@TOME V2.3
(Nov 2016)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : bsu04460: (2016-06-07 )
MARKEWKVLLIEDDPMVQEVNKDFITTVKGVTVCATAGNGEEGMKLIKEEQPDLVILDVYMPKKDGIKTLQEIRKQKLEVDVIVVSAAKDKETISLMLQNGAVDYILKPFKLERMRQALEKYKQYKQKIEANDTLSQEQLDAILNIPQQAVQDLPKGLNHFTMNEVTAFLKQQTASLSAEEVAKALGIARVTARRYLDYLEKTGIIKLDVQYGGVGRPVNRYVLKG
Atome Classification :
(20 SA)
.........10..-----......20........30..-......40........50........60........70........80........90........100.......110---.----..-.....120------.......130.......140......--.150.......160.......170...-....180....---...190.......200.......210.......220....--------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
MAR
K
E
W
K
V
L
L
I
ED-----D
P
M
V
Q
E
V
N
K
D
F
I
TTVK
G
V
T
V
-
C
A
TAGN
G
E
E
G
M
K
L
I
KEEQP
D
L
V
I
L
D
V
YMPKKD
G
I
K
T
L
Q
E
I
R
K
QKL
E
V
D
V
I
V
V
SAAKDKE
T
I
S
L
M
LQNGA
V
D
YILK
P
F
K
----
L
----
E
R
-
M
R
Q
A
L
E
K
Y
------
K
Q
Y
K
Q
K
IEANDTL
S
Q
E
Q
L
D
A
I
LN
I
P
Q
--
Q
A
V
Q
D
L
P
K
G
L
N
H
F
T
M
N
E
V
T
A
F
L
K
Q
Q
TA-SL
S
A
E
E
V
A
K
A
L
---
G
I
A
R
V
T
A
R
R
Y
L
D
Y
L
E
KT
G
I
I
K
L
D
V
Q
YGGVGRP
V
N
R
YVLKG--------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
75.71
29%
-118
- C5 -
4HYE
-
?
A:
[2-174]
------
K
V
L
V
A
E
D
-----
Q
S
M
L
R
D
A
M
C
Q
L
L
T
L
Q
P
D
V
E
S
-
V
L
Q
A
K
N
G
Q
E
A
I
Q
L
L
E
K
E
S
V
D
I
A
I
L
D
V
E
M
P
V
K
T
G
L
E
V
L
E
W
I
R
S
E
K
L
E
T
K
V
V
V
V
T
T
F
K
R
A
G
Y
F
E
R
A
V
K
A
G
V
D
A
Y
V
L
K
E
R
S
----
I
----
A
D
-
L
M
Q
T
L
H
T
V
------------
L
E
G
R
K
E
Y
S
P
E
L
M
E
M
V
M
T
R
P
-------------
N
P
L
T
E
Q
E
I
-
A
V
L
K
G
I
A
R
-
G
L
S
N
Q
E
I
A
D
Q
L
---
Y
L
S
N
G
T
I
R
N
Y
V
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
89
HHSearch
73.55
28%
-113
- C4 -
4HYE
-
?
A:
[0-189]
----
H
M
K
V
L
V
A
E
D
-----
Q
S
M
L
R
D
A
M
C
Q
L
L
T
L
Q
P
D
V
E
S
-
V
L
Q
A
K
N
G
Q
E
A
I
Q
L
L
E
K
E
S
V
D
I
A
I
L
D
V
E
M
P
V
K
T
G
L
E
V
L
E
W
I
R
S
E
K
L
E
T
K
V
V
V
V
T
T
F
K
R
A
G
Y
F
E
R
A
V
K
A
G
V
D
A
Y
V
L
K
E
R
S
----
I
----
A
D
-
L
M
Q
T
L
H
T
V
------
L
E
G
R
K
E
Y
------
S
P
E
L
----
M
E
M
------
V
M
T
R
P
N
P
L
T
E
Q
E
-
I
A
V
L
K
G
I
A
R
----
G
L
S
N
Q
E
I
A
D
Q
L
---
Y
L
S
N
G
T
I
R
N
Y
V
T
N
I
L
S
K
L
D
A
G
N
R
T
E
A
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
PsiBlast_PDB
69.43
34%
-146
- C5 -
1TMY
-
CHEY_THEMA
A:
[4-119]
------
R
V
L
I
V
D
D
-----
A
A
F
M
R
M
M
L
K
D
I
I
T
K
A
-
G
Y
E
V
-
A
G
E
A
T
N
G
R
E
A
V
E
K
Y
K
E
L
K
P
D
I
V
T
M
D
I
T
M
P
E
M
N
G
I
D
A
I
K
E
I
M
K
I
D
P
N
A
K
I
I
V
C
S
A
M
G
Q
Q
A
M
V
I
E
A
I
K
A
G
A
K
D
F
I
V
K
P
F
Q
----
P
----
S
R
-
V
V
E
A
L
N
K
V
------
S
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
PsiBlast_PDB
67.94
34%
-146
- C5 -
2TMY
-
CHEY_THEMA
A:
[4-119]
------
R
V
L
I
V
D
D
-----
A
A
F
M
R
M
M
L
K
D
I
I
T
K
A
-
G
Y
E
V
-
A
G
E
A
T
N
G
R
E
A
V
E
K
Y
K
E
L
K
P
D
I
V
T
M
D
I
T
M
P
E
M
N
G
I
D
A
I
K
E
I
M
K
I
D
P
N
A
K
I
I
V
C
S
A
M
G
Q
Q
A
M
V
I
E
A
I
K
A
G
A
K
D
F
I
V
K
P
F
Q
----
P
----
S
R
-
V
V
E
A
L
N
K
V
------
S
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
70
PsiBlast_CBE
67.50
31%
-203
- C5 -
4L85
9
KDPE_ECOLI
A:
[6-121]
-------
V
L
I
V
E
D
-----
E
---
Q
A
I
R
R
F
L
R
T
A
L
E
G
D
G
M
R
V
F
E
A
E
T
L
Q
R
G
L
L
E
A
A
T
R
K
P
D
L
I
I
L
A
L
G
-----
G
I
E
F
I
R
D
L
R
-
Q
W
S
A
V
P
V
I
V
L
S
A
R
S
E
E
S
D
K
I
A
A
L
D
A
G
A
D
D
Y
L
S
K
P
F
G
----
I
G
E
L
Q
A
R
-
L
R
V
A
L
R
R
H
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
PsiBlast_PDB
67.04
35%
-154
- C- -
1U0S
-
CHEY_THEMA
Y:
[4-117]
------
R
V
L
I
V
D
D
-----
A
A
F
M
R
M
M
L
K
D
I
I
T
K
A
-
G
Y
E
V
-
A
G
E
A
T
N
G
R
E
A
V
E
K
Y
K
E
L
K
P
D
I
V
T
M
D
I
T
M
P
E
M
N
G
I
D
A
I
K
E
I
M
K
I
D
P
N
A
K
I
I
V
C
S
A
M
G
Q
Q
A
M
V
I
E
A
I
K
A
G
A
K
D
F
I
V
K
P
F
Q
----
P
----
S
R
-
V
V
E
A
L
N
K
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
13
PsiBlast_PDB
66.01
35%
-149
- C5 -
1A04
-
NARL_ECOLI
A:
[9-129]
-------
I
L
L
I
D
D
-----
H
P
M
L
R
T
G
V
K
Q
L
I
S
M
A
P
D
I
T
V
-
V
G
E
A
S
N
G
E
Q
G
I
E
L
A
E
S
L
D
P
D
L
I
L
L
D
L
N
M
P
G
M
N
G
L
E
T
L
D
K
L
R
E
K
S
L
S
G
R
I
V
V
F
S
V
S
N
H
E
E
D
V
V
T
A
L
K
R
G
A
D
G
Y
L
L
K
D
M
E
----
P
----
E
D
-
L
L
K
A
L
H
Q
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
14
PsiBlast_PDB
65.63
35%
-158
- C5 -
1RNL
6
NARL_ECOLI
A:
[8-133]
-------
I
L
L
I
D
D
-----
H
P
M
L
R
T
G
V
K
Q
L
I
S
M
A
P
D
I
T
V
-
V
G
E
A
S
N
G
E
Q
G
I
E
L
A
E
S
L
D
P
D
L
I
L
L
D
L
N
M
P
G
M
N
G
L
E
T
L
D
K
L
R
E
K
S
L
S
G
R
I
V
V
F
S
V
S
N
H
E
E
D
V
V
T
A
L
K
R
G
A
D
G
Y
L
L
K
D
M
E
----
P
----
E
D
-
L
L
K
A
L
H
Q
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
PsiBlast_PDB
65.32
31%
-131
- C5 -
3F7A
-
?
A:
[4-171]
---
V
S
A
T
L
L
I
I
D
D
-----
D
E
V
V
R
E
S
L
A
A
Y
L
E
D
S
N
F
K
V
L
-
Q
A
L
--
N
G
L
Q
G
L
Q
I
F
E
S
E
Q
P
D
L
V
I
C
D
L
R
M
P
Q
I
D
G
L
E
L
I
R
R
I
R
Q
T
A
S
E
T
P
I
I
V
L
S
G
A
G
V
M
S
D
A
V
E
A
L
R
L
G
A
A
D
Y
L
I
K
P
L
E
D
L
A
V
L
----
E
H
S
V
R
R
A
L
D
R
A
Y
L
R
V
E
N
Q
R
Y
R
D
K
L
E
A
----
A
N
R
E
L
Q
A
S
L
N
L
L
Q
--
E
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
88
HHSearch
64.69
25%
-90
- C4 -
1A04
-
NARL_ECOLI
A:
[5-206]
---
E
P
A
T
I
L
L
I
D
D
-----
H
P
M
L
R
T
G
V
K
Q
L
I
S
M
A
P
D
I
T
V
-
V
G
E
A
S
N
G
E
Q
G
I
E
L
A
E
S
L
D
P
D
L
I
L
L
D
L
N
M
P
G
M
N
G
L
E
T
L
D
K
L
R
E
K
S
L
S
G
R
I
V
V
F
S
V
S
N
H
E
E
D
V
V
T
A
L
K
R
G
A
D
G
Y
L
L
K
D
M
E
----
P
----
E
D
-
L
L
K
A
L
H
Q
A
------
A
A
G
E
M
V
L
S
E
--
A
L
T
P
V
L
A
A
S
L
----------
E
R
D
V
N
Q
L
T
P
R
-
E
R
D
I
L
K
L
I
A
Q
G
----
L
P
N
K
M
I
A
R
R
L
---
D
I
T
E
S
T
V
K
V
H
V
K
H
M
L
K
K
M
K
L
K
S
R
V
E
A
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
64.56
34%
-125
- C5 -
4IGA
3
CHEY_THEMA
A:
[7-121]
------
R
V
L
I
V
D
D
-----
A
A
F
M
R
M
M
L
K
D
I
I
T
K
A
-
G
Y
E
V
-
A
G
E
A
T
N
G
R
E
A
V
E
K
Y
K
E
L
K
P
D
I
V
T
M
D
I
T
M
P
E
M
N
G
I
D
A
I
K
E
I
M
K
I
D
P
N
A
K
I
I
V
C
S
A
M
G
Q
Q
A
M
V
I
E
A
I
K
A
G
A
K
D
F
I
V
K
P
F
Q
----
P
----
S
R
-
V
V
E
A
L
N
K
V
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
54
PsiBlast_CBE
64.28
34%
-166
- C5 -
3NNN
2
?
A:
[4-110]
------
R
V
L
V
V
E
D
E
R
D
L
A
D
L
I
T
E
A
L
K
K
E
M
F
T
----
V
D
V
-
C
Y
---
D
G
E
E
G
M
Y
M
A
L
N
E
P
F
D
V
V
I
L
D
I
M
L
P
V
H
D
G
W
E
I
L
K
S
M
R
E
S
G
V
N
T
P
V
L
M
L
T
A
L
S
D
V
E
Y
R
V
K
G
L
N
M
G
A
D
D
Y
L
P
K
P
F
D
----
L
----
R
E
-
L
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
100
HHSearch
64.04
20%
-124
- C4 -
1P2F
-
?
A:
[2-198]
----
M
W
K
I
A
V
V
D
D
-----
D
K
N
I
L
K
K
V
S
E
K
L
Q
Q
L
-
G
R
---
V
K
T
F
L
T
G
E
D
F
L
N
--
D
E
E
A
F
H
V
V
V
L
D
V
M
L
P
D
Y
S
G
Y
E
I
C
R
M
I
K
E
T
R
P
E
T
W
V
I
L
L
T
L
L
S
D
D
E
S
V
L
K
G
F
E
A
G
A
D
D
Y
V
T
K
P
F
N
----
P
----
E
I
-
L
L
A
R
V
K
R
F
------
L
E
R
E
K
K
G
----
L
Y
D
F
G
D
L
K
I
D
A
T
G
F
T
--
V
F
L
K
G
K
R
I
H
L
P
K
K
E
-
F
E
I
L
L
F
L
A
E
N
A
G
K
V
V
T
R
E
K
L
L
E
T
F
WED
P
V
S
P
R
V
V
D
T
V
I
K
R
I
R
K
A
I
E
D
D
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
90
HHSearch
63.88
19%
-109
- C4 -
4LDZ
5
DESR_BACSU
A:
[4-192]
---
S
M
I
S
I
F
I
A
E
D
-----
Q
Q
M
L
L
G
A
L
G
S
L
L
N
L
E
D
D
M
E
V
-
V
G
K
G
T
T
G
Q
D
A
V
D
F
V
K
K
R
Q
P
D
V
C
I
M
D
I
E
M
P
G
K
T
G
L
E
A
A
E
E
L
K
D
--
T
G
C
K
I
I
I
L
T
T
F
A
R
P
G
Y
F
Q
R
A
I
K
A
G
V
K
G
Y
L
L
K
D
S
P
----
S
----
E
E
-
L
A
N
A
I
R
S
V
------
M
N
G
K
R
I
Y
------
A
P
E
L
M
E
D
L
Y
----------
S
E
A
N
P
L
T
D
R
-
E
K
E
V
L
E
L
V
A
D
G
----
K
N
T
K
E
I
A
Q
E
L
---
S
I
K
S
G
T
V
R
N
Y
I
S
M
I
L
E
K
L
E
V
K
N
R
I
E
A
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
85
HHSearch
63.86
20%
-126
- C4 -
1YIO
4
?
A:
[3-193]
---
A
K
P
T
V
F
V
V
D
D
-----
D
M
S
V
R
E
G
L
R
N
L
L
R
S
-
A
G
F
E
V
-
E
-
T
F
D
C
A
S
T
F
L
E
H
R
R
P
E
Q
H
G
C
L
V
L
D
M
R
M
P
G
M
S
G
I
E
L
Q
E
Q
L
T
A
I
S
D
G
I
P
I
V
F
I
T
A
H
G
D
I
P
M
T
V
R
A
M
K
A
G
A
I
E
F
L
P
K
P
F
E
----
E
----
Q
A
-
L
L
D
A
I
E
Q
G
------
L
Q
L
N
A
E
R
R
---
Q
-
A
R
E
T
Q
D
Q
----------
L
E
Q
L
F
S
S
L
T
G
R
E
-
Q
Q
V
L
Q
L
T
I
R
G
----
L
M
N
K
Q
I
A
G
E
L
---
G
I
A
E
V
T
V
K
V
H
R
H
N
I
M
Q
K
L
N
V
R
S
L
A
N
L
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
PsiBlast_PDB
63.64
34%
-122
- C5 -
3TMY
1
CHEY_THEMA
A:
[4-119]
------
R
V
L
I
V
D
D
-----
A
A
F
M
R
M
M
L
K
D
I
I
T
K
A
-
G
Y
E
V
-
A
G
E
A
T
N
G
R
E
A
V
E
K
Y
K
E
L
K
P
D
I
V
T
M
D
I
T
M
P
E
M
N
G
I
D
A
I
K
E
I
M
K
I
D
P
N
A
K
I
I
V
C
S
A
M
G
Q
Q
A
M
V
I
E
A
I
K
A
G
A
K
D
F
I
V
K
P
F
Q
----
P
----
S
R
-
V
V
E
A
L
N
K
V
------
S
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
22
PsiBlast_CBE
63.12
34%
-128
- C5 -
3TMY
1
CHEY_THEMA
B:
[4-119]
------
R
V
L
I
V
D
D
-----
A
A
F
M
R
M
M
L
K
D
I
I
T
K
A
-
G
Y
E
V
-
A
G
E
A
T
N
G
R
E
A
V
E
K
Y
K
E
L
K
P
D
I
V
T
M
D
I
T
M
P
E
M
N
G
I
D
A
I
K
E
I
M
K
I
D
P
N
A
K
I
I
V
C
S
A
M
G
Q
Q
A
M
V
I
E
A
I
K
A
G
A
K
D
F
I
V
K
P
F
Q
----
P
----
S
R
-
V
V
E
A
L
N
K
V
------
S
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
53
PsiBlast_CBE
63.04
34%
-166
- C5 -
3NNN
2
?
B:
[4-110]
------
R
V
L
V
V
E
D
ERDLA
D
L
I
T
E
A
L
K
K
E
M
F
T
----
V
D
V
-
C
Y
---
D
G
E
E
G
M
Y
M
A
L
N
E
P
F
D
V
V
I
L
D
I
M
L
P
V
H
D
G
W
E
I
L
K
S
M
R
E
S
G
V
N
T
P
V
L
M
L
T
A
L
S
D
V
E
Y
R
V
K
G
L
N
M
G
A
D
D
Y
L
P
K
P
F
D
----
L
----
R
E
-
L
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
82
Fugue
62.61
19%
-144
- C4 -
1NY5
8
?
A:
[1-384]
-----
M
N
V
L
V
I
E
D
-----
D
K
V
F
R
G
L
L
E
E
Y
L
S
M
K
G
I
K
V
E
-
S
A
E
--
R
G
K
E
A
Y
K
L
L
S
E
K
H
F
N
V
V
L
L
D
L
L
L
P
D
V
N
G
L
E
I
L
K
W
I
K
E
R
S
P
E
T
E
V
I
V
I
T
G
H
G
T
I
K
T
A
V
E
A
M
K
M
G
A
Y
D
F
L
T
K
P
C
M
----
L
----
E
E
-
I
E
L
T
I
N
K
A
------
I
E
H
R
K
L
R
K
E
N
E
L
L
R
R
E
K
D
L
K
E
E
E
Y
V
F
E
S
P
K
M
K
E
I
L
E
K
I
K
K
I
S
C
A
E
C
P
V
L
I
T
G
E
S
G
-
V
-
G
K
E
V
V
A
R
L
I
---
H
K
L
S
D
R
S
K
E
P
F
V
A
L
N
V
A
S
I
P
R
D
I
F
E
A
E
L
F
G
Y
E
K
G
A
F
T
G
A
V
S
S
K
E
G
F
F
E
L
A
DG
G
T
L
F
L
D
EIGELS
L
E
A
Q
A
K
L
L
R
V
I
E
SG
K
F
Y
R
LGGRK
E
I
E
V
N
V
R
I
L
A
A
T
NRN
I
K
E
L
V
K
E
GKFR
E
D
L
Y
Y
R
L
G
V
I
E
I
E
I
P
P
LRERKED
I
I
P
L
A
N
H
F
L
K
K
F
S
R
K
Y
AKEVEGFT
K
S
A
Q
E
L
L
L
S
YPWYGN
V
R
E
L
K
N
V
I
E
R
A
V
L
F
SEGKFID
R
G
E
L
S
C
L
V
4
PsiBlast_PDB
62.59
34%
-115
- C5 -
4TMY
1
CHEY_THEMA
A:
[4-119]
------
R
V
L
I
V
D
D
-----
A
A
F
M
R
M
M
L
K
D
I
I
T
K
A
-
G
Y
E
V
-
A
G
E
A
T
N
G
R
E
A
V
E
K
Y
K
E
L
K
P
D
I
V
T
M
D
I
T
M
P
E
M
N
G
I
D
A
I
K
E
I
M
K
I
D
P
N
A
K
I
I
V
C
S
A
M
G
Q
Q
A
M
V
I
E
A
I
K
A
G
A
K
D
F
I
V
K
P
F
Q
----
P
----
S
R
-
V
V
E
A
L
N
K
V
------
S
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------