@TOME V2.3
(Nov 2016)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : bsu02760: (2016-06-04 )
MLSHIYKKEMIDALRDRKTILLTILVPMIMMLGLVFFYESMLSDKGEQYTLAVGHSLPPALESKLNEIDEISVKTFAKPEEAVDEGKADAYLNVPKEFDSYVNSMTPFKVDVYGNSIDQGSSNAMQLVQSALDQYKNEIVQQRLTNKHIDQSVIQPFTIQQKEADEEKGTSAIMLSAILPMLILTSIVSGAMPIALDIMAGEKDRKSIEALLLTPVSRNKVLVGKWLAVSTFGVASGVFALVFLILSTVLFTENLKTAFQLGDHMWSVIGASALIIVLSALLISAMELFISIMSSSVKEAQSYMSLVVFLPVFPMFFIFSKAPNQFDLSYFLIPFLNLHALFKQLLFGMVDPATILSTSGTIAVLIAIFFLLARACFLKDKWVLPK
Atome Classification :
(20 SA)
.......-..10.....-...20.-------.......30.......-.40........50........60..-.-----....--.70..---.-.....80....-....90.---.......100.---..--.-.-..110.---.--.....120.......130.......140.-------------......150.......160...-----....170......---.180.--------------------------------------------------------------.....----.190......-.200--------.........210.......220.......230.......240.......250.......260......------------..270.......280...-....290...--....300....------...310...---------....320.......330.......340.....----..350.......360.......370.......380....--------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
M
L
S
H
I
Y
K
-
K
E
M
I
D
A
L
RD-R
K
T
I
L
L
-------
T
I
L
V
P
M
I
M
M
L
G
L
V
F
F
Y
-
E
S
M
L
SDKG
E
Q
Y
T
L
AVGHSL
P
P
A
L
E
S
-
K
-----
L
N
E
I
--
D
E
I
S
V
---K-TFA
K
P
E
E
A
V
DE-GKA
D
A
Y
L---NV
P
K
E
F
D
S
Y
V
N---SM--T-
P
-
F
K
V
D
V
Y---G--NSIDQGS
S
N
A
M
Q
L
V
Q
S
A
L
D
Q
Y
K
N
E
I
V
Q
Q
R
-------------
L
T
N
K
HI
D
Q
S
VIQ
P
F
T
IQQKEAD-----EEKGT
S
A
I
M
L
S
A
I
---
L
P
M
L
I
--------------------------------------------------------------
L
T
S
I
V----SGAM
P
I
A
L
D
I
-MA----------GE
K
D
R
K
S
I
E
A
L
L
LTPVSRN
K
V
L
V
G
K
W
L
A
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F
G
V
A
S
G
V
F
A
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F
L
I
L
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V
L
F
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E
N
L
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T
A
F
Q
-
L
G
D
H
M
W
S
------------
V
I
G
A
S
A
L
I
I
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L
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A
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L
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A
-
M
E
L
F
I
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I
M
S
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--
S
V
K
E
A
Q
S
Y
M
S
L
------
V
V
F
L
P
V
F
P
M
---------
F
F
I
FSKAPNQF
D
L
S
Y
F
L
I
P
F
L
N
L
H
A
L
F
K
Q
L
L
F
----GMVD
P
A
T
I
LSTS
G
T
I
A
V
L
I
A
I
F
F
L
L
A
R
A
C
F
LKDKWVLPK--------------
22
Fugue
73.44
15%
-137
- C3 -
3ERR
1
DYHC1_MOUSE (first)
A:
[3-529]
D
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-------
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-
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--
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---
R
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G
E
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W
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---
I
I
MR
E
-
N
-
F
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N
FS
A
--
E
E
I
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A
I
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K
N
Y
M
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A
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A
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A
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N
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L
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L
E
-----
D
D
A
K
D
N
Q
Q
K
L
E
A
L
---
L
L
Q
V
P
LPPWPGAPVGGEEANREIKRVGGPPEFSFPPLD
H
V
A
L
M
E
K
N
GWWEPRISQVSGSR
S
Y
A
L
K
G
D
L
A
L
Y
E
----
L
A
L
L
R
F
A
M
D
F
-
M
A
R
R
G
F
L
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M
T
L
P
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Y
A
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A
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A
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--
E
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G
T
A
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L
N
A
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P
Y
E
A
L
P
L
R
Y
A
-
G
Y
A
P
A
F
R
SEAGSFGKDVRG
L
M
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Q
F
H
K
V
E
Q
Y
V
L
T
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A
S
L
E
A
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R
A
F
Q
E
--
L
L
E
N
A
E
E
I
L
R
L
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E
L
P
Y
R
L
V
E
V
A
T
G
D
M
GPGKW
R
Q
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D
I
E
V
Y
L
P
S
E
G
R
Y
R
E
T
H
S
C
S
A
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A
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A
N
L
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R
D
PE
G
R
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R
Y
A
Y
T
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N
N
T
A
-
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P
Q
ALIPYMGKEVLEPG
24
Fugue
61.85
18%
-118
* C5 *
1DMU
6
T2B1_BACIU
A:
[1-299]
-
M
Y
N
L
H
R
-
E
K
I
F
M
S
Y
N
Q
-
N
K
Q
Y
L
E
D
N
-----
P
E
I
Q
E
K
I
E
L
Y
G
L
N
L
L
N
-
E
V
I
S
D
N
-------------
E
E
E
I
R
A
-
D
-----
Y
N
E
A
--
N
F
L
-----
H
-
P
F
W
M
N
Y
P
P
L
D
R
-
G
K
M
P
K
---------------
G
---
D
Q
--
I
-
P
-
W
-------------
I
E
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K
A
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R
L
V
S
Q
R
E
D
----------------------------------
I
T
V
R
E
I
G
-----
L
P
T
G
P
D
E
R
Y
L
L
T
S
---
P
T
I
Y
S
--------------------------------------------------------------
L
T
N
G
F
----
T
D
S
I
M
M
F
V
D
I
-
K
S
----------
V
G
P
-
R
D
S
D
Y
D
L
V
L
S
P
N
Q
-----------
V
S
G
N
G
D
W
A
Q
L
E
G
G
I
----------
Q
N
N
Q
Q
T
I
Q
G
P
R
S
S
Q
I
F
------------
L
P
T
I
P
P
L
Y
I
L
S
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G
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I
A
P
V
-
V
H
L
F
I
K
P
I
Y
A
MR
S
L
T
K
G
D
T
G
Q
S
L
Y
K
----
I
K
L
A
S
V
P
N
G
---------
L
G
L
F
C
N
P
G
Y
A
F
D
S
A
Y
K
F
--------
L
F
R
P
-------
G
K
D
D
R
T
K
S
L
L
Q
K
R
V
R
V
D
L
R
V
L
D
K
I
G
P
R
V
M
T
I
D
----
M
D
K
--------------
6
HHSearch
48.93
16%
-82
- C6 -
3CNI
2
?
A:
[11-137]
----------------------------------------------------------
Q
K
V
A
I
V
R
E
D
T
G
T
I
A
E
L
A
-----
E
K
A
L
G
-
N
M
V
D
I
VYA
G
S
D
L
K
E
A
E
E
A
V
K
K
-
E
K
A
P
A
I
I
---
V
I
P
K
G
F
S
Q
S
L
E
---
S
G
--
E
-
K
-
A
R
L
E
I
V
---
W
Y
L
R
G
T
G
L
S
E
A
V
S
T
G
T
I
S
S
L
I
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S
L
K
V
Q
L
A
S
F
L
-------------
L
N
D
P
K
K
A
Q
L
L
F
D
P
L
E
I
V
Q
H
T
Y
L
-----
R
G
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
25
Fugue
43.85
12%
-61
- C5 -
5AJ3
-
?
G:
[35-242]
----------------------------------------------------------------
S
R
Y
G
P
E
Y
K
D
-
P
-----
Q
I
D
K
--
E
Y
Y
R
K
---
P
-
L
A
E
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T
E
E
E
K
Y
E
-
R
D
F
K
K
T
Q
---
L
I
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A
A
P
A
T
K
T
S
---
S
V
--
F
E
D
-
P
V
I
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K
F
---
T
--
N
M
M
M
K
G
G
N
--
K
V
L
A
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L
E
A
V
K
R
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Q
-------------
F
A
K
Y
H
A
A
S
--------
A
E
E
Q
A
T
-----
I
E
R
N
P
Y
T
I
F
H
Q
A
L
KNC
E
P
V
I
G
--------------------------------------------------------------
L
V
P
I
L
----
K
G
G
H
F
Y
Q
V
P
V
P
L
A
----------
D
R
R
R
R
F
L
A
M
K
W
M
I
A
E
C
R
E
K
K
H
R
R
V
L
M
P
E
K
L
S
Q
E
L
L
E
A
F
H
N
Q
G
P
V
I
K
R
K
H
D
M
H
K
M
A
E
A
N
R
A
-
L
A
H
Y
R
W
W
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
HHSearch
39.74
17%
-105
- C6 -
2P0S
3
?
A:
[8-100]
--------------------------------------------------------
D
M
K
T
I
A
I
A
D
R
T
G
E
-
Y
E
Q
-
L
-----
F
K
E
N
DE
F
R
F
V
H
AE-
K
-
T
A
E
E
Y
R
K
M
G
A
D
K
S
G
I
D
A
V
L
---
E
I
R
Q
D
L
L
-----------
E
-
D
P
N
A
V
A
I
Y
---
G
--
Y
K
Q
L
P
A
--
S
V
S
N
H
I
S
R
I
L
S
D
Y
L
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
14
HHSearch
38.15
14%
-533
- C6 -
4EV6
-
CORA_METJA
A:
[325-338]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
I
M
I
F
V
Y
I
F
R
R
S
G
W
------------------
3
PsiBlast_PDB
35.00
31%
-251
- C6 -
4XEA
2
?
A:
[343-396]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
I
D
E
-
E
A
----------
F
E
R
A
R
K
K
I
M
G
R
V
L
M
S
L
D
Q
N
A
F
L
V
R
N
W
V
T
Y
F
L
R
G
A
E
A
F
A
F
A
D
V
I
A
V
L
Q
T
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
17
Fugue
32.49
25%
-109
- C6 -
2ROD
-
APR_MOUSE
B:
[17-43]
----------------------------------------------------------------
A
E
L
P
P
E
F
A
A
-
Q
-----
L
R
K
I
--
G
D
K
V
Y
---
C
-
T
W
S
A
P
D
M
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
32.39
27%
0
- C- -
2XKJ
1
?
E:
[198-272]
-------------------------------------------------------------------------------------------------------------------------------------------------------------
G
E
M
N
A
I
Q
L
R
E
T
T
M
D
P
N
T
R
R
L
V
Q
L
D
-------------
L
D
D
A
H
L
T
A
G
L
L
D
K
L
L
A
K
K
R
A
A
D
RKQWL
E
Q
K
G
N
L
A
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
20
Fugue
31.86
23%
-69
- C2 -
4Q28
-
PEPL_HUMAN
A:
[1645-1754]
--------
G
H
H
H
H
H
H
S
H
M
R
R
S
I
V
V
I
H
PDTG
R
E
L
S
P
E
E
A
H
R
A
G
L
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W
N
M
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E
C
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W
E
E
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K
G
-
P
N
G
E
S
S
-
V
-----
I
H
D
----
R
K
S
G
---
K
-
K
F
S
-
I
E
E
A
L
Q
S
-
G
R
L
T
--------
P
A
Q
Y
D
R
Y
V
N
KDM
S
I
--
Q
-
E
-
L
A
V
L
V
S
---
G
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
16
Fugue
31.84
17%
-90
* C6 *
2C9L
2
BZLF1_EBVB9
Y:
[1-63]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
L
E
I
K
R
Y
K
N
R
V
A
A
R
K
-------------
S
R
A
K
F
--
K
Q
L
L
Q
H
Y
R
E
V
A
A
A
K
S
-----
S
E
N
D
R
L
R
L
L
L
K
Q
M
---
C
P
S
L
D
--------------------------------------------------------------
V
D
S
I
I
----
P
R
T
P
D
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
13
HHSearch
30.66
16%
-47
- C6 -
3TQL
-
?
A:
[139-157]
------------------------------------------------------------------------------------------------
S
E
E
D
A
L
M
D
L
T
S
-
G
R
V
D
A
V
V
---
G
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
PsiBlast_PDB
26.52
28%
14
- C6 -
4YSK
-
?
A:
[222-277]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
Y
V
T
T
V
A
E
Q
R
-------------
A
S
N
I
H
I
H
Q
G
I
D
E
D
S
F
V
A
M
R
E
A
R
-----
D
K
--------
T
L
E
---
M
P
V
L
I
--------------------------------------------------------------
L
P
S
V
Q
V
N
M
R
S
G
Q
L
P
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
PsiBlast_PDB
25.72
28%
28
- C6 -
4YSL
1
?
A:
[222-277]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
Y
V
T
T
V
A
E
Q
R
-------------
A
S
N
I
H
I
H
Q
G
I
D
E
D
S
F
V
A
M
R
E
A
R
-----
D
K
--------
T
L
E
---
M
P
V
L
I
--------------------------------------------------------------
L
P
S
V
Q
V
N
M
R
S
G
Q
L
P
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
25.69
31%
-21
- C4 -
4QJ3
-
?
B:
[434-503]
---------------------------------------------
F
G
-
D
A
L
L
I
E
P
L
D
K
Y
P
L
A
P
G
V
P
L
P
----
S
-
P
-----
Q
D
L
M
--
G
R
I
L
V
---
K
-
N
K
K
R
------------
S
E
V
---
N
A
T
E
E
M
S
T
L
V
N
---
Y
I
--
E
-
P
-
V
K
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
15
HHSearch
25.48
18%
-306
- C6 -
1IFK
-
CAPSD_BPIF1
A:
[29-45]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
V
V
L
V
V
G
A
T
V
G
I
K
L
F
K
K
---------------------
9
HHSearch
24.24
25%
-256
- C6 -
4XTR
-
?
G:
[15-30]
---------------
R
W
-
R
V
Y
L
L
I
-------
V
L
L
V
M
L
L
F
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
12
HHSearch
23.92
18%
-
- C1 -
3A1G
-
PB2_I34A1
B:
[5-15]
--------
K
E
L
R
N
L
M
S
Q
-
S
R
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10
HHSearch
23.15
12%
-32
- C- -
3Q9D
-
Y803_CHLPN
A:
[19-35]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
G
N
L
K
R
I
F
A
T
P
I
G
Y
T
T
F
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
18
Fugue
22.27
21%
147
- C6 -
2MNQ
-
PTMA_HUMAN
A:
[1-28]
----------------------------------------------------------------------
S
D
A
-
A
-----
V
D
T
S
--
S
E
I
T
T
---
K
-
D
L
K
E
K
K
E
V
V
E
E
-
A
E
N
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------