@TOME V2.3
(Nov 2016)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : bsu02740: (2016-06-04 )
MVKVGLVDDYRVDLEKLEAIVSRMQDVEIVFSTDSAKEAYRRVKNGDIDLLLADIEMPHMSGYELADLIKSHSLDVDVIFVTGHGGYAVHAFDLNVHDYIMKPYYADRLAASFDRYLKKKTETSLNGRILIKQKSEMHVLQKKDIIFAERTGRSTTIVTTAEEVQTYQTLNDIKGDLPEKDFLRSHRSFIINIHYIKHFSAYTKHSFTVSFEGTSKKAMITKQQLDYFQNYYF
Atome Classification :
(20 SA)
.........10........--20...-.--....----30......---..40..-.-.....50......--..60........70...--.....80..--..--.--.--.--.90........100......----.110.......-120-----.......130.......140.......150.--......160.......170.......180........190-.........200.......210.......220.......230.-----------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
M
V
K
V
GLV
D
D
Y
RV
D
L
E
K
L
E
A
--
I
V
S
RM-Q--
D
V
E
I
----
V
F
STD
S
A
K
---
E
A
Y
R
R
V-K-NGD
I
D
L
L
L
ADIEM--PHMSG
Y
E
L
A
D
L
I
K
SHSL--
D
V
D
V
I
F
V
TG--HG--
G
--
Y
--
A
--
V
H
A
F
DL
N
V
H
D
Y
I
MK
P
Y
Y
A
D
R
----
L
A
A
S
F
D
R
Y
L
K
K
-KTE-----TSLN
G
R
I
L
I
K
QKSE
M
H
V
L
QKK
D
I
I
F
A
ERTGR--
S
T
T
I
V
T
T
A
E
E
V
Q
T
Y
Q
T
L
N
D
IKGDLP
E
K
D
-
F
L
R
S
H
R
S
F
I
---
I
N
I
H
Y
I
KHFSAYT
K
H
S
F
T
V
S
FEGTSKKA
M
I
T
K
Q
Q
L
D
Y
F
Q
NYYF-----------------------------------------------------------------------------------------------------------------------------------------------------------------------
34
HHSearch
76.07
18%
-128
- C2 -
4CBV
-
?
A:
[2-244]
--
K
V
L
I
L
E
D
V
I
E
H
Q
V
R
L
E
R
--
I
L
D
E
I
S
K
E
S
N
I
P
I
S
---
Y
K
T
T
G
K
V
R
---
E
F
E
E
Y
I
-
E
N
D
E
V
N
Q
L
Y
F
L
A
I
D
I
HG
I
E
K
K
G
F
E
V
A
Q
L
I
R
H
Y
N
P
--
Y
A
I
I
V
F
I
T
S
--
R
S
--
E
--
F
AT
L
--
T
Y
K
Y
Q
V
S
A
L
D
F
V
D
K
D
I
N
D
E
M
----
F
K
K
R
I
E
Q
N
I
F
Y
-
T
K
S
MLLEN
E
D
V
V
D
Y
F
D
Y
N
Y
K
G
N
D
L
K
I
P
Y
H
D
I
L
Y
I
E
T
T
G
V
SH
K
L
R
I
I
G
K
N
F
A
K
E
F
Y
G
T
M
T
D
I
Q
E
K
D
K
H
T
Q
R
F
Y
S
P
H
K
S
F
L
---
V
N
I
G
N
I
R
E
I
D
R
K
N
-
L
--
E
I
V
F
Y
E
D
H
-
R
C
P
I
S
R
L
K
I
R
K
L
K
D
I
L
------------------------------------------------------------------------------------------------------------------------------------------------------------------------
43
HHSearch
74.46
28%
-173
- C2 -
2QV0
-
MRKE_KLEPN
A:
[58-173]
-
M
K
V
I
I
V
E
D
E
F
L
A
Q
Q
E
L
S
W
--
L
I
N
T
H
-
S
--
Q
M
E
I
----
V
G
S
F
D
D
G
L
---
D
V
L
K
F
L
-
Q
-
H
N
K
V
D
A
I
F
L
D
I
N
I
--
P
S
L
D
G
V
L
L
A
Q
N
I
S
Q
F
A
H
--
K
P
F
I
V
F
I
T
A
--
W
K
--
E
--
H
--
A
--
V
E
A
F
E
L
E
A
F
D
Y
I
L
K
P
Y
Q
E
S
R
----
I
I
N
M
L
Q
K
L
T
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
13
PsiBlast_PDB
72.18
25%
-134
- C2 -
4E7O
1
?
A:
[21-145]
-
M
K
V
L
V
A
E
D
Q
S
M
L
R
D
A
M
C
Q
--
L
L
T
L
Q
-
P
--
D
V
E
S
----
V
L
Q
A
K
N
G
Q
---
E
A
I
Q
L
L
-
E
-
K
E
S
V
D
I
A
I
L
D
V
E
M
--
P
V
K
T
G
L
E
V
L
E
W
I
R
S
E
K
L
--
E
T
K
V
V
V
V
T
T
F
K
R
A
--
G
--
Y
--
F
--
E
R
A
V
K
A
G
V
D
A
Y
V
L
K
E
R
S
I
A
D
----
L
M
Q
T
L
H
T
V
L
E
G
-
R
K
E
-----
Y
S
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
PsiBlast_PDB
70.60
28%
-144
- C2 -
3H1G
4
CHEY_HELPY
A:
[6-125]
-
M
K
L
L
V
V
D
D
S
S
T
M
R
R
I
I
K
N
--
T
L
S
R
L
-
G
---
Y
E
D
----
V
L
E
A
E
H
G
V
---
E
A
W
E
K
L
D
A
-
N
A
D
T
K
V
L
I
T
D
W
N
M
--
P
E
M
N
G
L
D
L
V
K
K
V
R
S
D
S
R
FK
E
I
P
I
I
M
I
T
A
--
E
G
--
G
--
K
--
A
E
V
I
T
A
L
K
A
G
V
N
N
Y
I
V
K
P
F
T
P
Q
V
----
L
K
E
K
L
E
V
V
L
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
53
HHSearch
70.15
23%
-163
- C2 -
3CZ5
2
?
A:
[6-122]
-
A
R
I
M
L
V
D
D
H
P
I
V
R
E
G
Y
R
R
--
L
I
E
R
R
-
P
--
G
Y
A
V
----
V
A
E
A
A
D
A
G
---
E
A
Y
R
L
Y
-
R
-
E
T
T
P
D
I
V
V
M
D
L
T
L
--
P
G
P
G
G
I
E
A
T
R
H
I
R
Q
W
D
G
--
A
A
R
I
L
I
F
T
M
--
H
Q
--
G
S
A
F
--
A
--
L
K
A
F
E
A
G
A
S
G
Y
V
T
K
S
S
D
P
A
E
----
L
V
Q
A
I
E
A
I
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
45
HHSearch
69.68
23%
-152
- C2 -
3B2N
1
?
A:
[4-121]
-
T
S
L
I
I
A
E
D
Q
N
M
L
R
Q
A
M
V
Q
--
L
I
K
L
H
-
G
--
D
F
E
I
----
L
A
D
T
D
N
G
L
---
D
A
M
K
L
I
-
E
-
E
Y
N
P
N
V
V
I
L
D
I
E
M
--
P
G
M
T
G
L
E
V
L
A
E
I
R
K
K
H
L
--
N
I
K
V
I
I
V
T
T
--
F
K
--
R
P
G
Y
--
F
--
E
K
A
V
V
N
D
V
D
A
Y
V
L
K
E
R
S
I
E
E
----
L
V
E
T
I
N
K
V
N
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
15
PsiBlast_PDB
69.63
30%
-135
- C2 -
3DZD
-
?
A:
[2-122]
--
R
V
L
V
V
D
D
E
E
S
I
T
S
S
L
S
A
--
I
L
E
--------
E
E
----
G
Y
H
P
D
T
A
K
T
L
R
E
A
E
K
K
I
-
K
-
E
L
F
F
P
V
I
V
L
D
V
W
M
--
P
D
G
D
G
V
N
F
I
D
F
I
K
E
N
S
P
--
D
S
V
V
I
V
I
T
G
--
H
G
--
S
--
V
D
T
A
--
V
K
A
I
K
K
G
A
Y
E
F
L
E
K
P
F
S
V
E
R
F
L
L
T
I
K
H
A
F
E
E
Y
S
K
K
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10
PsiBlast_PDB
69.10
28%
-140
- C2 -
3GWG
4
CHEY_HELPY
A:
[6-125]
-
M
K
L
L
V
V
D
D
S
S
T
M
R
R
I
I
K
N
--
T
L
S
R
L
-
G
---
Y
E
D
----
V
L
E
A
E
H
G
V
---
E
A
W
E
K
L
D
A
-
N
A
D
T
K
V
L
I
T
D
W
N
M
--
P
E
M
N
G
L
D
L
V
K
K
V
R
S
D
S
R
FK
E
I
P
I
I
M
I
T
T
--
E
G
--
G
--
K
--
A
E
V
I
T
A
L
K
A
G
V
N
N
Y
I
V
K
P
F
T
P
Q
V
----
L
K
E
K
L
E
V
V
L
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
68.91
29%
-162
- C2 -
2QV0
-
MRKE_KLEPN
A:
[58-165]
-
M
K
V
I
I
V
E
D
E
F
L
A
Q
Q
E
L
S
W
--
L
I
N
T
H
-
S
--
Q
M
E
I
----
V
G
S
F
D
D
G
L
---
D
V
L
K
F
L
-
Q
-
H
N
K
V
D
A
I
F
L
D
I
N
I
--
P
S
L
D
G
V
L
L
A
Q
N
I
S
Q
F
A
H
--
K
P
F
I
V
F
I
T
A
--
W
K
--
E
--
H
--
A
--
V
E
A
F
E
L
E
A
F
D
Y
I
L
K
P
Y
Q
E
S
R
----
I
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
PsiBlast_PDB
68.88
28%
-140
- C2 -
3H1E
4
CHEY_HELPY
A:
[6-125]
-
M
K
L
L
V
V
D
D
S
S
T
M
R
R
I
I
K
N
--
T
L
S
R
L
-
G
---
Y
E
D
----
V
L
E
A
E
H
G
V
---
E
A
W
E
K
L
D
A
-
N
A
D
T
K
V
L
I
T
D
W
N
M
--
P
E
M
N
G
L
D
L
V
K
K
V
R
S
D
S
R
FK
E
I
P
I
I
M
I
T
T
--
E
G
--
G
--
K
--
A
E
V
I
T
A
L
K
A
G
V
N
N
Y
I
V
K
P
F
T
P
Q
V
----
L
K
E
K
L
E
V
V
L
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
PsiBlast_PDB
67.63
29%
-155
- C- -
3CFY
-
?
A:
[29-129]
--------------------------------------
I
F
H
V
E
T
G
R
---
D
A
I
Q
F
I
-
E
-
R
S
K
P
Q
L
I
I
L
D
L
K
L
--
P
D
M
S
G
E
D
V
L
D
W
I
N
Q
N
D
I
--
P
T
S
V
I
I
A
T
A
--
H
G
--
S
V
D
L
--
A
--
V
N
L
I
Q
K
G
A
E
D
F
L
E
K
P
I
N
A
D
R
----
L
K
T
S
V
A
L
H
L
K
R
A
K
L
E
-----
D
L
V
E
G
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
60
Fugue
67.59
19%
-154
- C2 -
1NY5
8
?
A:
[1-384]
-
M
N
V
L
V
I
E
D
D
K
V
F
R
G
L
L
E
E
--
Y
L
S
M
K
-
G
--
I
K
V
E
----
S
A
E
--
R
G
K
---
E
A
Y
K
L
L
-
S
-
E
K
H
F
N
V
V
L
L
D
L
L
L
--
P
D
V
N
G
L
E
I
L
K
W
I
K
E
R
S
P
--
E
T
E
V
I
V
I
T
G
--
H
G
T
I
K
--
T
--
A
--
V
E
A
M
K
M
G
A
Y
D
F
L
T
K
P
C
M
L
E
E
----
I
E
L
T
I
N
K
A
I
E
H
-
R
K
L
-----
R
K
E
N
E
L
L
R
R
E
K
D
L
K
E
E
----------
E
Y
V
F
E
--
S
P
K
M
K
E
I
L
E
K
I
K
K
I
S
C
--------
A
E
C
P
-
V
L
I
T
G
E
S
G
V
G
K
E
V
V
A
R
L
I
H
K
L
S
D
R
S
K
E
P
F
V
A
L
N
V
A
S
I
P
R
D
I
F
E
A
E
L
F
G
Y
E
K
G
A
F
T
GAV
S
S
K
E
G
F
F
E
L
A
DG
G
T
L
F
L
D
EIGELS
L
E
A
Q
A
K
L
L
R
V
I
E
SG
K
F
Y
R
LGGRK
E
I
E
V
N
V
R
I
L
A
A
T
NRN
I
K
E
L
V
K
E
GKFR
E
D
L
Y
Y
R
L
G
V
I
E
I
E
I
P
P
LRERKED
I
I
P
L
A
N
H
F
L
K
K
F
S
R
K
Y
AKEVEGFT
K
S
A
Q
E
L
L
L
S
YPWYGN
V
R
E
L
K
N
V
I
E
R
A
V
L
F
SEGKFID
R
G
E
L
S
C
L
V
31
PsiBlast_CBE
66.94
31%
-147
- C2 -
4D6X
3
?
A:
[20-135]
-----
L
V
V
D
D
E
V
D
I
R
D
L
V
A
G
I
L
S
D
E
G
-
H
--
E
T
R
T
----
A
F
D
A
D
S
A
L
---
A
A
---
I
-
N
-
D
R
A
P
R
L
V
F
L
D
I
W
L
QG
S
R
L
D
G
L
A
L
L
D
E
I
K
K
Q
H
P
--
E
L
P
V
V
M
I
S
G
--
H
G
--
N
--
I
E
T
A
--
V
S
A
I
R
R
G
A
Y
D
F
I
E
K
P
F
K
A
D
R
----
L
I
L
V
A
E
R
A
L
E
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
14
PsiBlast_PDB
66.29
25%
-134
- C2 -
4E7P
2
?
A:
[21-145]
-
M
K
V
L
V
A
E
D
Q
S
M
L
R
D
A
M
C
Q
--
L
L
T
L
Q
-
P
--
D
V
E
S
----
V
L
Q
A
K
N
G
Q
---
E
A
I
Q
L
L
-
E
-
K
E
S
V
D
I
A
I
L
D
V
E
M
--
P
V
K
T
G
L
E
V
L
E
W
I
R
S
E
K
L
--
E
T
K
V
V
V
V
T
T
FK
R
A
--
G
--
Y
--
F
--
E
R
A
V
K
A
G
V
D
A
Y
V
L
K
E
R
S
I
A
D
----
L
M
Q
T
L
H
T
V
L
E
G
-
R
K
E
-----
Y
S
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
PsiBlast_PDB
66.21
37%
-142
- C2 -
1L5Z
5
DCTD_RHIME
A:
[8-122]
-----
L
I
D
D
D
R
-
D
L
R
K
-------
A
M
Q
-
Q
--
T
L
E
L
A
G
F
T
V
S
S
F
A
S
A
T
---
E
A
L
A
G
L
-
S
-
A
D
F
A
G
I
V
I
S
D
I
R
M
--
P
G
M
D
G
L
A
L
F
R
K
I
L
A
L
D
P
--
D
L
P
M
I
L
V
T
G
--
H
G
D
I
P
--
M
--
A
--
V
Q
A
I
Q
D
G
A
Y
D
F
I
A
K
P
F
A
A
D
R
----
L
V
Q
S
A
R
R
A
E
K
K
-
R
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
30
PsiBlast_CBE
65.78
31%
-145
- C2 -
4D6X
2
?
B:
[20-135]
-----
L
V
V
D
D
E
V
D
I
R
D
L
V
A
GI
L
S
D
E
G
-
H
--
E
T
R
T
----
A
F
D
A
D
S
A
L
---
A
A
---
I
-
N
-
D
R
A
P
R
L
V
F
L
D
I
W
L
QG
S
R
L
D
G
L
A
L
L
D
E
I
K
K
Q
H
P
--
E
L
P
V
V
M
I
S
G
--
H
G
--
N
--
I
ET
A
--
V
S
A
I
R
R
G
A
Y
D
F
I
E
K
P
F
K
A
D
R
----
L
I
L
V
A
E
R
A
L
E
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
51
HHSearch
65.59
23%
-154
- C2 -
4QYW
-
CHEY_THEMA
A:
[3-115]
-
K
R
V
L
I
V
D
D
A
A
F
M
R
M
M
L
K
D
--
I
I
T
K
A
-
G
---
Y
E
V
----
A
G
E
A
T
N
G
R
---
E
A
V
E
K
Y
-
K
-
E
L
K
P
D
I
V
T
M
-
I
T
M
--
P
E
M
N
G
I
D
A
I
K
E
I
M
K
I
D
P
--
N
A
K
I
I
V
A
S
A
--
M
G
--
Q
Q
A
M
--
V
--
I
E
A
I
K
A
G
A
K
D
F
I
V
K
P
F
Q
P
S
R
----
V
V
E
A
L
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
44
HHSearch
65.00
16%
-189
- C2 -
3F6C
1
EVGA_ECOLI
A:
[2-118]
-
L
N
A
I
I
I
D
D
H
P
L
A
I
A
A
I
R
N
--
L
L
I
K
N
-
D
---
I
E
I
----
L
A
E
L
T
E
G
G
---
S
A
V
Q
R
V
-
E
-
T
L
K
P
D
I
V
I
I
D
V
D
I
--
P
G
V
N
G
I
Q
V
L
E
T
L
R
K
R
Q
Y
--
S
G
I
I
I
I
V
S
A
--
K
----F-
Y
--
G
--
K
H
C
A
D
A
G
A
N
G
F
V
S
K
K
E
G
M
N
N
----
I
I
A
A
I
E
A
A
K
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
39
HHSearch
64.54
20%
-174
- C2 -
1KGS
4
?
A:
[3-123]
-
V
R
V
L
V
V
E
D
E
R
D
L
A
D
L
I
T
E
--
A
L
K
K
E
-
M
---
F
T
V
-----
D
V
C
Y
D
G
E
---
E
G
M
Y
M
A
-
L
-
N
E
P
F
D
V
V
I
L
D
I
M
L
--
P
V
H
D
G
W
E
I
L
K
S
M
R
E
S
G
V
--
N
T
P
V
L
M
L
T
A
--
L
S
--
D
V
E
Y
--
R
--
V
K
G
L
N
M
G
A
D
D
Y
L
P
K
P
F
D
L
R
E
----
L
I
A
R
V
R
A
L
I
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
64.37
37%
-128
- C2 -
1L5Y
11
DCTD_RHIME
A:
[8-122]
-----
L
I
D
D
D
R
-
D
L
R
K
-------
A
M
Q
-
Q
--
T
L
E
L
A
GFT
V
S
S
F
A
S
A
T
---
E
A
L
A
G
L
-
S
-
A
D
F
A
G
I
V
I
S
D
I
R
M
--
P
G
M
D
G
L
A
L
F
R
K
I
L
A
L
D
P
--
D
L
P
M
I
L
V
T
G
--
H
G
D
I
P
--
M
--
A
--
V
Q
A
I
Q
D
G
A
Y
D
F
I
A
K
P
F
A
A
D
R
----
L
V
Q
S
A
R
R
A
E
K
K
-
R
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------