@TOME V2.3
(Nov 2016)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : bsu03400: (2016-06-05 )
MKRITINIITMFIAAAVISLTGTAEAAEKQQQSPANVTLTDQQKKEIEQLEAEILKKRKDVISKYVQYGILPKERGEHIKNHLDKHFEMMKQNGFVPKHHPHPHKFEKRH
Atome Classification :
(20 SA)
--------------------------------------------------.........10..---......20........30........40....---....50.-.....-..60......--..70....---.-...----80-........90--.........100.......110------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
--------------------------------------------------M
K
R
I
T
I
N
I
I
T
M
F
I
---
A
A
A
V
I
SLTG
T
A
E
A
A
E
K
QQQSPAN
V
T
L
T
D
Q
Q
K
K
---
E
I
E
Q
L
E
A
-
E
I
L
K
K
-
R
K
D
V
I
S
K
Y
V
Q
--YGI
L
P
K
E
R
---
G
-
E
H
I
----
K
N
-
H
L
D
K
H
F
E
M
M
---
K
QNGFVPKHHPHPHKFEKRH--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
55
Fugue
68.21
17%
-47
- C3 -
2MQ8
-
?
A:
[1-112]
--------------------------------------------------
M
L
T
V
E
V
E
V
K
I
T
A
D
D
E
N
K
A
E
E
I
V
K
R
V
I
D
E
V
E
R
E
V
Q
K
Q
Y
P
N
A
T
I
T
R
T
L
T
R
---
D
D
G
T
V
E
L
-
R
I
K
V
K
-
A
-
D
T
E
E
K
A
K
S
--
I
I
K
L
I
E
E
R
---
I
-
E
E
E
----
L
R
-
K
R
D
P
N
A
T
I
T
---
R
T
V
R
T
E
V
G
S
S
W
S
L
E
H
H
H
H
H
H
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
47
Fugue
64.68
28%
-126
- C4 -
2BZB
-
?
A:
[1-62]
-------------------------------------------------------------------------------------------------
M
---
E
M
G
Q
L
K
N
-
K
I
E
N
K
-
K
K
E
L
I
Q
L
V
A
R
--
H
G
-
L
D
H
D
K
---
V
-
L
L
F
----
S
R
-
D
L
D
K
L
I
N
K
F
M
NV
K
D
K
V
H
K
L
E
H
H
H
H
H
H
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
21
PsiBlast_CBE
63.45
31%
-46
- C4 -
3PQC
1
ENGB_THEMA
B:
[130-195]
---------------------------------------------------------------------------------
K
S
L
N
I
P
F
T
I
V
L
T
K
M
D
K
V
---
K
M
S
E
-
R
A
-
K
K
L
E
E
-
H
R
K
V
F
S
K
Y
G
E
--
Y
T
I
I
P
T
S
S
VT-
G
-
E
G
I
----
S
E
-
L
L
D
L
I
S
T
L
L
---
K
E
N
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
63.02
31%
-16
- C4 -
3PR1
-
ENGB_THEMA
A:
[130-193]
---------------------------------------------------------------------------------
K
S
L
N
I
P
F
T
I
V
L
T
K
M
D
K
V
---
K
M
S
E
-
R
A
-
K
K
L
E
E
-
H
R
K
V
F
S
K
Y
G
E
--
Y
T
I
I
P
T
S
S
VT-
G
-
E
G
I
----
S
E
-
L
L
D
L
I
S
T
L
L
---
K
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
20
PsiBlast_PDB
59.92
35%
-57
- C4 -
2VKC
-
N4BP2_HUMAN
A:
[1666-1723]
------------------------------------------------------------------------------------------------
M
K
---
E
A
N
H
L
A
A
I
E
I
F
E
K
V
N
A
S
L
L
P
Q
N
V
L
D
L
H
G
L
H
V
D
E
A
---
L
-
E
H
L
----
M
R
-
V
L
E
K
K
T
E
E
F
---
K
Q
N
G
G
K
P
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
PsiBlast_PDB
59.66
31%
-48
- C4 -
2I6J
-
?
A:
[18-68]
----------------------------------------------------------------------------------------------------------
E
N
-
E
I
L
E
W
-
R
K
E
G
V
K
R
V
L
-----
V
L
P
E
D
W
---
E
I
E
E
S
----
W
G
-
D
K
D
Y
Y
L
S
I
L
---
K
K
N
G
L
Q
P
L
H
I
P
I
P
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
PsiBlast_PDB
59.20
31%
-11
- C4 -
2I6P
1
?
A:
[18-68]
----------------------------------------------------------------------------------------------------------
E
N
-
E
I
L
E
W
-
R
K
E
G
V
K
R
V
L
-----
V
L
P
E
D
W
---
E
I
E
E
S
----
W
G
-
D
K
D
Y
Y
L
S
I
L
---
K
K
N
G
L
Q
P
L
H
I
P
I
P
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10
PsiBlast_PDB
59.04
31%
-48
- C4 -
3RO1
1
?
A:
[18-68]
----------------------------------------------------------------------------------------------------------
E
N
-
E
I
L
E
W
-
R
K
E
G
V
K
R
V
L
-----
V
L
P
E
D
W
---
E
I
E
E
S
----
W
G
-
D
K
D
Y
Y
L
S
I
L
---
K
K
N
G
L
Q
P
L
H
I
P
I
P
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
PsiBlast_PDB
59.01
31%
-58
- C4 -
2I6M
-
?
A:
[18-68]
----------------------------------------------------------------------------------------------------------
E
N
-
E
I
L
E
W
-
R
K
E
G
V
K
R
V
L
-----
V
L
P
E
D
W
---
E
I
E
E
S
----
W
G
-
D
K
D
Y
Y
L
S
I
L
---
K
K
N
G
L
Q
P
L
H
I
P
I
P
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
PsiBlast_PDB
58.95
31%
-32
- C4 -
2DXP
-
?
A:
[18-68]
----------------------------------------------------------------------------------------------------------
E
N
-
E
I
L
E
W
-
R
K
E
G
V
K
R
V
L
-----
V
L
P
E
D
W
---
E
I
E
E
S
----
W
G
-
D
K
D
Y
Y
L
S
I
L
---
K
K
N
G
L
Q
P
L
H
I
P
I
P
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
PsiBlast_PDB
58.70
31%
-32
- C4 -
2I6O
1
?
A:
[18-68]
----------------------------------------------------------------------------------------------------------
E
N
-
E
I
L
E
W
-
R
K
E
G
V
K
R
V
L
-----
V
L
P
E
D
W
---
E
I
E
E
S
----
W
G
-
D
K
D
Y
Y
L
S
I
L
---
K
K
N
G
L
Q
P
L
H
I
P
I
P
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
52
Fugue
58.37
23%
-2
- C2 -
4HU8
3
?
A:
[3-452]
N
E
I
T
L
T
IG
Q
Q
K
D
LASMVPAKFAG
Q
E
L
S
W
T
S
SDPET
A
S
V
T
DKG
I
V
T
A
L
K
FS
S
G
G
A
N
L
F
L
K
A
P
A
T
---
G
E
A
I
I
T
V
T
A
------
G
K
Q
S
H
S
V
K
V
I
T
T
V
K
G
K
E
---
D
I
E
K
L
------
P
P
-
L
K
D
H
F
K
D
Y
F
L
--
I
G
N
I
F
N
N
R
DVS
G
-
S
M
M
----
D
N
D
W
L
A
H
H
Y
A
--------
I
L
T
P
E
N
H
M
K
P
S
N
L
T
N
N
R
NETTG
E
I
T
Y
TF
S
T
A
D
R
M
V
N
A
A
I
A
E
G
L
K
I
H
G
H
T
LLWHQQIP
P
W
Q
R
S
MESAA
K
D
A
A
L
S
V
M
K
K
Y
I
T
E
V
M
T
H
Y
KGKIYSWDVLNEIFPDGRGDNWTTAMRPEN
P
W
F
K
S
IGSD
F
V
Y
E
A
Y
L
A
A
R
Q
A
DPN
A
I
L
Y
Y
N
D
Y
NMDQ
A
G
K
A
A
L
I
A
A
M
V
R
D
V
N
A
K
Y
K
Q
A
YPRETRLLIE
G
I
G
MQSHHNMDVP
A
S
N
I
R
N
T
I
N
R
Y
R
E
L
G
V
K
I
S
VS
E
L
D
I
L
CMG
W
S
A
F
R
G
S
TGQGADKDDMTIAT
N
R
N
I
L
D
Q
A
Y
K
F
N
E
Y
M
K
L
Y
L
E
N
SDIIE
R
V
S
M
WGVSDRYSWRSGGLPLLFDADN
K
A
K
P
A
Y
Y
S
F
V
R
A
R
E
D
Y
E
A
A
K
A
7
PsiBlast_PDB
57.04
31%
-47
- C4 -
2I6I
-
?
A:
[18-68]
----------------------------------------------------------------------------------------------------------
E
N
-
E
I
L
E
W
-
R
K
E
G
V
K
R
V
L
-----
V
L
P
E
D
W
---
E
I
E
E
S
----
W
G
-
D
K
D
Y
Y
L
S
I
L
---
K
K
N
G
L
Q
P
L
H
I
P
I
P
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
55.75
31%
-28
- C4 -
3PQC
1
ENGB_THEMA
A:
[130-193]
---------------------------------------------------------------------------------
K
S
L
N
I
P
F
T
I
V
L
T
K
M
D
K
V
---
K
M
S
E
-
R
A
-
K
K
L
E
E
-
H
R
K
V
F
S
K
Y
G
E
--
Y
T
I
I
P
T
S
S
VT-
G
-
E
G
I
----
S
E
-
L
L
D
L
I
S
T
L
L
---
K
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
17
PsiBlast_PDB
55.62
23%
47
- C4 -
1TK6
2
DPS_HALSA
A:
[81-151]
--------------------------------------------------------------
L
---
A
E
R
V
Q
A
L
G
G
V
P
H
A
S
P
E
T
L
Q
A
E
A
S
V
D
V
E
D
E
D
V
Y
---
D
I
R
T
S
L
A
-
N
D
M
A
I
-
Y
G
D
I
I
E
A
T
R
E
--
H
T
E
L
A
E
N
L
---
G
-
D
H
A
----
T
A
-
H
M
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
19
PsiBlast_PDB
55.00
23%
45
- C4 -
1TKP
3
DPS_HALSA
A:
[81-151]
--------------------------------------------------------------
L
---
A
E
R
V
Q
A
L
G
G
V
P
H
A
S
P
E
T
L
Q
A
E
A
S
V
D
V
E
D
E
D
V
Y
---
D
I
R
T
S
L
A
-
N
D
M
A
I
-
Y
G
D
I
I
E
A
T
R
E
--
H
T
E
L
A
E
N
L
---
G
-
D
H
A
----
T
A
-
H
M
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
16
PsiBlast_PDB
54.41
23%
38
- C4 -
1TJO
2
DPS_HALSA
A:
[81-151]
--------------------------------------------------------------
L
---
A
E
R
V
Q
A
L
G
G
V
P
H
A
S
P
E
T
L
Q
A
E
A
S
V
D
V
E
D
E
D
V
Y
---
D
I
R
T
S
L
A
-
N
D
M
A
I
-
Y
G
D
I
I
E
A
T
R
E
--
H
T
E
L
A
E
N
L
---
G
-
D
H
A
----
T
A
-
H
M
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
18
PsiBlast_PDB
54.13
23%
46
- C4 -
1TKO
3
DPS_HALSA
A:
[81-151]
--------------------------------------------------------------
L
---
A
E
R
V
Q
A
L
G
G
V
P
H
A
S
P
E
T
L
Q
A
E
A
S
V
D
V
E
D
E
D
V
Y
---
D
I
R
T
S
L
A
-
N
D
M
A
I
-
Y
G
D
I
I
E
A
T
R
E
--
H
T
E
L
A
E
N
L
---
G
-
D
H
A
----
T
A
-
H
M
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
15
PsiBlast_PDB
52.73
23%
52
- C4 -
1MOJ
1
DPS_HALSA
A:
[81-151]
--------------------------------------------------------------
L
---
A
E
R
V
Q
A
L
G
G
V
P
H
A
S
P
E
T
L
Q
A
E
A
S
V
D
V
E
D
E
D
V
Y
---
D
I
R
T
S
L
A
-
N
D
M
A
I
-
Y
G
D
I
I
E
A
T
R
E
--
H
T
E
L
A
E
N
L
---
G
-
D
H
A
----
T
A
-
H
M
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
44
HHSearch
50.19
13%
-75
- C4 -
2CUJ
-
A:
[37-106]
---------------------------------------------------------------------------------------
G
T
E
K
L
N
E
K
E
K
E
L
C
Q
V
V
R
L
V
P
G
-
A
Y
L
E
Y
-
K
S
A
L
L
N
E
C
H
K
--
Q
G
G
L
R
L
A
Q
---
A
-
R
A
L
I
KID
V
N
-
K
T
R
K
I
Y
D
F
L
---
I
R
E
G
Y
I
T
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------