@TOME V2.3
(Nov 2016)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : bsu03290: (2016-06-05 )
MVNKDVTKVCIGKIEELPEQLGKTVYIEDKELAVFKLSDGSIRAIENRCPHKGGVLAEGIVSGQYVFCPMHDWKISLEDGIVQEPDHGCVKTYETLIEGEHVYLVY
Atome Classification :
(20 SA)
---........--.10........20......-..30......-.-.40........50....-.....-60---.--.----.----.-....70........80..------..-.---------.------.------..----------90.......-.100....--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
---MVN
K
D
V
T
K
--
V
C
I
G
K
I
E
E
L
P
E
QLG
K
T
V
Y
I
-EDK
E
L
A
V
F
K
L-S-DG
S
I
R
A
I
E
NRCP-HKGG-
V
L
A
E
G-IV---S--G----
Q
----
Y
-
V
F
C
PMH
D
W
K
I
SLEDG-IV------QE-P---------D------
H
------
G
C
----------
V
K
T
Y
E
T
L
IE-G
E
H
V
Y
L
VY--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
84
HHSearch
72.96
27%
-170
- C3 -
3C0D
-
?
A:
[4-108]
--------
L
T
K
--
V
K
L
C
Q
L
D
D
L
M
P
F
I
G
A
T
V
L
I
-
E
G
E
R
V
A
L
F
Y
I
-
P
-
D
S
G
V
Y
A
V
Q
D
W
D
P
-
I
G
K
A
Y
V
M
S
R
G
-
I
V
---
G
--
D
I
NG
E
M
----
C
-
V
A
S
P
L
Y
K
Q
H
F
S
L
K
S
G
-
Q
C
------
L
E
-
D
---------
E
------
A
------
H
C
----------
L
K
T
W
R
V
T
V
D
-
D
N
Q
V
C
Y
L
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
99
HHSearch
71.55
27%
-130
- C3 -
2ZYL
1
KSHA_MYCTU
A:
[22-132]
------
Y
A
R
G
W
--
H
C
L
G
V
A
K
D
Y
L
E
G
K
P
H
G
V
E
A
-
F
G
T
K
L
V
V
F
A
D
-
S
-
H
G
D
L
K
V
L
D
G
Y
C
R
-
H
M
G
G
-
D
L
S
E
G
-
T
V
---
K
--
G
----
D
----
E
-
V
A
C
P
F
H
D
W
R
W
G
G
-
D
G
-
R
C
------
K
L
V
P
---------
Y
ARRTPR
M
------
A
R
----------
T
R
S
W
T
T
D
V
R
-
S
G
L
L
F
V
W
H
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
95
HHSearch
70.89
25%
-123
- C3 -
4QDF
2
?
B:
[23-139]
------
F
A
R
G
W
--
H
C
L
G
L
A
K
D
F
K
D
G
K
P
H
S
V
H
A
-
F
G
T
K
L
V
V
W
A
D
-
S
-
N
D
E
I
R
I
L
D
A
Y
C
R
-
H
M
G
G
-
D
L
S
Q
G
-
T
V
---
K
--
G
----
D
----
E
-
I
A
C
P
F
H
D
W
R
W
G
-
G
N
G
-
R
C
------
K
N
I
P
---------
Y
------
A
RRVPPI
A
K
----------
T
R
A
W
H
T
L
D
Q
-
D
G
L
L
F
V
W
H
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
104
Fugue
69.75
24%
-137
- C3 -
2ZYL
3
KSHA_MYCTU
A:
[14-374]
DAG
A
L
P
T
R
Y
A
R
G
W
H
C
L
G
V
A
K
D
Y
L
E
G
K
P
H
G
V
E
A
-
F
G
T
K
L
V
V
F
A
D
-
S
-
H
G
D
L
K
V
L
D
G
Y
C
R
-
H
M
G
G
-
D
L
S
E
G
-
T
V
---
K
--
G
----
D
----
E
-
V
A
C
P
F
H
D
W
R
W
G
G
D
G
R
-
C
K
LVPYAR
R
T
-
P
---------
R
------
M
------
A
R
----------
T
R
S
W
T
T
D
V
R
-
S
G
L
L
F
V
W
H
D
HEGNPPDPAVRIPEIPEAASDEWTDWR
W
N
R
I
L
I
E
GSN
C
R
D
I
I
DNVTDMAHFFYIHFGLPT
Y
F
K
N
V
F
E
GH
I
A
S
Q
Y
L
H
N
V
G
R
PDVDDLGTSYG
E
A
H
L
D
S
E
A
S
Y
FGP
S
F
M
I
N
W
L
H
N
R
YGNY
K
S
E
S
I
L
I
N
C
H
Y
P
VTQN
S
F
V
L
Q
W
G
V
I
V
EKPKGMSMT
D
K
L
S
R
V
F
T
E
G
V
S
K
G
F
L
Q
D
V
E
I
W
K
H
K
T
R
I
DNPLLVEEDGA
V
Y
Q
L
R
R
W
Y
E
Q
FYVDVADIKPEMV
E
R
F
E
I
E
V
D
T
K
R
A
N
E
F
W
N
A
E
V
E
K
N
L
KS
91
HHSearch
69.46
27%
-157
- C3 -
3D89
2
RFESD_MOUSE
A:
[14-132]
-------
K
Y
T
S
--
V
C
V
G
R
E
E
D
I
R
K
S
E
R
M
T
A
V
V
-
H
D
R
E
V
V
I
F
Y
H
---
K
G
E
Y
H
A
M
D
I
R
C
Y
-
H
S
G
G
-
P
L
H
L
G
-
E
I
---
E
--
D
F
NG
Q
S
----
C
-
I
V
C
P
W
H
K
Y
K
I
T
L
A
T
G
-
E
G
------
L
Y
Q
S
I
N
PK
P
K
W
C
S
K
------
G
------
V
K
----------
Q
R
I
H
T
V
K
V
D
-
N
G
N
I
Y
V
T
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
96
HHSearch
69.42
24%
-120
- C3 -
4QDC
2
?
A:
[27-136]
-----
R
F
A
R
G
W
--
H
C
L
G
L
L
R
D
F
Q
D
G
K
P
H
S
I
E
A
-
F
G
T
K
L
V
V
F
A
D
-
S
-
K
G
Q
L
N
V
L
D
A
Y
C
R
-
H
M
G
G
-
D
L
S
R
G
-
E
V
---
K
--
G
----
D
----
S
-
I
A
C
P
F
H
D
W
R
W
N
G
-
K
G
-
K
C
------
T
D
I
P
---------
Y
------
A
RRVPPI
A
K
----------
T
R
A
W
T
T
L
E
R
-
N
G
Q
L
Y
V
W
N
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
101
Fugue
68.65
25%
-174
- C3 -
3D89
2
RFESD_MOUSE
A:
[14-154]
-------
K
Y
T
S
--
V
C
V
G
R
E
E
D
I
R
K
S
E
R
M
T
A
V
V
-
H
D
R
E
V
V
I
F
Y
H
---
K
G
E
Y
H
A
M
D
I
R
C
Y
-
H
S
G
G
-
P
L
H
L
G
-
E
I
---
E
--
D
----
F
NG
Q
S
C
-
I
V
C
P
W
H
K
Y
K
I
T
L
A
T
G
-
E
G
------
L
Y
-
Q
---------
S
------
I
------
N
P
K
P
K
W
C
S
KGVK
Q
R
I
H
T
V
K
V
D
-
N
G
N
I
Y
V
T
L
S
KEPFKCDS
D
Y
Y
A
T
G
E
F
K
V
I
Q-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
102
Fugue
67.74
26%
-131
- C3 -
2JO6
-
NIRD_ECOLI
A:
[1-110]
---
M
S
Q
W
------
K
D
I
C
K
I
D
D
I
L
P
E
T
G
V
C
A
L
L
-
G
D
E
Q
V
A
I
F
R
P
-
Y
H
S
D
Q
V
F
A
I
S
N
I
D
P
-
F
F
E
S
S
V
L
S
R
G
-
L
I
---
A
--
E
H
QG
E
L
----
W
-
V
A
S
P
L
K
K
Q
R
F
R
L
S
D
G
-
L
C
------
M
E
-
D
---------
E
------
Q
------
F
S
----------
V
K
H
Y
E
A
R
V
K
-
D
G
V
V
Q
L
R
G
GS------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
14
PsiBlast_PDB
66.39
29%
-152
- C3 -
3C0D
-
?
A:
[4-105]
--------
L
T
K
--
V
K
L
C
Q
L
D
D
L
M
P
F
I
G
A
T
V
L
I
-
E
G
E
R
V
A
L
F
Y
I
-
P
-
D
S
G
V
Y
A
V
Q
D
W
D
P
I
G
K
A
Y
-
V
M
S
R
G
-
I
V
G
D
I
N
--
G
----
E
----
M
C
V
A
S
P
L
Y
K
Q
H
F
S
L
K
S
G
-
Q
C
------
L
E
-
D
---------
E
------
A
------
H
C
----------
L
K
T
W
R
V
T
V
D
-
D
N
Q
V
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
83
HHSearch
66.14
25%
-135
- C3 -
2JO6
-
NIRD_ECOLI
A:
[1-107]
-------
M
S
Q
W
--
K
D
I
C
K
I
D
D
I
L
P
E
T
G
V
C
A
L
L
-
G
D
E
Q
V
A
I
F
R
P
Y
H
-
S
D
Q
V
F
A
I
S
N
I
D
P
-
F
F
E
S
S
V
L
S
R
G
-
L
I
---
A
--
E
H
QG
E
L
----
W
-
V
A
S
P
L
K
K
Q
R
F
R
L
S
D
G
-
L
C
------
M
E
-
D
---------
E
------
Q
------
F
S
----------
V
K
H
Y
E
A
R
V
K
-
D
G
V
V
Q
L
R
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
81
HHSearch
65.34
20%
-152
- C3 -
3GCE
1
?
A:
[9-110]
--------
S
T
P
--
V
R
V
A
T
L
D
Q
L
K
P
G
V
P
T
A
F
D
V
-
D
G
D
E
V
M
V
V
R
D
---
G
D
S
V
Y
A
I
S
N
L
C
S
-
H
A
E
A
-
Y
L
D
M
G
-
V
F
---
H
--
A
ES--
L
----
E
-
I
E
C
P
L
H
V
G
R
F
D
V
R
T
G
-
A
P
------
T
A
L
P
---------
C
------
V
------
L
P
----------
V
R
A
Y
D
V
V
V
D
-
G
T
E
I
L
V
A
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
98
HHSearch
64.10
21%
-146
- C3 -
3GCF
2
?
A:
[31-143]
------
F
D
N
H
W
--
H
P
A
A
F
D
H
E
L
A
E
G
E
F
V
A
V
T
M
-
L
G
E
K
V
L
L
T
R
A
---
K
G
E
V
K
A
I
A
D
G
C
A
-
H
R
G
V
-
P
F
S
K
E
-
P
L
---
C
FK
A
----
G
----
T
-
V
S
C
W
Y
H
G
W
T
Y
D
L
D
D
G
-
R
L
------
V
D
V
L
TSPGSPVI-
G
------
K
------
I
G
----------
I
K
V
Y
P
V
Q
V
A
-
Q
G
V
V
F
V
F
I
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
85
HHSearch
63.43
25%
-142
- C3 -
1FQT
3
BPHF_BURXL
A:
[4-105]
--------
M
K
F
--
T
R
V
C
D
R
R
D
V
P
E
G
E
A
L
K
V
E
S
-
G
G
T
S
V
A
I
F
N
V
---
D
G
E
L
F
A
T
Q
D
R
C
T
-
H
G
D
W
-
S
L
S
D
G
G
Y
L
---
E
--
G
----
D
----
V
-
V
E
C
S
L
H
M
G
K
F
C
V
R
T
G
-
K
V
------
K
S
P
P
---------
P
------
C
------
E
A
----------
L
K
I
F
P
I
R
I
E
-
D
N
D
V
L
V
D
F
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
90
HHSearch
62.77
26%
-140
- C3 -
2JZA
-
?
A:
[2-107]
--------
S
Q
W
--
T
T
V
C
K
L
D
D
I
L
P
G
T
G
V
C
A
L
V
-
E
Q
Q
Q
I
A
V
F
R
P
-
R
N
D
E
Q
V
Y
A
I
S
N
I
D
P
-
F
A
Q
A
S
V
L
S
R
G
-
I
V
---
A
--
E
HQD
D
L
----
W
-
V
A
S
P
L
K
K
Q
H
F
R
L
Y
D
G
-
F
C
------
L
E
-
D
---------
G
------
A
------
Y
S
----------
V
A
A
Y
D
T
Q
V
T
-
N
G
N
V
Q
I
S
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
97
HHSearch
61.80
23%
-144
- C3 -
3GKQ
1
?
A:
[29-140]
-------
R
N
H
W
--
Y
P
V
R
L
S
A
E
V
A
E
A
S
P
V
P
V
Q
L
-
L
G
E
K
V
L
L
N
R
--
V
-
D
G
V
V
H
A
I
A
D
R
C
L
-
H
R
G
V
-
T
L
S
D
K
-
V
E
C
Y-
S
--
K
----
A
----
T
-
I
S
C
W
Y
H
G
W
T
Y
R
W
D
N
G
-
K
L
------
V
D
I
L
TNPTSVQI-
G
------
R
------
H
A
----------
L
K
T
Y
P
V
R
E
E
-
K
G
L
V
F
L
F
V
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
PsiBlast_PDB
59.68
34%
-168
- C2 -
3D89
2
RFESD_MOUSE
A:
[14-97]
-------
K
Y
T
S
--
V
C
V
G
R
E
E
D
I
R
K
S
E
R
M
T
A
V
V
-
H
D
R
E
V
V
I
F
-
Y
-
H
-
K
G
E
Y
H
A
M
D
I
R
C
Y
-
H
S
G
G
-
P
L
H
L
G
-
E
I
E
D
F
N
--
G
----
Q
----
S
C
I
V
C
P
W
H
K
Y
K
I
T
L
A
T
G
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
103
Fugue
59.62
24%
-146
- C3 -
1FQT
3
BPHF_BURXL
A:
[4-112]
--------
M
K
F
--
T
R
V
C
D
R
R
D
V
P
E
G
E
A
L
K
V
E
S
-
G
G
T
S
V
A
I
F
N
V
---
D
G
E
L
F
A
T
Q
D
R
C
T
-
H
G
D
W
-
S
L
S
D
G
G
Y
L
---
E
--
G
----
D
----
V
-
V
E
C
S
L
H
M
G
K
F
C
V
R
T
G
K
V
K
------
S
P
-
P
---------
P
------
C
------
E
A
----------
L
K
I
F
P
I
R
I
E
-
D
N
D
V
L
V
D
F
E
A
G
Y
L
A
P-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
80
HHSearch
58.94
20%
-136
- C3 -
1VM9
6
TMOC_PSEME
A:
[1-100]
---------
S
F
--
E
K
I
C
S
L
D
D
I
W
V
G
E
M
E
T
F
E
T
S
D
G
T
E
V
L
I
V
N
S
-
E
-
E
H
G
V
K
A
Y
Q
A
M
C
P
-
H
Q
E
I
-
L
L
S
E
G
-
S
Y
---
E
--
G
----
G
----
V
-
I
T
C
R
A
H
L
W
T
F
N
D
G
T
G
-
H
G
------
I
N
-
P
---------
D
------
D
------
A
A
----------
L
A
E
Y
P
V
E
V
K
-
G
D
D
I
Y
V
S
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
82
HHSearch
58.43
24%
-132
- C3 -
3DQY
1
TODB_PSEP1
A:
[1-99]
---------
T
W
--
T
Y
I
L
R
Q
G
D
L
P
P
G
E
M
Q
R
Y
E
G
-
G
P
E
P
V
M
V
C
N
--
V
-
D
G
E
F
F
A
V
Q
D
T
C
T
-
H
G
D
W
-
A
L
S
D
G
-
Y
L
---
D
--
G
----
D
----
I
-
V
E
C
T
L
H
F
G
K
F
C
V
R
T
G
-
K
V
------
K
A
L
P
---------
A
------
C
------
K
P
----------
I
K
V
F
P
I
K
V
E
-
G
D
E
V
H
V
D
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
88
HHSearch
57.97
24%
-131
- C3 -
4AIV
1
?
A:
[6-114]
------
D
I
Q
V
W
--
T
T
A
C
A
Y
D
H
L
I
P
G
R
G
V
G
V
L
L
D
D
G
S
Q
V
A
L
F
R
L
-
D
-
D
G
S
V
H
A
V
G
N
V
D
P
-
F
S
G
A
A
V
M
S
R
G
-
I
V
---
G
--
D
R
GG
R
A
----
M
-
V
Q
S
P
I
L
K
Q
A
F
A
L
D
D
G
-
S
C
------
L
D
-
D
---------
P
------
R
------
V
S
----------
V
P
V
Y
P
A
R
V
T
P
E
G
R
I
Q
V
A
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------