
C
K
A
L
I
Q
P
N
I
A
---
L
------
L
S
---
P
G
L
I
C
A
G
G
L
L
T
T
I
E
T
D
N
T
NCR
P
--
W
T
C
Y
L
---------
E
D
L
S
S
I
L
N
F
S
T
N
T
V
R
T
V
K
D
Q
V
S
E
A
F
S
L
-----------------------------------
9
PsiBlast_PDB
31.51
71%
-9
- C5 -
2JQ5
1
?
A:
[3-16]
-----------------------------------------------------
C
V
C
----------------
G
S
G
K
T
Y
D
D
C
C
G
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------