@TOME V2.3
(Nov 2016)
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : bsu03700: (2016-06-06 )
MPLFSKRKNNTDSKDKQNTDERNQEQQQEKERPVLISPSLAKNIAETKKEVGSSSDVIIREIKIGEQDHVHLAVIYISGLVDNNTIHESLIDPLVQDESIQNTHAIQQILEKTLPLGGVKAEKSWDKLFSELMLGNALIFADGHDEALICSTQGGEQRSIQEPSTQVSFRGPRQGFTESLQTNISMIRRYIKNPNLWVEKMKKGSVTNTDIALMYIQGICDEKVLKEVKQRLEKIDIDSILESGYIEQLIEDETFTTFPTMYHTERPDVVAGNLLEGRFAIIVDGTPFVLIAPALFVQFFQSVEDYYSRFDIATSIRILRVLVFFISLVAPAVYVAATTFHQEMIPTQLLVVIAAQREIVPFPAVVEALTMEVAFEILREAGVRLPRVVGSAVSIVGALVIGQAAVQAGIVSPAMVIIVALTAIASFATPAFAMAISARLIRFIFIIASAVMGFYGLILGIIMMFVHLCSLRSFGVPYMSPLAPFSSQGVKDALFRVPWWADEKRPESVSKEDKVRQGKDQRPEPAASRGMVNKDLEEGDQNGT
Atome Classification :
(20 SA)
-------.........10........20..-----......30.....-----...40........50......-----------..60........70......--------------------------..80........90......--..100.......110.......120...------....130.......140--........150.......160.......170.......180.......190.......200.------......210.......220--........230.......240.........250.......260.......270.......280.......----290.......300.......310..------.....320....---...330.......340.......350.......360.......370.......380.......390.--......400--...--....410----------.........420.......430.....--..440.......450.......460.......470.......480.......490..----.....500.......510......---------.520.......530.......540..
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
-------MPLFSKRKNNTDSKDKQNTDE
R
N
-----
Q
E
Q
Q
Q
E
KER
P
V
L
I-----
S
P
S
L
A
K
N
I
A
E
T
K
K
EVGSSS
D
V
-----------
I
I
R
E
I
KIGEQD
H
V
H
L
A
V
I
Y
I
--------------------------SGLVDN
N
T
I
H
E
S
L
I
D
P
L
VQD--ESIQ
N
T
H
A
I
Q
Q
I
L
E
KTLPLGGVKA
E
K
S
W
------
D
K
L
F
S
E
L
MLG
N
A
L
I
F
A---DGHD
E
A
L
I
C
STQGGEQRSIQEPST
Q
V
S
FRGPRQG
F
T
E
S
L
Q
T
N
I
S
M
I
R
R
Y
IKNP
N
L
W
V
E
K
MKK------GSVTNT
D
I
A
L
M
Y
I
Q
GIC
D
---
E
K
V
L
K
E
V
K
Q
R
L
E
KI
D
I
D
S
I
--
L
E
S
G
Y
I
E
Q
L
IEDETFTTFPTMYHTERPDVVAGNLLE
G
R
F
A
I
I
VDGT
P
F
V
----
L
I
A
P
A
L
F
V
Q
F
F
Q
S
V
E
D
Y
Y
S
RF
D
I
A
T
------
S
I
R
I
L
R
V
L
V
F
F
I
---
S
L
V
A
P
A
V
Y
V
A
A
T
T
F
H
Q
EM
I
P
T
Q
L
L
V
V
I
AAQREIV
P
F
P
A
V
V
E
A
L
T
M
E
V
A
F
E
I
L
R
E
AGVR
L
P
R
V
V
G
S
A
V
--
S
I
V
G
A
L
V
I
G
--
Q
A
A
--
V
QAGI------------V
S
P
A
M
V
I
I
V
A
L
T
A
I
A
S
FA
T
P
A
F
A
M
A
I
S
--
A
R
L
I
R
F
I
F
I
I
A
S
A
V
M
G
F
Y
G
L
I
L
G
I
I
M
M
F
V
H
L
C
S
L
R
SFGVPYMSPLAPFSSQ
G
V
K
D
A
L
----FRVPWWADEKRPESV
S
K
E
D
K
V
RQG---------KDQRPEPAASRGMVNK
D
L
EEGDQNGT
20
Fugue
59.55
13%
-93
- C1 -
4WIS
2
?
A:
[19-719]
GVDFVIH
Y
K
V
P
A
A
E
R
D
E
A
E
A
G
F
V
Q
L
I
R
A
L
T
T
V
G
L
A
T
E
V
R
H
G
E
N
E
S
L
L
V
F
V
K
V
A
S
P
D
L
F
A
K
Q
V
Y
R
A
R
L
G
D
W
L
H
G
V
RVSAPHNDIAQ
A
L
Q
D
E
P
V
V
E
A
E
R
L
R
L
I
Y
L
M
I
T
KPHNEWKHVE
S
I
F
P
L
H
S
H
S
F
N
K
E
W
I
K
K
W
S
S
K
Y
T
L
E
Q
T
D
I
D
N
I
R
D
K
FG
E
S
V
A
F
Y
F
A
F
L
R
S
Y
F
R
F
L
V
I
P
S
A
F
G
F
G
A
W
L
LLGQF
S
Y
L
Y
A
L
L
C
G
L
W
S
V
V
F
F
E
Y
W
K
K
Q
E
V
D
L
A
V
Q
W
G
V
R
G
V
S
S
I
Q
Q
S
R
P
E
F
E
W
E
H
E
A
E
D
P
I
T
G
E
P
V
K
V
Y
P
P
M
K
R
V
K
T
Q
L
L
Q
I
P
F
A
L
A
C
V
V
A
L
G
A
L
I
V
T
C
N
S
L
E
V
F
I
N
E
V
Y
S
GPG
K
Q
Y
L
G
F
L
P
T
I
F
L
V
I
G
T
P
T
I
S
G
V
L
M
G
A
A
E
K
L
N
A
M
E
N
Y
A
T
V
D
A
H
D
A
A
L
I
Q
K
Q
F
V
L
N
F
M
T
S
Y
M
A
L
F
F
T
A
F
V
Y
I
PFGH
I
L
H
P
F
L
N
F
W
R
A
T
A
Q
T
L
T
F
S
E
K
E
L
P
T
REFQIN
P
A
R
I
S
N
Q
M
F
Y
F
T
V
T
A
Q
I
V
N
F
A
T
E
V
V
V
P
Y
I
K
Q
Q
A
F
Q
A
E
F
L
Q
R
V
R
E
E
C
T
L
E
E
Y
D
V
S
G
D
Y
R
E
M
V
M
Q
F
G
Y
V
A
M
F
S
V
A
W
P
-
L
A
A
C
C
F
--
L
V
N
N
W
V
E
L
R
--
S
D
A
--
L
K
I
A
I
SSRRPI
P
W
R
T
DS
I
G
P
W
L
T
A
L
S
F
L
S
W
L
G
S
I
T
S
S
A
I
V
Y
L
C
S
NA
S
P
L
K
A
W
G
L
L
L
S
I
L
F
A
E
H
F
Y
L
V
V
Q
L
A
V
R
F
V
L
S
K
L
D
S
P
G
L
Q
K
E
R
K
E
R
F
Q
T
K
K
R
L
L
Q
E
N
L
GQDA
A
A
A
P
G
I
E
H
S
E
K
I
T
R
E
A
L
E
E
E
A
R
Q
A
S
IEMFWQRQ
R
G
M
Q
E
T
I
E
I
G
R
R
M
I
E
Q
Q
L
A
A
G
-----
5
PsiBlast_PDB
52.11
27%
-147
- C2 -
4BBJ
-
?
A:
[301-393]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
F
V
M
K
A
L
H
V
G
S
D
T
----
M
L
A
R
I
V
Q
M
V
S
D
A
Q
R
S
R
A
P
I
Q
R
L
A
D
T
V
S
-----------
G
W
F
V
P
A
V
I
L
V
A
V
L
S
F
I
V
W
A
L
L
G
P
--
Q
P
A
--
L
S
Y
G
L
------------
I
A
A
V
S
V
L
I
I
A
C
P
C
A
L
G
L
A
T
P
M
S
I
M
-----------------------------------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
51.17
27%
-172
- C2 -
3RFU
-
?
A:
[301-395]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
F
V
M
K
A
L
H
V
G
S
D
T
----
M
L
A
R
I
V
Q
M
V
S
D
A
Q
R
S
R
A
P
I
Q
R
L
A
D
T
V
S
-----------
G
W
F
V
P
A
V
I
L
V
A
V
L
S
F
I
V
W
A
L
L
G
P
--
Q
P
A
--
L
S
Y
G
L
------------
I
A
A
V
S
V
L
I
I
A
C
P
C
A
L
G
L
A
T
P
M
S
I
M
-----------------------------------------------------------------------------------------------------------------------------
4
PsiBlast_PDB
50.87
27%
-148
- C2 -
4BYG
-
?
A:
[301-395]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
F
V
M
K
A
L
H
V
G
S
D
T
----
M
L
A
R
I
V
Q
M
V
S
D
A
Q
R
S
R
A
P
I
Q
R
L
A
D
T
V
S
-----------
G
W
F
V
P
A
V
I
L
V
A
V
L
S
F
I
V
W
A
L
L
G
P
--
Q
P
A
--
L
S
Y
G
L
------------
I
A
A
V
S
V
L
I
I
A
C
P
C
A
L
G
L
A
T
P
M
S
I
M
-----------------------------------------------------------------------------------------------------------------------------
3
PsiBlast_PDB
49.07
27%
-148
- C2 -
4BEV
-
?
A:
[301-395]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
F
V
M
K
A
L
H
V
G
S
D
T
----
M
L
A
R
I
V
Q
M
V
S
D
A
Q
R
S
R
A
P
I
Q
R
L
A
D
T
V
S
-----------
G
W
F
V
P
A
V
I
L
V
A
V
L
S
F
I
V
W
A
L
L
G
P
--
Q
P
A
--
L
S
Y
G
L
------------
I
A
A
V
S
V
L
I
I
A
C
P
C
A
L
G
L
A
T
P
M
S
I
M
-----------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
40.89
30%
-233
- C2 -
4O8M
1
?
A:
[239-293]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
F
V
A
G
T
A
F
W
N
N
L
T
P
E
Q
Q
K
I
I
V
D
A
S
R
E
M
V
T
Y
G
G
G
L
I
E
Q
A
E
N
E
A
L
E
N
L
K
K
A
G
V
T
V
N
D
V
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
HHSearch
40.63
24%
-215
- C2 -
4EZC
1
UT1_BOVIN
A:
[256-282]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
I
G
S
L
L
--
G
I
I
A
G
L
S
L
S
AP
F
E
D
--
I
Y
A
G
L
------------
W
G
---------------------------------------------------------------------------------------------------------------------------------------------------
22
Fugue
39.17
12%
23
- C2 -
3HE5
-
?
A:
[0-46]
------------
S
N
L
V
A
Q
L
E
N
E
V
A
S
L
E
N
E
N
-----
E
T
L
K
K
K
N
L
H
K
K
D
L
-----
I
A
Y
L
E
K
E
I
A
N
L
R
K
K
I
E
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10
HHSearch
37.28
27%
-196
- C2 -
4O93
-
?
A:
[42-84]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
H
G
V
--
V
V
V
G
A
M
V
V
L
--
G
H
A
ET
G
L
E
K
L
------------
I
G
F
L
G
V
I
L
G
A
A
N
A
A
G
G
Y
A
V
T
V
--------------------------------------------------------------------------------------------------------------------------------
12
HHSearch
37.15
41%
-266
- C2 -
2KJF
-
CCLA_CARML
A:
[23-39]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
V
G
S
I
I
--
S
I
L
G
G
V
T
V
G
--
L
S
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------
21
Fugue
36.22
13%
144
- C2 -
3A1Q
-
UIMC1_MOUSE
C:
[76-120]
--------
G
P
L
G
S
E
E
E
Q
F
A
L
A
L
K
M
S
E
Q
E
A
R
-----
E
V
N
N
Q
E
E
K
E
E
E
L
L
-----
R
K
A
I
A
E
S
L
N
S
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
19
Fugue
35.07
17%
169
- C2 -
1ETF
-
REV_HV1W2
B:
[1-23]
-----------------
D
T
R
Q
A
R
R
N
R
R
R
R
W
-----
R
E
R
Q
R
A
A
A
A
R
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
23
Fugue
33.29
20%
252
* C2 *
2DOH
-
C:
[4-28]
---------------
L
T
A
D
A
E
L
Q
R
L
K
N
E
R
H
-----
E
E
A
E
L
E
R
L
S
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
13
HHSearch
32.92
22%
-179
- C2 -
2HAC
-
CD3Z_HUMAN
A:
[4-21]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
L
D
G
I
L
F
I
Y
G
V
I
L
T
A
L
F
L
---------------------------------------------------------------------------------------------
24
Fugue
31.90
23%
325
- C2 -
1I5K
-
D:
[402-427]
-------------
E
K
L
T
A
D
A
E
L
Q
R
L
K
N
E
R
H
-----
E
E
A
E
L
E
R
L
K
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
HHSearch
31.38
17%
-324
- C2 -
1Z65
-
PRND_MOUSE
A:
[5-28]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
G
T
W
W
V
A
I
L
C
M
L
L
A
S
H
L
S
T
V
K
A
R
G
----------------------------------------------------------------------------------
25
Fugue
30.67
23%
325
- C2 -
1I5K
-
PAM_STRPY
C:
[302-327]
-------------
E
K
L
T
A
D
A
E
L
Q
R
L
K
N
E
R
H
-----
E
E
A
E
L
E
R
L
K
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
15
HHSearch
30.29
16%
-190
- C2 -
2XND
-
AT5G1_BOVIN
J:
[27-71]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
F
G
S
L
I
I
G
Y
A
R
-
N
P
S
L
K
Q
Q
--
L
F
S
Y
A
I
L
G
F
A
L
S
E
A
M
G
L
F
C
L
M
V
A
F
L
I
L
---------------------------------------------------------------------------------------------
16
Fugue
30.15
32%
-144
- C2 -
1LOI
1
?
?:
[1-25]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
P
L
V
D
F
F
C
E
T
C
S
K
P
-----
W
L
V
G
W
W
D
Q
F
K
R
------------------------------------------------
11
HHSearch
30.08
25%
-213
- C2 -
2M1J
-
PRND_SHEEP
A:
[5-28]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
G
G
C
W
L
A
I
V
C
V
L
L
F
S
Q
L
S
S
V
K
A
R
G
----------------------------------------------------------------------------------