@TOME V2.3
(Nov 2016)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : bsu03940: (2016-06-06 )
MLKKIALTLCPAIVGSLLFFTAPASAHVSVKPAESAAGSWETYTMKVPSEKNLPTTKVVLKMPKDVEFQQYEPIPGWKVSTQKHDDKSVSVTWEATDGGIQEGQFQQFTFVAKNPDKAEEAAWDAYQYYKDGSIVEWTGDEDADTPHSITNITSAKQVTDEHGATKTEDDSENSGSSALDITAMVLSAAAIILSVAALVKKKRA
Atome Classification :
(20 SA)
-----------.........10........20..-.---------.....30...-------------.....---.40........50----------.-----------.-..-....60...-...-------..70-..---------.--......---80....---------------...---------.90.----..---...------.--.100-........-----------------110.....--...120.......130....-----...140.......150......-.160.......170-.......180----......-.190.......200...--------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
-----------ML
K
K
I
A
L
T
L
C
P
A
I
V
G
S
L
L
F
FTAP-A---------S
A
H
V
S
V
-KPA-------------ESAAG---S
W
E
T
Y
T
M
KVPSEK----------N-----------L-PT-T
K
V
V
L
KMPK-DVE-------FQQ--YE---------P--IPG
W
K
V---STQKHD---------------DK
S
---------
V
S
V
T
----
W
E---ATD------G--GIQ--EG
Q
F
Q
Q
F
T
-----------------
F
V
-AKNP
D
--
K
A
E
E
A
A
W
D
A
Y
QYYKDG
S
I
V
E
-----WTGDEDADTPHSITNIT
S
A
K
Q
V
-
T
D
EHGATKTEDDSE-NSGSS
A
L
D
I
T
----
A
M
V
L
S
A
-
A
A
I
I
L
S
V
A
A
L
V
K
K-KRA--------------------------------------------
1
PsiBlast_PDB
68.02
34%
-44
- C8 -
3ESM
2
?
A:
[2-113]
---------------------------------------------
S
L
H
V
T
A
-
D
A
P
-------------
G
A
A
Q
G
---
G
Y
S
V
V
T
F
R
V
P
T
E
S
----------
E
-----------
T
-
A
A
-
T
T
A
M
T
V
T
L
P
-
N
V
R
-------
S
A
R
--
T
E
---------
P
--
M
P
G
W
T
A
---
R
V
D
R
N
D
K--------------
S
E
A
---------
V
S
V
T
----
W
T
---
A
D
P
------
G
NP
G
V
Q
--
P
G
Q
F
Q
R
F
V
-----------------
V
S
-
I
G
P
L
P
--
S
A
E
T
V
S
F
P
A
E
Q
T
Y
S
D
G
R
V
V
A
-----
W
-----------------------------------------------------------------------------------------------------------------------
28
Fugue
62.99
17%
-54
- C5 -
4EI0
1
?
A:
[12-311]
----PVS
A
L
S
N
D
C
I
K
R
S
L
P
V
A
P
N
I
V
G
N
E
I
E
F
A
Y
A
M
A
I
PNEL
G
K
L
S
S
A
Q
V
V
S
-
S
I
A
GATGTYFDP
N
S
Y
Y
T
N
S
S
G
---
Q
D
I
P
V
K
V
C
S
D
S
Q
T
----------
N
-----------
G
-
T
T
-
T
V
I
D
F
T
V
D
T
C
A
A
T
-------
L
R
Y
--
Y
Y
---------
I
--
I
P
-------
E
E
A
R
G
K
---------------
D
V
Q
---------
F
S
F
S
----
V
K
---
A
S
N
------
G
--
Q
V
A
--
E
Y
K
L
G
P
Y
K
I
S
K
M
D
M
A
K
N
L
S
V
T
NDKC
Y
L
-
S
F
L
N
E
--
G
E
A
V
H
I
Y
S
K
A
D
L
Q
A
N
P
S
L
A
A
KID
I
M
Y
A
Y
S
E
K
S
D
L
S
H
A
F
Y
T
S
S
S
P
K
E
Y
M
G
G
T
E
L
P
S
G
F
V
N
N
T
K
M
I
K
V
Y
G
L
Q
D
R
Q
----
L
S
D
L
Q
Y
-
S
K
F
I
D
D
L
D
F
E
T
I
D
M
S
K
C
TNYILGLKEE
A
G
A
W
V
E
T
ADGK
Y
R
A
Y
V
Y
I
NKASAS
E
V
T
V
S
V
K
R
Y
K
35
Fugue
58.50
19%
-96
- C7 -
1AA7
-
M1_I34A1
A:
[1-158]
---------MS
L
L
T
E
V
E
T
Y
V
L
S
I
I
P
S
G
------
P
-
L
---------
K
A
E
I
A
Q
-
R
L
E
-------------
D
V
F
A
G
KNT
D
L
E
V
L
M
E
W
L
K
T
R
P
----------
I
-----------
L
S
P
L
-
T
K
G
I
L
G
F
V
F
-
T
L
T
--------------------------
V
P
------------------------------------------------------
S
E
------
R
--
G
L
Q
--
R
R
R
F
V
Q
N
A
-----------------
L
N
-
G
N
G
D
P
--
N
N
M
D
K
A
V
K
L
Y
R
K
L
K
R
E
----------------------
I
T
F
H
G
A
K
E
I
-
S
L
S
Y
--------
S
A
-
G
A
L
A
S
C
M
G
L
I
Y
N
RM
G
A
V
T
T
E
-
V
A
F
G
L
V
C
A
T
C
E
Q
I
-
A
D
S
Q-------------------------------------------
23
HHSearch
57.48
14%
-100
- C8 -
1CI3
3
CYF_PHOLA
M:
[31-150]
------------------------------------------------
A
E
I
E
V
P
Q
-------------
A
V
L
P
D
---
S
V
F
K
A
V
V
K
I
P
Y
D
H
----------
S
VQQVQADGSKG
P
-
L
N
-
V
G
A
V
L
M
L
P
E
-
G
F
T
-------
I
A
--------------
P
--
E
D
R
I
P
E
---
E
M
K
E
E
------------------
V
---------
G
P
S
Y
LFQP
Y
A
---
D
D
K
QNIVLV
G
--
P
L
P
--
G
D
E
Y
E
E
I
V
-----------------
F
P
-
V
L
S
P
N
PA
T
N
K
S
V
A
F
G
K
Y
S
I
H
------------------------------------------------------------------------------------------------------------------------------------
20
HHSearch
54.61
16%
-83
- C8 -
1E2W
1
CYF_CHLRE
A:
[31-152]
------------------------------------------------
V
E
I
E
V
P
Q
-------------
A
V
L
P
D
---
T
V
F
E
A
V
I
E
L
P
Y
D
K
----------
Q
V
K
Q
V
L
ANG
K
K
G
D
-
L
N
-
V
G
M
V
L
I
L
P
E
-
G
F
E
-------
L
A
--------------
P
--
P
D
R
V
P
A
---
E
I
K
E
K
------------------
V
---------
G
N
L
Y
----
Y
Q
P
YS
P
E
Q
KN
I
L
V
V
G
--
P
V
P
--
G
K
K
Y
S
E
M
V
-----------------
V
P
-
I
L
S
P
D
PA
K
N
K
N
V
S
Y
L
K
Y
P
I
Y
F
G
G
---------------------------------------------------------------------------------------------------------------------------------
22
HHSearch
52.73
15%
-118
- C8 -
1HCZ
1
CYF_BRARR
A:
[31-150]
------------------------------------------------
V
D
I
E
V
P
Q
-------------
A
V
L
P
D
---
T
V
F
E
A
V
V
K
I
P
Y
D
M
----------
Q
LKQVLANG
K
K
G
A
-
L
N
-
V
G
A
V
L
I
L
P
E
-
G
F
E
-------
L
A
P
----------------
P
D
R
I
S
P
---
E
M
K
E
K
------------------
I
---------
G
N
L
S
----
F
Q
N
YR
P
N
K
KN
I
L
V
I
G
--
P
V
P
--
G
Q
K
Y
S
E
I
T
-----------------
F
P
-
I
L
A
P
D
PA
T
N
K
D
V
H
F
L
K
Y
P
I
Y
V
-----------------------------------------------------------------------------------------------------------------------------------
26
HHSearch
51.33
14%
-84
- C8 -
4OGQ
2
CYF_NOSS1
C:
[80-201]
----------------------------------------------------
V
P
Q
-------------
S
V
L
P
D
---
T
V
F
K
A
V
V
K
I
P
Y
D
T
S
V
Q
Q
V
G
ADG
S
K
V
----------
G
-
L
N
-
V
G
A
V
L
M
L
P
E
-
G
F
K
-------
I
A
P
----------------
E
D
R
I
P
E
---
E
L
K
E
E
------------------
I
---------
G
D
V
Y
----
F
Q
P
YG
E
D
K
DN
I
V
I
V
G
--
P
L
P
--
G
E
Q
Y
Q
E
I
V
-----------------
F
P
-
V
L
S
P
N
PA
N
D
K
N
I
H
F
G
K
Y
S
V
-------------------------------------------------------------------------------------------------------------------------------------
33
Fugue
51.27
19%
-48
- C7 -
3RPF
3
MOAE_HELPY
A:
[3-147]
------------------
A
V
L
K
I
I
Q
G
A
L
D
--
T
R
E
-
L
---------
L
K
A
Y
Q
E
-
E
A
C
-------------
A
K
N
F
G
---
A
F
C
V
F
V
G
I
V
R
K
E
D
----------
N
-----------
I
------------
Q
-
G
L
S
-------
F
D
I
--
Y
E
---------
A
--
L
L
K
T
W
F
---
E
K
W
H
H
K
---------------
A
K
D
---------
L
G
V
V
----
L
K
M
--
A
H
S
L
-----
G
--
D
V
L
--
I
G
Q
S
S
F
L
C
-----------------
V
S
M
G
K
N
R
K
--
N
A
L
E
L
Y
E
N
F
I
E
D
F
K
H
N
A
P
-
I
-----
W
K
Y
D
L
I
H
N
K
R
I
Y
A
K
E
R
S
H
P
L
K
-------------------
G
S
G
L
L
---------------------------------------------------------------------------
25
HHSearch
51.14
15%
-86
- C8 -
1Q90
2
CYF_CHLRE
A:
[31-149]
------------------------------------------------
V
E
I
E
V
P
Q
-------------
A
V
L
P
D
---
T
V
F
E
A
V
I
E
L
P
Y
D
K
QVKQVLANG
K
K
G
----------
D
-
L
N
-
V
G
M
V
L
I
L
P
E
-
G
F
E
-------
L
A
P
----------------
P
D
R
V
P
A
---
E
I
K
E
K
V
---------------
G
N
L
Y
Y
Q
P
YSPEQ
K
N
I
L
----
V
V
------------
G
--
P
V
P
--
G
K
K
Y
S
E
M
V
-----------------
V
P
-
I
L
S
P
D
PA
K
N
K
N
V
S
Y
L
K
Y
P
I
Y
------------------------------------------------------------------------------------------------------------------------------------
29
Fugue
50.29
11%
-70
* C8 *
2XDH
4
?
A:
[1-163]
-----------------------------------
A
---------
K
T
T
I
I
A
-
G
S
A
-------------
E
A
P
Q
G
---
S
D
I
Q
V
P
V
K
I
E
N
A
D
----------
K
-----------
V
-
G
S
-
I
N
L
I
L
S
Y
P
N
-
V
L
E
-------
V
E
D
--
V
L
---------
Q
G
S
L
T
Q
N
S
L
---
F
D
Y
Q
V
E
---------------
G
N
Q
---------
I
K
V
G
----
I
A
---
D
S
N
------
G
--
I
S
G
--
D
G
S
L
F
Y
V
K
-----------------
F
R
-
V
T
T
L
R
----------------
N
S
H
A
L
T
-----
L
Q
G
I
E
I
Y
D
I
D
G
N
S
V
K
V
A
T
I
N
G
T
-
F
R
I
V
S
Q
E
E
A
H
H
H
H
H
-
H
---------------------------------------------------------------------------------
30
Fugue
46.75
14%
-84
* C7 *
4O6Y
3
ACFR2_ARATH
A:
[10-219]
P
I
F
M
V
V
R
V
L
G
F
I
I
A
A
L
V
L
T
W
T
V
H
Y
R
G
G
L
A
L
S
S
D
N
-
K
---------
D
H
I
F
N
V
-
H
P
V
-------------
M
M
V
I
G
---
L
I
L
F
N
G
E
A
M
L
A
Y
K
----------
S
-----------
V
-
Q
G
-
T
K
N
L
K
K
L
V
H
-
L
T
L
-------
Q
L
T
A
F
I
L
---------
S
--
L
I
G
V
W
A
---
A
L
K
F
H
I
---------------
D
K
G
---------
I
E
N
F
----
Y
S
----------------
L
H
--
S
W
L
G
L
A
C
L
-----------------
F
L
-
F
A
F
Q
W
--
A
A
G
F
V
T
Y
----
W
Y
P
G
G
S
R
N
S
-----
R
A
S
L
M
P
W
H
V
F
L
G
I
S
I
Y
A
L
A
L
V
T
-
A
T
T
G
I
L
E
K
V
T
F
L
Q
V
-
N
Q
V
I
T
R
Y
S
T
E
----
A
M
L
V
N
T
M
G
V
L
I
L
I
L
G
G
F
V
I
L
-
G
V
V
T-------------------------------------------
18
HHSearch
44.93
15%
-43
- C8 -
2ZF9
-
?
A:
[39-150]
------------------------------------------------
K
T
L
-
T
A
A
-------------
E
A
-
P
N
---
A
K
V
T
M
E
L
S
V
E
G
A
A
----------
D
K----------
Y
-
A
A
-
T
G
L
H
I
Q
F
D
P
-
K
L
K
-------
L
I
P
--
D
E
DGAL
A
T
A
G
R
A
--
A
R
L
L
E
L
K
K
A
E
A
D
T
D
-----------------------------
N
S
F
----
F
T
---
A
T
G
S
ST---
N
--
N
G
K
--
D
G
--
V
L
W
S
-----------------
F
V
-
L
Q
V
P
A
DA
Q
P
G
D
-
K
Y
D
V
Q
V
A
Y
Q
-----------------------------------------------------------------------------------------------------------------------------------
16
HHSearch
42.71
15%
-135
- C8 -
1J8R
1
?
A:
[63-153]
-----------------------------------------------------------------------------------------------------------------------
W
V
V
F
P
K
-
K
V
M
T
QN
G
Y
P
L
F
I
E
--
V
H
---------
N
--
K
G
S
W
S
E
---
E
N
T
G
D
N
D
S
Y
F
F
L
K
GYKWDERA
F
D
A
---------
G
N
L
C
----
Q
K
---
P
--------
G
--
E
I
T
R
L
T
E
K
F
D
D
I
I
-----------------
F
K
-
V
A
L
P
A
DL
P
L
G
D
Y
S
V
K
I
----------------------------------------------------------------------------------------------------------------------------------------
13
PsiBlast_PDB
40.72
34%
-59
- C- -
2FFS
-
?
A:
[66-108]
-----------------------
V
V
E
D
E
V
V
L
K
A
P
-
D
---------
S
A
H
Y
S
I
-
K
P
S
-------------
A
E
V
A
G
---
G
S
L
D
M
T
I
E
E
P
E
P
G
----------
S
-----------
L
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
PsiBlast_PDB
40.43
41%
-38
- C6 -
2CSQ
-
A:
[31-59]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
-
S
P
N
P
D
--
A
A
E
E
E
L
-----
P
F
K
E
G
Q
I
I
K
-----
V
Y
G
D
K
D
A
D
----------------------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
38.62
34%
-53
- C- -
5HMT
-
?
A:
[68-112]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
P
T
E
----
W
K
---
T
I
V
------
S
--
G
I
T
--
A
G
R
Y
D
I
S
T
-----------------
S
V
-
T
K
T
P
K
--
R
A
E
V
A
G
F
T
D
-
S
Y
Y
K
Y
G
T
V
-------------------------------------------------------------------------------------------------------------------------------
34
Fugue
37.94
23%
-10
- C8 -
1QP2
-
PSAE_NOSS8
A:
[1-77]
----------------------------------------------------------------------------------------
M
----------
V
-----------
Q
-
R
G
-
S
K
V
R
I
L
R
P
E
-
S
Y
W
-------
F
Q
D
--
V
G
---------
T
--
V
A
S
V
D
Q
---
S
G
I
K
Y
------------------
P
---------
V
I
V
R
----
F
E
---
K
V
N
Y-----
S
--
G
I
N
--
T
N
N
F
A
E
D
E
-----------------
L
V
-
E
V
E
A
P
--
K
A
K
P
K
K
-------------------------------------------------------------------------------------------------------------------------------------------
14
PsiBlast_PDB
36.10
27%
-71
- C9 -
1DHJ
2
DYR_ECOLI
A:
[89-142]
-----------------------------------------------------
P
E
-------------
I
M
V
I
G
---
G
G
R
V
Y
E
Q
F
L
P
K
A
Q
----------
K
-----------
L
-
Y
L
-
T
H
I
D
A
E
V
E
G
-
D
T
H
-------
F
P
D
--
Y
E
---------
P
--
D
D
W
E
S
V
---
S
S
E
F
H
D
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
36
Fugue
35.65
18%
-89
- C4 -
1W8X
-
VP30_BPPRD
M:
[1-83]
---------------------------------------------------------------------
A
L
I
N
---
P
Q
F
P
Y
A
G
P
V
P
I
P
G
----------
P
-----------
A
-
P
T
E
T
M
P
L
L
N
Y
R
V
-
E
G
R
-------
I
A
G
--
I
Q
---------
Q
--
A
R
Q
F
M
P
---
F
L
Q
G
P
H
---------------
R
A
V
---------
A
E
Q
T
----
Y
H
---
A
I
G
------
T
--
G
I
Q
--
M
G
Q
T
F
N
Q
P
-----------------
L
I
-
N
T
Q
E
G
---------------------------------------------------------------------------------------------------------------------------------------------------
3
PsiBlast_PDB
35.61
26%
10
- C9 -
2C31
1
OXC_OXAFO
A:
[356-411]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
G
N
K
A
K
-----
L
A
G
K
M
T
A
E
T
P
S
G
M
M
N
Y
S
N
S
L
G
V
-
V
R
D
F
M
L
A
N
P
D
I
S
L
V
-
N
E
G
A
N
A
L
D
N
T
----
R
M
I
V
----------------------------------------------------------------