@TOME V2.3
(Nov 2016)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : bsu03580: (2016-06-06 )
MKQELVLRWTFYFAGLIILAFGVSLTIEGKALGISPWDAFHYSLFQHFGLTVGQWSIIIGALIVGFTSLFTRAWPKIGALLNMVLIGVFIDFFNFILPALSTYTGSIIVFSLGVVLIGYGVGVYVSAGLGAGPRDSLMMLITEKTGWNVQWVRNGMELTILFAAWGMGGPIGFGTILTAILTGLILRFSLPQSIQLLNYAVARRTAAVKASPPVH
Atome Classification :
(20 SA)
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------.......-----..10-...----....-------.20......-..-30........40.......------------------.50--........-.60.-......---.70...-----..-..-----------.80--......----..90..--.--.....----100.......110-....-----...--------120.........130.-...-----...140-.......150.----......160.-----------------------------.....-.170.....-------..180..------------....-----.190.......200.......210...---------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MK
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-EG-
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LGIS
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F------------------GL---TV
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TYT
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-
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GY--------G--
V
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SAGLGAGP-RD
S
-----
L
M
M
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I
T-EKTGW
N
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VR----NG
M
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-----------------------------AWGMG-GPI
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------------
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RF-----SLP
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N
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A
AVKASPPVH---------------------------------------------------
19
Fugue
74.34
14%
-198
- C5 -
2VDW
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MCES_VACCW
B:
[1-287]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------M
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IMLPES
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STENNLYISDY
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LL-----------------------------------------
15
Fugue
66.03
18%
-165
- C4 -
4U1D
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EIF3A_YEAST
A:
[6-493]
FR
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-----------------------------
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VSQSE
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AW
D
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LQAAVEDYVSITIDHESAKVTFAK
18
Fugue
58.01
16%
-166
* C5 *
4RFS
-
?
S:
[3-200]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
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------------------
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F
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Q
-----------------------------
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---
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Q
-------------------------------------------------------
12
Fugue
57.45
17%
-172
- C4 -
1QCZ
-
PURE_ECOLI
A:
[7-168]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
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GSKS
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------------------------------------------------------------
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P
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G
A--------------------------------------------------
13
Fugue
49.21
17%
-158
- C4 -
2VY1
1
A:
[7-168]
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R
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T
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------------------------------------------------------
20
Fugue
48.28
16%
-91
- C3 -
2XQH
4
?
A:
[23-280]
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TESDK
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SDGKLTRAEGA
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RT-------------------------------
11
Fugue
47.16
10%
-177
- C4 -
1SLQ
-
VP4_ROTRH
A:
[253-522]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------DI
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AANPNNGKE
Y
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SNDDYQ
T
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G
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L
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LAL------------------------------------------------
16
Fugue
41.78
12%
-168
- C4 -
1MOL
-
MONB_DIOCU
A:
[1-94]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
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--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
HHSearch
36.05
36%
-364
- C6 -
2LK9
-
BST2_HUMAN
A:
[22-43]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
L
-----
L
G
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I
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L
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I
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
HHSearch
28.83
14%
-249
- C6 -
4B19
-
?
A:
[6-27]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
H
I
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F
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Y
W
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R
R
----------------------------------------------------------------------
6
HHSearch
26.02
43%
80
- C2 -
2LW6
-
?
A:
[56-69]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
R
L
V
A
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K
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A
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P
V
H
---------------------------------------------------
5
HHSearch
24.72
18%
-24
- C1 -
2BN8
-
CEDA_ECOLI
A:
[21-33]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
Y
V
P
R
T
E
P
A
P
P
E
H
---------------------------------------------------
8
HHSearch
24.71
36%
-148
- C6 -
4LFL
1
?
B:
[58-82]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
D
L
-
G
I
V
M
-----
C
G
T
--------
G
--
I
G
I
S
T
A
A
D
K
N
E
G
I
-
R
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
HHSearch
22.49
29%
-186
- C6 -
3HE8
1
?
A:
[58-81]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
C
D
R
-
G
I
V
I
-----
C
G
T
--------
G
--
L
G
I
S
I
A
A
N
K
V
P
G
I
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
HHSearch
22.38
36%
-132
- C6 -
2VVR
-
RPIB_ECOLI
A:
[59-83]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
D
G
-
G
I
L
I
-----
C
G
T
--------
G
--
V
G
I
S
I
A
A
N
K
F
A
G
I
-
R
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
17
Fugue
20.55
16%
-31
* C4 *
1Y32
-
HUNIN_HUMAN
A:
[1-24]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
A
P
R
G
F
S
C
L
L
L
L
T
S
E
I
D
L
P
V
K
R
R
A
------------------------------------------------------
3
HHSearch
18.67
17%
5
- C6 -
1JEI
-
EMD_HUMAN
A:
[22-50]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
H
G
P
------------
V
V
G
S
-----
T
R
R
L
Y
E
K
K
I
F
E
Y
E
T
Q
R
R
---
R
L
S
P
P
-----------------------------------------------------
1
HHSearch
17.20
15%
-78
- C6 -
2KV5
-
?
A:
[6-31]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
L
V
I
-------
A
P
I
F
V
G
L
------------
V
L
E
M
-----
I
S
R
V
L
D
E
E
D
D
S
-------------------------------------------------------------------
14
Fugue
16.97
16%
98
- C4 -
3T1E
-
HN_NDVA
E:
[79-115]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
V
V
D
R
I
------------
Y
K
Q
V
-----
A
L
E
S
P
L
A
L
L
N
T
E
S
I
I
M
N
A
I
T
S
L
S
Y
Q
I
N
---------------------------------------------------
10
HHSearch
16.84
30%
-102
* C6 *
4EM8
-
?
A:
[59-85]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
S
F
-
G
V
L
I
-----
C
G
T
--------
G
--
I
G
M
S
I
A
A
N
R
H
K
N
I
-
R
A
A
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------