@TOME V2.3
(Nov 2016)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : bsu03981: (2016-06-06 )
MQQQEQQQGGMKVKVQRFGSYLSGMIMPNIGAFIAWGIITALFIPAGWFPNEQLNTLVSPMITYLLPLLIAYTGGKMIYDHRGGVVGATAAIGVIVGSDIPMFLGAMIMGPLGGYLIKQTDKLFKDKVKQGFEMLINNFTAGIVGAALTILAFYAIGPVVLTLNKLLAAGVEVIVHANLLPVASVFVEPAKVLFLNNAINHGILSPIGIEQASQTGKSILFLVEANPGPGLGILLAYMFFGKGSSKSTAPGAAIIHFFGGIHEIYFPYILMKPALILAAIAGGASGLLTFTIFNAGLVAAASPGSIIALMAMTPRGGYFGVLAGVLVAAAVSFIVSAVILKSSKASEEDLAAATEKMQSMKGKKSQAAAALEAEQAKAEEASELSPESVNKIIFACDAGMGSSAMGASILRNKVKKAELDISVTNTAINNLPSDADIVITHKDLTDRAKAKLPNATHISVDNFLNSPKYDELIEKLKK
Atome Classification :
(20 SA)
.........10........20........30........40..-----....-----..50------........60.....-------.-------..70----........80--........---90.....-----.---------------..100.......110.......120.-......130...-------....140....-...150....----...160.......170.......180.......190.......200...--...----.210---..--.....--.220--.---......230...----....240-.......250.......260..-.....270..---......280.......290.......--300..---.....310.......320.......330.......340.......350.......360.......370.......380.......390..--.....400.......410.......-420..-......430.---.--------.--------......440....-...---450-.--.--.......460--...-.-...470......----
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
M
Q
Q
Q
E
Q
QQGG
M
K
V
K
V
Q
R
F
G
S
Y
L
S
G
MIMP
N
I
G
A
F
I
A
W
G
I
I
T
A
L
F-----IPAG-----WF
P
N
------
E
Q
L
N
T
L
V
S
P
M
I
T
Y
L
L
-------
P
-------
L
L
I
A
----YTGG
K
M
I
Y
DH--RG
G
V
VGA
T
---
A
A
I
G
V
I
V-----G---------------SD
I
P
M
F
L
G
A
M
I
MGPLG
G
Y
L
I
K
Q
T
D
K
L
-
F
K
D
K
V
K
Q
G
F
E
M
L
-------
I
N
NFT
A
G
I
V
G
A
-
A
L
T
I
L
A
F
Y
A
I
----
G
P
V
V
L
T
L
N
K
L
L
A
A
G
V
E
V
I
V
HANL
L
P
V
A
S
V
FVEP
A
K
V
L
F
LNNAINHGILS--PI
G
----
I
E
Q
----
A
S--QTG
K
S
--
I
L
F
L
--
V
---EANPGP
G
L
G
I
L
L
----
A
Y
M
F
FGK-GSSKSTAP
G
A
A
I
I
H
F
FG
G
I
H
E
I
-
Y
F
P
Y
I
L
-M
K
P
---
A
L
I
L
A
A
I
AGGAS
G
L
L
T
F
T
I
FNA
G
L
VA--AASP
G
---
S
I
I
A
L
M
A
MTPRG
G
Y
F
G
V
L
A
G
V
L
V
A
A
A
V
S
F
I
V
S
A
V
I
LKSSKAS
E
E
D
L
A
A
A
T
E
K
M
Q
S
MKGK
K
S
Q
A
A
A
A
L
E
A
E
Q
A
K
A
E
E
A
SEL
S
P
E
S
V
N
K
I
I
F
--
A
CDAGMGS
S
A
M
G
A
S
I
L
R
N
K
V
KKA
E
L
-
D
-
I
S
V
-
T
N
T
A
INN--L---P--------S--------DA
D
I
V
I
T
HKDL
T
D
-
R
A
K---A---K--L--PNA
T
H
I
S
V
D
N
--FLN-S-P
K
Y
D
E
L
I
E
K
LKK----
41
Fugue
84.52
61%
-158
- C1 -
1VKR
-
PTM3C_ECOLI
A:
[375-471]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
H
V
R
K
I
I
V
--
A
C
D
A
G
M
G
S
S
A
M
G
A
G
V
L
R
K
K
I
Q
D
A
G
L
S
Q
-
I
S
V
-
T
N
S
A
I
N
N
--
L
---
P
--------
P
--------
D
V
D
L
V
I
T
H
R
D
L
T
E
-
R
A
M
---
R
---
Q
--
V
--
P
Q
A
Q
H
I
S
L
T
N
--
F
L
D
-
S
-
G
L
Y
T
S
L
T
E
R
L
V
A
A
Q
R
H
23
HHSearch
83.12
61%
-158
- C1 -
1VKR
-
PTM3C_ECOLI
A:
[375-466]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
H
V
R
K
I
I
V
--
A
C
D
A
G
M
G
S
S
A
M
G
A
G
V
L
R
K
K
I
Q
D
A
G
L
-
S
Q
I
S
V
-
T
N
S
A
I
N
N
--
L
---
P
--------
P
--------
D
V
D
L
V
I
T
H
R
D
L
T
E
-
R
A
M
---
R
---
Q
--
V
--
P
Q
A
Q
H
I
S
L
T
N
--
F
L
D
-
S
-
G
L
Y
T
S
L
T
E
R
L
V
-----
1
PsiBlast_PDB
82.75
64%
-162
- C1 -
1VKR
-
PTM3C_ECOLI
A:
[377-465]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
R
K
I
I
V
--
A
C
D
A
G
M
G
S
S
A
M
G
A
G
V
L
R
K
K
I
Q
D
A
G
L
-
S
Q
I
S
V
-
T
N
S
A
I
N
N
--
L
---
P
--------
P
--------
D
V
D
L
V
I
T
H
R
D
L
T
E
-
R
A
M
---
R
---
Q
--
V
--
P
Q
A
Q
H
I
S
L
T
N
--
F
L
D
-
S
-
G
L
Y
T
S
L
T
E
R
L
------
2
PsiBlast_PDB
82.16
62%
-149
- C1 -
1VRV
-
PTM3C_ECOLI
A:
[377-465]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
R
K
I
I
V
--
A
S
D
A
G
M
G
S
S
A
M
G
A
G
V
L
R
K
K
I
Q
D
A
G
L
-
S
Q
I
S
V
-
T
N
S
A
I
N
N
--
L
---
P
--------
P
--------
D
V
D
L
V
I
T
H
R
D
L
T
E
-
R
A
M
---
R
---
Q
--
V
--
P
Q
A
Q
H
I
S
L
T
N
--
F
L
D
-
S
-
G
L
Y
T
S
L
T
E
R
L
------
3
PsiBlast_PDB
81.87
62%
-151
- C1 -
2FEW
-
?
B:
[377-465]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
R
K
I
I
V
--
A
S
D
A
G
M
G
S
S
A
M
G
A
G
V
L
R
K
K
I
Q
D
A
G
L
-
S
Q
I
S
V
-
T
N
S
A
I
N
N
--
L
---
P
--------
P
--------
D
V
D
L
V
I
T
H
R
D
L
T
E
-
R
A
M
---
R
---
Q
--
V
--
P
Q
A
Q
H
I
S
L
T
N
--
F
L
D
-
S
-
G
L
Y
T
S
L
T
E
R
L
------
24
HHSearch
63.48
19%
-123
- C1 -
1E2B
-
PTQB_ECOLI
A:
[2-98]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
K
K
H
I
Y
L
--
F
S
S
A
G
M
S
T
S
-
L
L
V
S
K
M
R
A
Q
A
E
K
Y
E
V
-
P
-
V
I
I
-
E
A
F
P
E
T
L
--
A
---
G
E
K
G
-----
Q
--------
N
A
D
V
V
L
L
G
P
Q
I
A
Y
-
M
L
P
E
I
Q
R
---
L
--
L
--
P
N
K
P
V
E
V
I
D
S
--
L
L
Y
G
K
-
V
D
G
L
G
V
L
K
A
A
V
A
----
25
HHSearch
61.41
24%
-121
- C- -
3CZC
-
?
A:
[1-92]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
V
K
V
L
T
--
A
C
G
N
G
M
G
S
S
M
V
I
K
M
K
V
E
N
A
L
R
Q
L
G
V
S
D
-
I
E
S
-
A
S
C
S
V
G
E
--
A
---
K
G
L
A-----
S
--------
N
Y
D
I
V
V
A
S
N
H
L
I
H
-
E
L
D
---
G
---
R
-----
T
N
G
K
L
I
G
L
D
N
--
L
M
D
-
D
-
N
E
I
K
T
K
L
E
E
A
L
-----
35
HHSearch
58.19
18%
-198
- C1 -
4R6I
-
ATXA_BACAN
A:
[392-478]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
N
P
K
K
I
Y
V
--
Y
T
S
Q
G
C
I
H
R
E
Y
I
S
A
L
L
E
K
R
Y
N
G
L
-
I
-
K
-
I
V
R
N
T
I
I
N
L
T
N
E
S
L
Q
--
D
--------
M
--------
E
I
D
I
I
I
S
N
V
N
L
P
I
-
K
----------------
N
I
P
I
V
Q
I
S
E
--
F
P
T
-
E
-
R
D
F
H
E
I
K
K
I
I
------
28
HHSearch
57.46
9%
-144
- C1 -
3NBM
1
?
A:
[5-104]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
E
L
K
V
L
V
--
L
C
A
G
S
G
T
S
A
-
Q
L
A
N
A
I
N
E
G
A
N
L
T
E
V
-
R
-
V
I
A
-
N
S
G
A
Y
G
A
--
H
Y--
D
IM------
G
--------
V
Y
D
L
I
I
L
A
P
Q
V
R
S
-
Y
Y
R
---
E
M
K
V
D
--
A
ER
L
G
I
Q
I
V
A
T
R
G
M
E
Y
I
H
-
L
T
K
S
P
S
K
A
L
Q
F
V
L
-----
27
HHSearch
57.42
13%
-168
- C1 -
4MGE
2
?
A:
[1-96]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
N
I
L
L
--
C
C
S
A
G
M
S
T
S
L
L
V
-
T
K
M
E
A
A
A
K
A
R
G
L
-
E
-
G
K
I
-
W
A
V
S
G
D
A
--
V
---
K
TNI-----
D
--------
Q
A
D
V
L
L
L
G
P
Q
V
R
Y
-
M
L
S
---
S
M
K
T
L
--
A
D
E
R
N
V
G
I
D
V
I
N
P
--
M
H
Y
G
M
-
M
N
G
E
A
V
L
D
H
A
L
-----
21
HHSearch
56.26
15%
-143
- C1 -
3QNQ
8
?
A:
[13-426]
---------
A
G
K
V
A
E
Q
R
H
L
L
A
I
R
D
G
L
V
L
T
M
P
F
L
I
I
G
S
I
F
L
I
I
S
-----
T
L
P
I
PGY
S
E
F
M
A
S
L
FGKN
W
N
V
A
L
G
Y
P
V
S
A
T
F
N
I
M
-------
A
-------
L
I
A
V
F
G
I
A
Y
R
L
G
E
Y
Y
K
V
D
A
L
A
S
G
A
L
S
L
V
T
F
L
L
A
T
P
F
Q
V
A
Y
I
MP
G
TK
E
S
I
L
V
D
GVIP
A
A
L
M
G
S
Q
G
L
F
V
A
M
I
I
A
I
I
S
T
E
I
Y
R
F
L
V
Q
K
K
M
I
I
K
M
P
E
T
V
P
P
A
V
T
R
S
F
A
A
L
I
P
G
F
I
V
---
V
T
V
V
W
I
I
R
L
I
F
E
H
T
T
F
G
S
I
H
N
V
V
G
K
L
L
Q
E
P
L
S
I
L
G
A
S
L
W
G
A
V
I
A
V
I
L
V
H
V
L
W
A
C
----
G
I
H
G
A
T
I
V
G
G
V
M
S
P
I
W
L
S
L
M
D
Q
N
R
I
A
F
Q
A
G
Q
D
VP
N
T
I
T
AQ
F
FDL
W
I
Y
M
G
-
G
S
G
A
T
L
A
L
V
V
G
M
L
L
F
A
R
S
Q
Q
L
K
S
L
G
R
L
S
I
A
P
G
I
-
F
N
I
N
E
M
V
T
F
G
M
P
I
V
M
N
P
L
L
L
I
P
F
I
V
V
P
V
V
L
T
I
V
S
Y
F
A
M
E
W
G
L
V
A
R
P
SG
A
A
V
T
W
TTP
I
L
F
S
G
Y
L
G
--
S
G
G
K
I
S
G
V
I
L
Q
L
V
N
F
A
L
A
F
V
I
Y
L
P
F
L
K
I
W
D
K
Q
K
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
22
HHSearch
55.48
15%
-172
- C1 -
1TVM
-
PTKB_ECOL6
A:
[16-109]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Y
F
Q
G
S
K
R
K
I
I
V
--
A
C
G
G
A
V
A
T
S
T
M
A
A
E
E
I
K
E
L
C
Q
S
H
N
I
-
P
-
V
E
L
-
I
Q
C
R
V
N
E
--
I
---
E
TYM-----
D
--------
G
V
H
L
I
C
T
T
A
R
V
D
R
-
S
F
--------------
G
D
I
P
L
V
H
G
M
P
--
F
V
S
-
G
-
V
G
I
E
A
L
Q
N
K
I
L
T
----
26
HHSearch
53.56
13%
-178
- C1 -
2L2Q
-
?
A:
[2-100]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
P
G
S
M
N
I
L
L
--
V
C
G
A
G
M
S
T
S
M
L
V
Q
-
R
I
E
K
Y
A
K
S
K
N
I
-
N
-
A
T
I
-
E
A
I
A
E
T
R
--
L
---
S
E
V
V
-----
D
--------
R
F
D
V
V
L
L
A
P
Q
S
R
F
-
N
K
K
---
R
L
E
E
I
T
K
P
--
K
G
I
P
I
E
I
I
N
T
I
D
Y
G
T
---
M
N
G
E
K
V
L
Q
L
A
I
-----
29
HHSearch
51.34
21%
-106
- C1 -
2M1Z
-
?
A:
[2-97]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
R
K
I
I
A
V
T
A
C
A
T
G
V
A
H
T
Y
M
A
A
Q
A
L
K
K
G
A
K
K
M
G
N
-
L
-
I
K
V
-
E
T
Q
G
A
T
G
--
I
---
E
N
E
L
T
E
K
D
V
N
--------
I
G
E
V
V
I
F
A
V
D
T
K
V
R
N
K
E
-------
R
--
F
--
D
G
K
V
V
L
E
V
P
V
--
S
A
P
-
I
-
K
D
A
E
K
V
I
N
--------
5
PsiBlast_PDB
49.25
23%
-137
- C1 -
1IA7
3
?
A:
[325-430]
-----------------------------------------------------------
P
D
------
Q
S
L
L
D
L
A
K
K
Q
V
D
Y
I
L
GDNPANM
S
-------
Y
I
I
G
----
Y
G
S
N
W
C
I
H
P
H
--
H
R
A
A
N
G
Y
T
---
Y
A
N
G
D
N
A
-----
K
---------------
P
A
K
H
L
L
T
G
A
L
V
G
G
P
------
D
Q
N
D
K
F
-
L
D
D
A
N
Q
Y
Q
Y
T
E
V
-------
A
L
D
Y
N
A
G
L
V
G
V
-
L
A
G
A
I
K
F
F
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
PsiBlast_PDB
48.96
23%
-147
- C1 -
1IA6
1
?
A:
[325-430]
-----------------------------------------------------------
P
D
------
Q
S
L
L
D
L
A
K
K
Q
V
D
Y
I
L
GDNPANM
S
-------
Y
I
I
G
----
Y
G
S
N
W
C
I
H
P
H
--
H
R
A
A
N
G
Y
T
---
Y
A
--
D
N
A
-----
K
---------------
P
A
K
H
L
L
T
G
A
L
V
G
G
P
------
D
Q
N
D
K
F
-
L
D
D
A
N
Q
Y
Q
Y
T
E
V
-------
A
L
D
Y
N
A
G
L
V
G
V
-
L
A
G
A
I
K
F
F
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
31
HHSearch
48.68
22%
-94
- C- -
2R48
-
PTN3B_BACSU
A:
[0-95]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
A
K
L
L
A
I
T
S
C
P
N
G
I
A
H
T
Y
M
A
A
E
N
L
Q
K
A
A
D
R
L
G
V
-
S
-
I
K
V
-
E
T
Q
G
G
I
G
--
V
---
E
NKLT
E
E
E
I
R
--------
E
A
D
A
I
I
I
A
A
D
R
S
V
-
N
K
D
---
R
------
F
--
I
G
K
K
L
L
S
V
G
V
--
Q
D
G
-
I
-
R
K
P
E
E
L
I
Q
K
-------
34
HHSearch
48.54
14%
-184
- C1 -
3SQN
-
?
A:
[393-477]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
Q
T
M
T
A
Y
F
--
L
F
Q
G
E
P
A
W
K
A
F
L
Q
Q
E
L
A
A
Y
L
G
T
-
R
V
-
K
---
L
-
Q
A
I
E
Y
V
E
--
L
SQL
T
L-------
N
--------
E
A
D
I
I
I
S
N
F
P
----
L
----------------
D
L
P
V
F
Y
L
S
L
--
I
P
T
-
K
-
N
E
L
R
R
L
A
E
L
T
------
30
HHSearch
47.82
15%
-140
- C1 -
4TN5
1
PTFB3_ECOLI
A:
[2-84]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
Y
L
V
A
V
T
A
C
V
S
G
V
A
H
T
Y
M
A
A
E
R
L
E
K
L
C
L
L
E
K
W
-
G
-
V
S
I
-
E
T
Q
G
A
L
G
--
T
---
E
--------
N
RLA
D
E
D
I
R
R
A
D
V
A
L
L
I
T
D
I
E
L
A
G
A
E
---
R
------
F
--
E
H
C
R
Y
V
Q
C
S
I
------------------------
18
PsiBlast_PDB
47.74
27%
-155
- C1 -
3RKO
1
?
L:
[384-508]
------------------------------
A
A
L
S
A
L
P
L
V
T
A
G
F
FSKDE
I
L
A
G
-----
A
M
A
N
------
G
H
I
N
L
M
V
A
G
L
V
G
A
F
M
-------
T
SLYTFRM
I
F
I
V
----
F
H
G
K
E
Q
I
H
A
H
----
A
V
K
G
V
T
---
H
S
L
P
L
I
V
-----
L
---------------
L
I
L
S
T
F
V
G
A
L
I
V
P
P
L
Q
G
V
L
P
Q
T
T
E
-------
L
A
H
G
-
S
M
L
-------
T
L
E
I
T
S
G
V
V
A
V
-
V
G
I
L
L
A
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------