@TOME V2.3
(Nov 2016)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : bsu03120: (2016-06-05 )
MTQQYIVEPKKGLGLKLKKGQILKVVDVEGQQVADFVAYHAKDFYEHLDQGATIDANHSIHVKVNDHLYSNLYKPMLTLIEDTVGKHDLLLPACRPDMNRLLYGKQKDEFQDTCYDNMNRALEQFGVPKPHMHYPFAIFMNTVLDEKGNLSVETPLSNAGDYVRLRAEMDLIVAFSSCPIEKGKCNGDSVTSIRVEVS
Atome Classification :
(20 SA)
-------------------------------------------------------------------------------------------------------------.........10.......--.20........30.....-----..-..40......-----.----.50........-------60...-----.....70.--....--------...-----80...-.-..----------.-..90.-...--.----...100---...--.....-110-------.........120--..-...-...----.130----.-------------------.-.....140...-....150.......160..-----.....170.-----.....-----.180.......------190.-----.....---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
-------------------------------------------------------------------------------------------------------------MTQQYIVEPKKGLGLKLK--KGQILKVVDVEG-QQVAD-----FV-AYHAKDFYEH-----L----DQGATIDANHS-------IHVKV-----NDHLYSNL--YKPM--------LTL-----I-EDT-V-GK----------H-DLLLP-ACR--P----DMNRL----LYG--KQKDE-F---------QDTCYDNMNR----AL-EQF-GVP----KPHM----H-------------------Y-PFAIFMNTVLD-EKGNLSVETPLSNAGDYVR-----LRAEMDLIV-----AFSSC-----PIEKGKCNGDS------VTSI-----RVEVS---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
13
PsiBlast_PDB
99.44
30%
0
- C- -
3DI4
5
?
A:
[48-251]
--------------------------------------------------------------------------------------------------------------
T
G
E
V
L
V
P
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C
F
E
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--
A
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-
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D
-----
L
N
-
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-----
F
----
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S
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-
R
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-------
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T
-----
G
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PY
L
R
P
M
--------
A
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-----
I
-
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YGIDQYGGSV
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--
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----
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N
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----
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A
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--
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----
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---------
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----
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-
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-----
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G
-----
N
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-----
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--
G
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C
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E
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
PsiBlast_PDB
75.38
30%
-112
- C2 -
3ORU
2
?
A:
[37-227]
-----------------------------------------------------------------------------------------------------------------
Y
T
I
P
A
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--
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-------------------
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----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
12
PsiBlast_PDB
74.44
30%
-102
- C2 -
3SIY
2
?
A:
[37-227]
-----------------------------------------------------------------------------------------------------------------
Y
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I
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A
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-------
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-----
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--
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--------
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-----
L
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----------
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--------
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------
Y
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--
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G
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E
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Y
---------
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N
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----
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-
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L
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----
P
T
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----
P
-------------------
C
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-----
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------
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----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
29
HHSearch
73.61
30%
-112
* C2 *
3ORU
2
?
A:
[34-227]
--------------------------------------------------------------------------------------------------------------
E
A
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-------
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-----
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--
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--------
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---------
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----
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----
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-------------------
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-----
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----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
Fugue
42.99
18%
-106
- C1 -
1CKQ
1
T2E1_ECOLX
A:
[16-276]
------------------------------------------------------------------------------------------------------------------------
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SES
H
-------------------
F
-
P
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V
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N
L
E
Y
NSGI-
L
N
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M
-----
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QGDG
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GRDL
F
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SK-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
33
HHSearch
42.95
15%
-317
- C2 -
4DB5
1
?
A:
[85-104]
------------------------------------------------------------------------------------------------------------------------
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--
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8
Fugue
39.47
19%
-38
- C1 -
2VAB
1
HA1B_MOUSE
A:
[1-178]
---------------------------------------------------------------------------------------------------------G
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Y
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------
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RARWM
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9
Fugue
34.00
17%
-91
- C1 -
4TQ0
-
ATG5_HUMAN
A:
[4-273]
------------------------------------------------------------------------------------------------D
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PMLETP
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YPDNFLH
I
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P-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
Fugue
33.88
12%
-110
- C1 -
3LD1
-
R1A_IBVM
A:
[5-363]
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DQKAEIPVES
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VCL-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
37
HHSearch
33.03
31%
-194
- C1 -
3D4R
2
?
A:
[84-119]
-----------------------------------------------------------------------------------------------------------------
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-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
Fugue
32.29
9%
-76
- C1 -
2CVB
-
?
A:
[2-188]
-------------------------------------------------------------------------------------------------------------
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Q
S
H
D
-----
L
E
A
A
I
E
A
L
L
-----
R
G
E
E
P
-----
P
L
K
E
A
P
A
I
G
C
T
------
I
K
W
R
PGNEP
E
V
R
I
G
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
Fugue
32.18
13%
-65
- C1 -
1PQZ
-
?
A:
[5-242]
--------------------------------------------------------------------------------------------------------GSES
G
L
R
Y
A
Y
T
L
V
V
D
G
T
A
N
------
T
A
R
C
F
G
T
G
H
V
D
G
-
E
A
F
V
G
-----
Y
S
-
N
N
K
T
H
G
I
G
R
W
-----
V
----
N
A
S
H
V
E
E
E
N
K
E
-------
F
V
R
Q
C
-----
K
E
-
L
Q
A
E
L
--
D
K
M
Q
--------
N
N
S
-----
A
-
V
I
G
-
V
-
K
T
----------
V
-
Q
L
D
V
G
-
C
T
S
--
K
----
I
E
K
H
Y
----
A
Y
D
--
G
N
E
T
E
-
D
DTATSASE
R
A
R
D
C
Q
K
K
L
T
E
Y
R
K
L
V
L
-
A
S
A
-
V
S
P
----
Q
L
E
V
----
E
R
R
S
S
G
REG
G
M
R
L
R
C
F
A
R
DY
Y
-
P
A
D
L
E
I
R
W
W
K
D
-
D
G
G
G
G
A
L
P
Q
T
S
K
Q
H
H
D
P
L
P
SGQG
L
Y
Q
K
H
I
D
V
Y
V
D
GGLE
H
V
Y
S
C
-----
R
V
K
-
G
I
A
T
G
L
E
------
L
Q
I
V
-----
R
W
K
G
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
27
PsiBlast_PDB
31.20
50%
-206
* C1 *
3CUE
-
BET3_YEAST
D:
[51-80]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
V
-----
N
D
H
L
Y
S
M
G
--
Y
N
I
G
--------
C
R
L
-----
I
-
E
D
F
-
L
-
A
R
----------
T
---
A
L
P
-
R
C
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
31
HHSearch
30.31
22%
-173
- C2 -
4G9S
-
PLIG_ECOLI
B:
[28-59]
-----------------------------------------------------------------------------------------------------------------------
D
T
Y
T
F
Y
A
K
--
K
G
Q
K
V
H
V
S
I
S
N
E
-
G
--
A
D
-----
T
Y
-
L
F
G
P
G
I
D
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
38
HHSearch
29.09
19%
-191
- C1 -
2MRN
-
MAZE_ECOLI
A:
[14-40]
----------------------------------------------------------------------------------------------------------------
A
V
R
I
P
A
T
L
M
Q
A
L
N
L
N
--
I
D
D
E
V
K
I
D
L
V
D
G
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
16
PsiBlast_PDB
25.73
33%
9
- C3 -
5FSD
1
?
C:
[461-505]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
-
G
D
----------
P
-
S
A
S
I
P
-
T
P
Q
--
P
----
V
M
G
R
R
----
M
Y
G
--
T
V
G
D
L
-
I
---------
H
D
T
N
I
T
F
M
S
K
----
S
S
-
I
Q
Q
-
G
V
P
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
15
PsiBlast_PDB
25.14
33%
18
- C3 -
5A6T
-
URE1_SPOPA
C:
[461-505]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
-
G
D
----------
P
-
S
A
S
I
P
-
T
P
Q
--
P
----
V
M
G
R
R
----
M
Y
G
--
T
V
G
D
L
-
I
---------
H
D
T
N
I
T
F
M
S
K
----
S
S
-
I
Q
Q
-
G
V
P
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
Fugue
23.95
15%
-19
- C1 -
1JI8
-
?
A:
[1-111]
--------------------------------------------------------------------------------------------------------------------
M
P
V
K
C
P
G
E
Y
Q
V
--
D
G
K
K
V
I
L
D
E
D
C
F
M
Q
N
P
E
D
-----
W
D
-
E
K
V
A
E
W
L
A
R
E
-----
L
----
E
G
I
Q
K
M
T
E
E
H
W
-------
K
L
V
K
Y
-----
L
R
E
Y
W
E
T
F
--
G
T
C
-------------------------------------------
P
-
P
I
K
--
M
----
V
T
K
E
T
------
G
--
F
S
L
E
K
-
I
---------
Y
Q
L
F
P
S
G
P
A
H
----
G
A
-
C
K
V
A
G
A
P
----
K
P
T
G
----
C
-------------------
V
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10
Fugue
22.90
13%
-58
- C1 -
1IRX
2
SYK_PYRHO
A:
[3-523]
--------------------------------------------H
W
A
D
Y
I
A
D
K
I
I
R
ERGEKE
K
Y
V
V
E
S
G
I
T
PSGYVH
V
G
N
F
R
E
L
F
T
A
Y
I
V
G
H
A
L
R
D
K
G
Y
E
V
R
H
I
H
M
W
DD
Y
D
R
F
R
K
V
P
R
N
V
P
Q
E
W
K
D
Y
--
L
G
M
P
I
S
E
V
P
D
P
W
-
G
C
H
E
S
-----
Y
A
-
E
H
F
M
R
K
F
E
E
E
-----
V
----
E
K
L
G
I
----
E
V
-------
D
L
L
Y
A
-----
S
E
L
Y
K
R
G
E
--
Y
S
E
E
--------
I
R
L
-----
A
-
F
E
K
-
R
-
D
K
----------
I
-
M
E
I
L
N
-
K
Y
R
--
E
----
I
A
K
Q
P
----
P
L
P
--
E
N
W
W
P
-
A
---------
M
V
Y
C
P
E
H
R
R
E
----
A
E
-
I
I
E
-
W
D
G
----
G
W
K
V
----
K
-------------------
Y
-
K
C
P
------
E
G
-
H
E
G
W
V
D
I
R
S
G
------
N
V
K
-----
L
R
W
R
V
D
W
P
M
-----
R
W
S
H
F
GVD
F
E
P
A
G
K
D
H
L
V
A
G
S
------
S
Y
D
T
-----
G
K
E
I
I
K
E
V
YG
K
E
A
P
L
S
L
M
Y
E
F
V
G
I
K
GQNVIL
L
S
D
L
Y
E
V
LE
P
G
L
V
R
F
I
Y
A
R
H
RPN
K
E
I
K
I
DLGLG
I
L
N
L
Y
D
E
F
E
K
V
E
R
I
Y
F
GVEGE
E
L
R
R
T
Y
E
L
S
MPKKPERLVAQAP
F
R
F
L
A
V
L
V
Q
LPHLT
E
E
D
I
I
N
V
L
I
K
Q
GHIPRDLS
K
E
D
V
E
R
V
K
L
R
I
N
L
A
R
N
W
V
K
KYAPEDV
K
F
S
I
L
EKPPEVEVS
E
D
V
R
E
A
M
N
E
V
A
E
W
L
E
N
H
EEFS
V
E
E
F
N
N
I
L
F
E
V
A
K
R
R
GIS
S
R
E
W
F
S
T
L
Y
R
L
F
IGKERGPR
L
A
S
F
L
A
S
LD
R
S
F
V
I
K
R
L
R
LEG
17
PsiBlast_PDB
22.33
33%
13
- C3 -
5FSE
1
?
C:
[461-505]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
-
G
D
----------
P
-
S
A
S
I
P
-
T
P
Q
--
P
----
V
M
G
R
R
----
M
Y
G
--
T
V
G
D
L
-
I
---------
H
D
T
N
I
T
F
M
S
K
----
S
S
-
I
Q
Q
-
G
V
P
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------