@TOME V2.3
(Nov 2016)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : bsu05950: (2016-06-09 )
MMILQVNQLSKSFGADTILNNIKLEVRNRDRIAIVGRNGAGKSTLLKIIAGQLSYEKGEIIKPKDITMGYLAQHTGLDSKLTIKEELLTVFDHLKAMEKEMRAMEEKMAAADPGELESIMKTYDRLQQEFKDKGGYQYEADVRSVLHGLGFSHFDDSTQVQSLSGGQKTRLALGKLLLTQPDLLILDEPTNHLDIDTLTWLEHYLQGYSGAILIVSHDRYFLDKVVNQVYEVSRAESKKYHGNYSAYLDQKAAQYEKDLKMYEKQQDEIAKLQDFVDRNLARASTTKRAQSRRKQLERMDVMSKPLGDEKSANFHFDITKQSGNEVLRVQDLTISYENQPPLLTEVSFMLTRGESAALVGPNGIGKSTLLKTLIDTLKPDQGTISYGSNVSVGYYDQEQAELTSSKRVLDELWDEYPGLPEKEIRTCLGNFLFSGDDVLKPVHSLSGGEKARLALAKLMLQKANFLILDEPTNHLDLDSKEVLENALIDYPGTLLFVSHDRYFINRIATRVLELSSSHIEEYLGDYDYYTEKKTEQLELEKMNQQEETDKTPATVKSDSKRSYEEEKEWKKKERQRLRRIEEIETTVQTIEENISRNDELLCDPEVYQDHEKVQAIHADNEKLNQELESLLSEWEELSTEED
Atome Classification :
(20 SA)
.........10..--.-.....20........30........40........50.-........--------------60...-------------..--...70.....-...80......----------..90........100.....-----..110.----......120..---.....130.......140.......150.......160.......170.......180.......190...---.---...200.....----.----.---210........220.......230.......240.....-..250.......260.......270.......280.......290.--......300.......310....-...320--.......330.....-.-.--340.......350.......360.......370.......380......-----------.-----------390......-.400..--......410-----------------------------------------------------------------....----.-------------------------------------..----.--------420.......430...----------.----.-..440---------........450.......460.......470....----...480.......490--.----........500.......510....-...520.......530.......540.......550.......560.......570.......580.......590.......600.......610.......620.......630.......640
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
M
M
I
L
Q
V
N
Q
L
S
K
SF--G-
A
D
T
I
LNN
I
K
L
E
V
RNR
D
R
I
A
I
VGRNGA
G
K
S
T
L
L
K
I
I
A
-
G
-QLSYEKGE--------------IIKPK-------------D
I
--
T
M
G
Y
L
A
Q
HTG-LDSKL
T
I
K
E
E
L
----------
L
T
V
F
D
H
L
K
A
M
E
K
E
M
R
A
M
E
E
K
-----MAAA
D
P
----
G
E
L
E
S
I
M
K
T
Y
D
---
R
L
Q
Q
E
F
K
DKGG
Y
Q
Y
E
A
D
V
R
S
V
L
H
G
LGFSHFDDST
Q
V
QSLSGG
Q
K
T
R
L
A
L
G
K
L
LLTQP
D
L
L
I
LDEPTNHLDI---
D
---
T
L
T
W
L
E
H
Y
L
Q
G----Y----S---
G
A
-
I
L
I
V
SH
D
R
Y
F
L
D
K
V
V
N
Q
V
Y
E
V
S
RAESKKYHGN
Y
S
A
Y
-
L
D
Q
K
A
A
Q
Y
E
K
D
L
K
M
Y
E
K
Q
Q
D
E
I
A
K
L
Q
D
F
V
D
R
N
L
A
RAS
T
T
K
R
A
Q
S
R
R
--
K
Q
L
E
R
M
D
V
M
SKPLGDEKSA
N
F
H
F
-
D
I
TKQS--G
N
E
V
L
R
V
Q
D
L
T
I
SYE-N-Q--PP
L
L
T
E
V
S
F
M
LTRGE
S
A
A
LVGPNGI
G
K
S
T
L
L
K
T
L
I
D
TLKPDQ
G
T
I
SYGS-----------N-----------
V
S
V
G
YY
D
Q
E
-
Q
A
-
E
L
T
--
S
S
K
R
V
L
D
E
------------------------------------------------------------------
L
W
D
E----Y-------------------------------------PG----L--------
P
E
K
E
I
R
T
C
L
G
N
FLFSG----------
D
----
D
-
V
L
K
P
----------
V
H
SLSGG
E
K
A
R
L
A
L
A
K
L
M
L
QKA
N
F
L
I
LDEPTNHLD----L
D
S
K
E
V
L
E
N
A
L
IDY----P----
G
T
L
L
F
V
SH
D
R
Y
F
I
N
R
I
A
T
R
V
L
E
L
S
S
-
S
H
I
E
E
Y
LGDYDYYTEK
K
T
E
Q
L
E
L
E
KMNQQEETDKTPATVKSDSKR
S
Y
E
E
E
K
E
W
K
K
K
E
R
Q
R
L
R
R
I
E
E
I
E
T
T
V
Q
T
I
E
E
N
ISRNDELLC
D
P
E
V
Y
Q
D
H
E
K
V
Q
A
I
HAD
N
E
K
L
N
Q
E
L
E
S
L
L
S
E
W
E
E
LSTEED
2
PsiBlast_PDB
82.23
34%
-82
- C2 -
4FIN
12
ETTA_ECOLI
A:
[21-538]
--------------------
I
L
K
N
I
S
L
S
F
F
P
G
A
K
I
G
V
L
G
L
N
G
A
G
K
S
T
L
L
R
I
M
A
-
G
-
I
D
K
D
I
E
G
E
--------------
A
R
P
Q
P
-------------
D
I
--
K
I
G
Y
L
P
Q
E
P
Q
-
L
N
P
E
H
T
V
R
E
S
I
E
E
A
V
S
E
V
V
N
A
L
K
R
L
D
E
V
Y
A
L
Y
A
D
P
D
A
D
F
D
K
-----
L
A
A
-
E
Q
----
G
R
L
E
E
I
I
Q
-------------------
L
N
V
Q
L
E
R
A
A
D
A
L
R
L
P
D
W
D
--
A
K
I
A
N
L
S
G
G
E
R
R
R
V
A
L
C
R
L
L
L
E
K
P
D
M
L
L
L
D
E
P
T
N
H
L
D
A
---
E
---
S
V
A
W
L
E
R
F
L
H
D
----
F
----
E
---
G
T
-
V
V
A
I
T
H
D
R
Y
F
L
D
N
V
A
G
W
I
L
E
L
D
R
G
E
G
I
P
W
E
G
N
Y
S
S
W
-
L
E
Q
K
D
Q
R
L
A
Q
E
A
S
Q
E
A
A
R
R
K
S
I
E
K
E
L
E
W
V
-----
R
Q
G
T
K
----
K
G
K
--
A
R
L
A
R
F
E
E
L
N
S
T
E
Y
Q
K
R
N
E
T
N
E
L
-
F
I
P
P
G
P
RL
G
D
K
V
L
E
V
S
N
L
R
K
S
Y
G
-
D
-
R
---
L
L
I
D
D
L
S
F
S
I
P
K
G
A
I
V
G
I
I
G
P
N
G
A
G
K
S
T
L
F
R
M
I
S
G
Q
E
Q
P
D
S
G
T
I
T
L
G
E
-----------
T
-----------
V
K
L
A
S
V
D
Q
F
-
R
D
-
S
M
D
--
N
S
K
T
V
----------------------------------------------------------------------
W
E
E
----
V
-------------------------------------
S
G
----
G
LDIMKIGN
T
E
M
P
S
R
A
Y
V
G
R
F
N
F
K
G
----------
V
----
D
-
Q
G
K
R
----------
V
G
E
L
S
G
G
E
R
G
R
L
H
L
A
K
L
L
Q
V
G
G
N
M
L
L
L
D
E
P
T
N
D
L
D
----
I
E
T
L
R
A
L
E
N
A
L
L
E
F
----
P
----
G
C
A
M
V
I
S
H
D
R
W
F
L
D
R
I
A
T
H
I
L
D
Y
Q
D
E
G
K
V
E
F
F
E
G
N
F
T
E
Y
E
E
Y
K
K
R
T
L
---------------------------------------------------------------------------------------------------------
31
HHSearch
79.49
33%
-84
- C2 -
4FIN
13
ETTA_ECOLI
A:
[4-534]
-
F
V
Y
T
M
H
R
V
G
K
V
V
--
P
P
K
R
H
I
L
K
N
I
S
L
S
F
F
P
G
A
K
I
G
V
L
G
L
N
G
A
G
K
S
T
L
L
R
I
M
A
-
G
-
I
D
K
D
I
E
G
E
--------------
A
R
P
Q
P
-------------
D
I
--
K
I
G
Y
L
P
Q
E
P
Q
-
L
N
P
E
H
T
V
R
E
S
I
----------
E
E
A
V
S
E
V
V
N
A
L
K
R
L
D
E
V
Y
A
L
-----
Y
A
D
P
D
-----
A
D
F
D
K
L
A
A
E
Q
G
---
R
L
E
E
I
I
Q
------
L
N
V
Q
L
E
R
A
A
D
A
L
R
L
P
--
D
W
D
A
K
I
A
N
L
S
G
G
E
R
R
R
V
A
L
C
R
L
L
L
E
K
P
D
M
L
L
L
D
E
P
T
N
H
L
D
A
---
E
---
S
V
A
W
L
E
R
F
L
H
D
----
F
----
E
---
G
T
-
V
V
A
I
T
H
D
R
Y
F
L
D
N
V
A
G
W
I
L
E
L
D
R
G
E
G
I
P
W
E
G
N
Y
S
S
W
-
L
E
Q
K
D
Q
R
L
A
Q
E
A
S
Q
E
A
A
R
R
K
S
I
E
K
E
L
E
W
V
R
Q
G
T
K
------
K
G
K
A
R
L
--
A
R
F
E
E
L
N
S
T
E
Y
Q
K
-
R
N
E
T
N
E
L
F
I
-
P
P
G
P
R
L
--
G
D
K
V
L
E
V
S
N
L
R
K
S
Y
G
-
D
----
R
L
L
I
D
D
L
S
F
S
I
P
K
G
A
I
V
G
I
I
G
P
N
G
A
G
K
S
T
L
F
R
M
I
S
G
Q
E
Q
P
D
S
G
T
I
T
L
G
E
-----------
T
-----------
V
K
L
A
S
V
D
Q
F
-
R
D
-
S
M
D
--
N
S
K
T
V
W
E
E
------------------------------------------------------------------
V
S
G
G
----
L
-------------------------------------
D
I
MKIG
N
--------
T
E
M
P
S
R
A
Y
V
G
R
F
N
F
K
G
----------
V
----
D
-
Q
G
K
R
----------
V
G
E
L
S
G
G
E
R
G
R
L
H
L
A
K
L
L
Q
V
G
G
N
M
L
L
L
D
E
P
T
N
D
L
D
----
I
E
T
L
R
A
L
E
N
A
L
L
E
F
----
P
----
G
C
A
M
V
I
S
H
D
R
W
F
L
D
R
I
A
T
H
I
L
D
Y
Q
D
E
G
K
V
E
F
F
E
G
N
F
T
E
Y
E
E
Y
K
-------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
71.27
34%
-63
- C2 -
3J5S
-
ETTA_ECOLI
D:
[21-538]
--------------------
I
L
K
N
I
S
L
S
F
F
P
G
A
K
I
G
V
L
G
L
N
G
A
G
K
S
T
L
L
R
I
M
A
-
G
-
I
D
K
D
I
E
G
E
--------------
A
R
P
Q
P
-------------
D
I
--
K
I
G
Y
L
P
Q
E
P
Q
-
L
N
P
E
H
T
V
R
E
S
I
EEAVSEVVNA
L
K
R
L
D
E
V
Y
A
L
Y
A
D
P
D
A
D
F
D
K
-----
L
A
A
-
E
Q
----
G
R
L
E
E
I
I
Q
A
H
D
-------------
G
H
N
L
N
V
Q
L
E
R
A
A
D
A
L
R
L
P
D
W
D
--
A
K
I
A
N
L
S
G
G
E
R
R
R
V
A
L
C
R
L
L
L
E
K
P
D
M
L
L
L
D
E
P
T
N
H
L
D
A
---
E
---
S
V
A
W
L
E
R
F
L
H
D
----
F
----
E
---
G
T
-
V
V
A
I
T
H
D
R
Y
F
L
D
N
V
A
G
W
I
L
E
L
D
R
G
E
G
I
P
W
E
G
N
Y
S
S
W
-
L
E
Q
K
D
Q
R
L
A
Q
E
A
S
Q
E
A
A
R
R
K
S
I
E
K
E
L
E
W
V
-----
R
Q
G
T
K
G
R
Q
S
K
G
K
--
A
R
L
A
R
F
E
E
L
N
S
T
E
Y
Q
K
R
N
E
T
N
E
L
-
F
I
P
P
G
P
RL
G
D
K
V
L
E
V
S
N
L
R
K
S
Y
G
-
D
-
R
---
L
L
I
D
D
L
S
F
S
I
P
K
G
A
I
V
G
I
I
G
P
N
G
A
G
K
S
T
L
F
R
M
I
S
G
Q
E
Q
P
D
S
G
T
I
T
L
G
E
-----------
T
-----------
V
K
L
A
S
V
D
Q
F
-
R
D
-
S
M
D
--
N
S
K
T
V
----------------------------------------------------------------------
W
E
E
----
V
-------------------------------------
S
G
----
G
LDIMKIGN
T
E
M
P
S
R
A
Y
V
G
R
F
N
F
K
G
----------
V
----
D
-
Q
G
K
R
----------
V
G
E
L
S
G
G
E
R
G
R
L
H
L
A
K
L
L
Q
V
G
G
N
M
L
L
L
D
E
P
T
N
D
L
D
----
I
E
T
L
R
A
L
E
N
A
L
L
E
F
----
P
----
G
C
A
M
V
I
S
H
D
R
W
F
L
D
R
I
A
T
H
I
L
D
Y
Q
D
E
G
K
V
E
F
F
E
G
N
F
T
E
Y
E
E
Y
K
K
R
T
L
---------------------------------------------------------------------------------------------------------
32
HHSearch
69.17
28%
-102
- C2 -
2IW3
7
EF3A_YEAST
A:
[439-979]
------
C
E
F
S
L
A
Y
--
G
-
A
K
I
L
L
N
K
T
Q
L
R
L
K
R
A
R
R
Y
G
I
C
G
P
N
G
C
G
K
S
T
L
M
R
A
I
A
-
N
G
Q
V
D
---
G
F
--------------
P
T
-
Q
E
-------------
E
C
--
R
T
V
Y
V
E
H
D
I
D
G
T
H
S
D
T
S
V
L
D
F
V
----------
F
E
S
G
V
--------------------------------------------------------
G
T
K
E
A
I
K
D
K
L
I
E
F
G
F
T
D
E
M
I
A
M
P
I
S
A
L
S
G
G
W
K
M
K
L
A
L
A
R
A
V
L
R
N
A
D
I
L
L
L
D
E
P
T
N
H
L
D
T
---
V
---
N
V
A
W
L
V
N
Y
L
N
T
----
C
----
G
---
I
T
-
S
I
T
I
S
H
D
S
V
F
L
D
N
V
C
E
Y
I
I
N
Y
E
G
L
K
L
R
K
Y
K
G
N
F
T
E
F
-
V
K
K
C
P
A
A
-----
K
A
Y
E
E
-------
L
S
N
T
D
L
E
F
-------------------------
K
F
P
E
----
P
G
Y
--
L
-
E
G
V
K
T
K
--
Q
K
A
I
V
K
V
T
N
M
E
F
Q
Y
P
-
G
T
S
--
K
P
Q
I
T
D
I
N
F
Q
C
S
L
S
S
R
I
A
V
I
G
P
N
G
A
G
K
S
T
L
I
N
V
L
T
G
E
L
L
P
T
S
G
E
V
Y
T
H
E
-----------
N
-----------
C
R
I
A
Y
I
K
Q
H
-
A
F
A
H
I
E
SH
L
D
K
T
P
S
E
Y
I
Q
W
R
F
Q
TGEDRETMDRANRQINEND
A
E
A
M
N
K
I
F
K
I
EG
T
P
R
R
IAGIH
S
R
R
K
F
KN
T
Y
E
Y
E
C
S
F
L
L
G
E
N
I
G
M
K
S
E
R
W
V
P
M
M
SVD
N
A
W
I
P
RGELVESH
S
K
M
V
A
E
V
D
M
K
E
A
L
A
S
GQF
R
P
----
L
--------
T
R
K
E
I
E
E
H
C
S
M
L
G
L
D
P
----------
E
----
I
V
S
H
S
R
----------
I
R
G
L
S
G
G
Q
K
V
K
L
V
L
A
A
G
T
W
Q
R
P
H
L
I
V
L
D
E
P
T
N
Y
L
D
----
R
D
S
L
G
A
L
S
K
A
L
K
E
F
----
E
----
G
G
V
I
I
I
T
H
S
A
E
F
T
K
N
L
T
E
E
V
W
A
V
K
D
-
G
R
M
T
P
S
------------------------------------------------------------------------------------------------------------------------
12
PsiBlast_PDB
57.34
28%
-132
- C2 -
1OXU
7
?
A:
[1-200]
M
V
R
I
I
V
K
N
V
S
K
V
F
KK
G
-
K
V
V
A
L
D
N
V
N
I
N
I
E
N
G
E
R
F
G
I
L
G
P
S
G
A
G
K
T
T
F
M
R
I
I
A
-
G
-
L
D
V
P
S
T
G
E
L
Y
FDDRLVASNGKL
I
V
P
P
E
-------------
D
R
--
K
I
G
M
V
F
Q
T
W
A
-
L
Y
P
N
L
T
A
F
E
N
I
----------
A
F
P
L
T
N
M
K
M
S
K
E
E
I
R
K
R
V
E
E
-----
V
A
K
I
-----------------------------------
L
D
I
H
H
V
L
N
-----
H
F
P
-----
R
E
L
S
G
G
Q
Q
Q
R
V
A
L
A
R
A
L
V
K
D
P
S
L
L
L
L
D
E
P
F
S
N
L
D
A
R
M
R
D
---
S
A
R
A
L
V
K
E
V
Q
S
----
R
----
L
---
G
V
T
L
L
V
V
S
H
D
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
13
PsiBlast_PDB
56.48
28%
-132
- C2 -
1OXV
6
?
A:
[1-200]
M
V
R
I
I
V
K
N
V
S
K
V
F
KK
G
-
K
V
V
A
L
D
N
V
N
I
N
I
E
N
G
E
R
F
G
I
L
G
P
S
G
A
G
K
T
T
F
M
R
I
I
A
-
G
-
L
D
V
P
S
T
G
E
L
Y
FDDRLVASNGKL
I
V
P
P
E
-------------
D
R
--
K
I
G
M
V
F
Q
T
W
A
-
L
Y
P
N
L
T
A
F
E
N
I
----------
A
F
P
L
T
N
M
K
M
S
K
E
E
I
R
K
R
V
E
E
-----
V
A
K
I
-----------------------------------
L
D
I
H
H
V
L
N
-----
H
F
P
-----
R
E
L
S
G
G
Q
Q
Q
R
V
A
L
A
R
A
L
V
K
D
P
S
L
L
L
L
D
E
P
F
S
N
L
D
A
R
M
R
D
---
S
A
R
A
L
V
K
E
V
Q
S
----
R
----
L
---
G
V
T
L
L
V
V
S
H
D
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
52
HHSearch
56.12
25%
-129
- C2 -
4YER
4
?
A:
[3-256]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
D
I
I
V
V
E
N
L
V
K
K
F
G
-
D
----
F
E
A
V
K
G
V
S
F
S
V
K
K
G
E
I
F
A
F
L
G
P
N
G
A
G
K
T
T
T
I
H
M
L
T
T
L
L
K
P
T
S
G
K
A
W
V
A
G
HDVLKE
P
R
E
V
-
R
-----------
R
K
I
G
I
V
F
Q
D
-
Q
S
--
L
D
--
R
E
L
T
A
Y
E
N
------------------------------------------------------------------
M
Y
I
H
----
G
-------------------------------------
K
I
Y
G
--
Y
G
G
E
K
----
L
K
K
R
I
L
E
L
L
E
F
V
E
L
L
-----------
E
----
F
-
K
D
K
P
----------
V
K
T
F
S
G
G
M
A
R
R
L
E
I
A
R
S
L
I
H
E
P
E
V
L
F
L
D
E
P
T
I
G
L
D
----
P
H
T
R
A
H
M
W
E
Y
I
S
K
M
K
K
EH
N
----
M
T
I
F
L
T
T
H
Y
M
D
E
A
E
Q
L
A
D
R
V
A
I
I
D
H
-
G
K
I
I
A
-
L
G
T
P
T
E
L
K
R
M
V
-------------------------------------------------------------------------------------------------------------
9
PsiBlast_PDB
55.80
24%
-91
- C2 -
3BK7
2
?
A:
[120-543]
----------------------------------
V
G
I
V
G
P
N
G
T
G
K
T
T
A
V
K
I
L
A
-
G
-
Q
L
I
---
P
N
--------------
L
C
E
D
N
-------------
D
S
--
W
D
N
V
I
R
A
F
R
G
---------
N
E
L
----------
Q
N
Y
F
E
R
L
K
--
N
G
E
I
R
P
V
V
K
P
QYVDL
L
P
K
A
V
K
----
G
K
V
R
E
L
L
K
K
V
D
---
E
V
-------
G
K
F
E
E
V
V
K
E
L
E
L
E
N
V
L
-------
D
R
E
L
H
Q
L
S
G
G
E
L
Q
R
V
A
I
A
A
A
L
L
R
K
A
H
F
Y
F
F
D
E
P
S
S
Y
L
D
I
---
R
Q
R
L
K
V
A
R
V
I
R
R
L
A
N
----
E
----
G
---
K
A
-
V
L
V
V
E
H
D
L
A
V
L
D
Y
L
S
D
V
I
H
V
V
--------
Y
G
E
P
G
V
Y
-------------
G
I
F
S
K
P
K
G
T
R
N
G
I
N
E
F
L
Q
G
Y
L
K
D
E
N
V
R
F
R
P
Y
E
I
R
F
T
K
L
S
E
R
V
D
V
E
R
E
T
L
V
E
------
Y
P
-
R
L
V
K
D
Y
--
G
S
F
K
L
E
V
E
P
G
E
I
R
--------------------
K
G
E
V
I
G
I
V
G
P
N
G
I
G
K
T
T
F
V
K
M
L
A
G
V
E
E
P
T
E
G
K
V
E
W
-------------
D
-----------
L
T
V
A
Y
K
P
Q
Y
I
K
A
-
E
Y
E
--
G
T
---
V
Y
E
------------------------------------------------------------------
L
L
S
K
-------------------------------------------------------------
I
D
S
S
K
L
N
S
N
F
Y
K
----------
T
----
E
-
L
L
K
P
LGIIDLYDRN
V
E
D
L
S
G
G
E
L
Q
R
V
A
I
A
A
T
L
L
R
D
A
D
I
Y
L
L
D
E
P
S
A
Y
L
D
----
V
E
Q
R
L
A
V
S
R
A
I
R
H
L
M
E
K
N
E
----
K
T
A
L
V
V
E
H
D
V
L
M
I
D
Y
V
S
D
R
L
I
-----------------------------------------------------------------------------------------------------------------------------------
49
HHSearch
53.70
28%
-121
- C2 -
2IT1
-
?
A:
[1-215]
M
V
E
I
K
L
E
N
I
V
K
K
F
--
G
-
N
F
T
A
L
N
N
I
N
L
K
I
K
D
G
E
F
M
A
L
L
G
P
S
G
S
G
K
S
T
L
L
Y
T
I
A
-
G
-
I
Y
K
P
T
S
G
K
--------------
I
Y
F
D
E
KDVTELPPK----
D
R
--
N
V
G
L
V
F
Q
N
W
A
-
L
Y
P
H
M
T
V
Y
K
N
I
----------
A
F
P
L
E
L
R
K
A
-------------------------------------------------
P
R
E
E
I
D
K
K
V
R
E
V
A
K
M
L
H
I
D
K
-
L
L
N
R
Y
P
W
Q
L
S
G
G
Q
Q
Q
R
V
A
I
A
R
A
L
V
K
E
P
E
V
L
L
L
D
E
P
L
S
N
L
D
A
---
L
---
L
R
L
E
V
R
A
E
L
K
R
----
L
Q
K
E
L
G
---
I
T
-
T
V
Y
V
T
H
D
Q
A
E
A
L
A
M
A
D
R
I
A
V
I
R
E
G
E
I
L
Q
V
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
14
PsiBlast_PDB
52.76
28%
-126
- C2 -
1OXX
19
?
K:
[1-200]
M
V
R
I
I
V
K
N
V
S
K
V
F
KK
G
-
K
V
V
A
L
D
N
V
N
I
N
I
E
N
G
E
R
F
G
I
L
G
P
S
G
A
G
K
T
T
F
M
R
I
I
A
-
G
-
L
D
V
P
S
T
G
E
LYFDDRLVASNGKL
I
V
P
P
E
-------------
D
R
--
K
I
G
M
V
F
Q
T
W
A
-
L
Y
P
N
L
T
A
F
E
N
I
----------
A
F
P
L
T
N
M
K
M
S
K
E
E
I
R
K
R
V
E
E
-----
V
A
K
I
-----------------------------------
L
D
I
H
H
V
L
N
-----
H
F
P
-----
R
E
L
S
G
A
Q
Q
Q
R
V
A
L
A
R
A
L
V
K
D
P
S
L
L
L
L
D
E
P
F
S
N
L
D
A
RMR
D
---
S
A
R
A
L
V
K
E
V
Q
S
----
R
----
L
---
G
V
T
L
L
V
V
S
H
D
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
PsiBlast_PDB
52.64
24%
-83
- C2 -
3J15
2
?
B:
[106-529]
----------------------------------
V
G
I
V
G
P
N
G
T
G
K
T
T
A
V
K
I
L
A
-
G
-
Q
L
I
---
P
N
--------------
L
C
E
D
N
-------------
D
S
--
W
D
N
V
I
R
A
F
R
G
---------
N
E
L
----------
Q
N
Y
F
E
R
L
K
--
N
G
E
I
R
P
V
V
K
P
QYVD
L
L
P
K
A
V
K
----
G
K
V
R
E
L
L
K
K
V
D
---
E
V
-------
G
K
F
E
E
V
V
K
E
L
E
L
E
N
V
L
-------
D
R
E
L
H
Q
L
S
G
G
E
L
Q
R
V
A
I
A
A
A
L
L
R
K
A
H
F
Y
F
F
D
E
P
S
S
Y
L
D
I
---
R
Q
R
L
K
V
A
R
V
I
R
R
L
A
N
----
E
----
G
---
K
A
-
V
L
V
V
E
H
D
L
A
V
L
D
Y
L
S
D
V
I
H
V
V
--------
Y
G
E
P
G
V
Y
-------------
G
I
F
S
K
P
K
G
T
R
N
G
I
N
E
F
L
Q
G
Y
L
K
D
E
N
V
R
F
R
P
Y
E
I
R
F
T
K
L
S
E
R
V
D
V
E
R
E
T
L
V
E
------
Y
P
-
R
L
V
K
D
Y
--
G
S
F
K
L
E
V
E
P
G
E
I
R
--------------------
K
G
E
V
I
G
I
V
G
P
N
G
I
G
K
T
T
F
V
K
M
L
A
G
V
E
E
P
T
E
G
K
V
E
W
-------------
D
-----------
L
T
V
A
Y
K
P
Q
Y
I
K
A
-
E
Y
E
--
G
T
---
V
Y
E
------------------------------------------------------------------
L
L
S
K
-------------------------------------------------------------
I
D
S
S
K
L
N
S
N
F
Y
K
----------
T
----
E
-
L
L
K
P
LGIIDLYDRN
V
E
D
L
S
G
G
E
L
Q
R
V
A
I
A
A
T
L
L
R
D
A
D
I
Y
L
L
D
E
P
S
A
Y
L
D
----
V
E
Q
R
L
A
V
S
R
A
I
R
H
L
M
E
K
N
E
----
K
T
A
L
V
V
E
H
D
V
L
M
I
D
Y
V
S
D
R
L
I
-----------------------------------------------------------------------------------------------------------------------------------
7
PsiBlast_PDB
52.61
24%
-79
- C2 -
1YQT
4
?
A:
[50-472]
----------------------------------
V
G
I
V
G
P
N
G
T
G
K
S
T
A
V
K
I
L
A
-
G
-
Q
L
I
---
P
N
--------------
L
C
G
D
N
-------------
D
S
--
W
D
G
V
I
R
A
F
R
G
---------
N
E
L
----------
Q
N
Y
F
E
K
L
K
--
N
G
E
I
R
P
V
V
K
P
QYVDL
I
P
K
A
V
K
----
G
K
V
I
E
L
L
K
K
A
D
ETG
K
L
E
E
V
V
K
-------
A
L
E
L
E
N
V
L
E
----------
R
E
I
Q
H
L
S
G
G
E
L
Q
R
V
A
I
A
A
A
L
L
R
N
A
T
F
Y
F
F
D
E
P
S
S
Y
L
D
I
---
R
---
Q
R
L
N
A
A
R
A
I
R
R
----
L
----
S
E
E
G
K
S
-
V
L
V
V
E
H
D
L
A
V
L
D
-
Y
L
S
D
I
I
H
V
V
Y
G
E
P
----
G
V
Y
G
I
F
-
S
Q
P
K
G
T
R
N
G
I
N
E
F
L
R
G
Y
L
K
D
E
N
V
R
F
R
P
Y
------
E
I
K
F
T
K
T
G
E
--
R
--
V
E
I
E
R
E
T
L
V
T
Y
P
------------
R
L
V
K
D
Y
--
G
S
F
R
L
E
V
E
P
G
E
I
K
--------------------
K
G
E
V
I
G
I
V
G
P
N
G
I
G
K
T
T
F
V
K
M
L
A
G
V
E
E
P
T
E
G
K
I
E
W
-------------
D
-----------
L
T
V
A
Y
--
K
P
-
Q
Y
-
I
K
A
--
D
Y
E
G
T
V
Y
E
------------------------------------------------------------------
L
L
S
K
-------------------------------------------------------------
I
D
A
S
K
L
N
S
N
F
Y
K
----------
T
----
E
-
L
L
K
P
LGIIDLYDRE
V
N
E
L
S
G
G
E
L
Q
R
V
A
I
A
A
T
L
L
R
D
A
D
I
Y
L
L
D
E
P
S
A
Y
L
D
----
V
E
Q
R
L
A
V
S
R
A
I
R
H
L
----
M
E
K
N
E
K
T
A
L
V
V
E
H
D
V
L
M
I
D
Y
V
S
D
R
L
------------------------------------------------------------------------------------------------------------------------------------
34
HHSearch
51.92
25%
-128
- C2 -
4Q9H
-
MDR1A_MOUSE
A:
[1028-1260]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
G
N
V
Q
F
S
G
V
V
F
N
Y
P
-
T
-
R
PS
I
P
V
L
Q
G
L
S
L
E
V
K
K
G
Q
T
L
A
L
V
G
S
S
G
C
G
K
S
T
V
V
Q
L
L
E
R
F
Y
D
P
M
A
G
S
V
F
L
D
G
KEIKQLN
V
Q
W
L
R
-----------
A
Q
L
G
I
V
S
Q
E
-
P
I
--
L
F
--
D
-
C
S
I
A
E
N
------------------------------------------------------------------
I
A
Y
G
----
D
-------------------------------------
N
S
R
V
--
V
--------
S
Y
E
E
I
V
R
A
A
K
E
A
N
I
H
Q
F
I
D
S
LP----
D
KYNT
R
-
V
G
D
K
----------
G
T
Q
L
S
G
G
Q
K
Q
R
I
A
I
A
R
A
L
V
R
Q
P
H
I
L
L
L
D
E
A
T
S
A
L
D
----
T
E
S
E
K
V
V
Q
E
A
L
D
K
A
R
E
--
G
----
R
T
C
I
V
I
A
H
R
L
S
T
I
Q
N
-
A
D
L
I
V
V
I
Q
N
-
G
K
V
K
E
-
H
G
T
H
Q
Q
L
L
A
Q
K
-------------------------------------------------------------------------------------------------------------
38
HHSearch
51.69
24%
-135
- C2 -
4F4C
-
PGP1_CAEEL
A:
[1075-1305]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
K
V
I
F
K
N
V
R
F
A
Y
P
-
E
-
R
PE
I
E
I
L
K
G
L
S
F
S
V
E
P
G
Q
T
L
A
L
V
G
P
S
G
C
G
K
S
T
V
V
A
L
L
E
R
F
Y
D
T
L
G
G
E
I
F
I
D
G
-----------
S
EIKTLN
P
E
H
T
R
S
Q
I
A
I
V
S
Q
E
-
P
T
--
L
F
--
D
-
C
S
I
A
E
N
------------------------------------------------------------------
I
I
Y
G
----
L
-------------------------------------
D
P
SS--
V
--------
T
M
A
Q
V
E
E
A
A
R
L
A
N
I
H
N
F
I
A
E
LPEGFE
T
----
R
-
V
G
D
R
----------
G
T
Q
L
S
G
G
Q
K
Q
R
I
A
I
A
R
A
L
V
R
N
P
K
I
L
L
L
D
E
A
T
S
A
L
D
----
T
E
S
E
K
V
V
Q
E
A
L
D
R
A
R
E--
G
----
R
T
C
I
V
I
A
H
R
L
N
T
V
M
N
-
A
D
C
I
A
V
V
S
N
-
G
T
I
I
E
-
K
G
T
H
T
Q
L
M
S
E
--------------------------------------------------------------------------------------------------------------
47
HHSearch
51.26
24%
-121
- C2 -
4YER
4
?
A:
[3-251]
E
D
I
I
V
V
E
N
L
V
K
K
F
--
G
-
D
F
E
A
V
K
G
V
S
F
S
V
K
K
G
E
I
F
A
F
L
G
P
N
G
A
G
K
T
T
T
I
H
M
L
T
-
T
-
L
L
K
P
T
S
G
K
--------------
A
W
V
A
G
HDVLKE
P
R
E
V
---
R
R
--
K
I
G
I
V
F
Q
D
Q
S
-
L
D
R
E
L
T
A
Y
E
N
M
----------
Y
I
H
G
K
I
Y
-
G
Y
------------------------------------------------
G
G
E
K
L
K
K
R
I
L
E
L
L
E
F
V
E
L
L
E
-
F
K
D
K
P
V
K
T
F
S
G
G
M
A
R
R
L
E
I
A
R
S
L
I
H
E
P
E
V
L
F
L
D
E
P
T
I
G
L
D
P
---
H
---
T
R
A
H
M
W
E
Y
I
S
K
----
M
K
K
EH
N
---
M
T
-
I
F
L
T
T
H
Y
M
D
E
A
E
Q
L
A
D
R
V
A
I
I
D
H
G
K
I
I
-
A
L
G
T
P
T
E
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
48
HHSearch
51.23
27%
-118
- C2 -
3FVQ
3
FBPC_NEIG1
A:
[2-231]
T
A
A
L
H
I
G
H
L
S
K
S
F
--
Q
-
N
T
P
V
L
N
D
I
S
L
S
L
D
P
G
E
I
L
F
I
I
G
A
S
G
C
G
K
T
T
L
L
R
C
L
A
-
G
-
F
E
Q
P
D
S
G
E
--------------
I
S
L
S
G
KTIFSKN
T
N
L
P
VR
E
R
--
R
L
G
Y
L
V
Q
E
G
V
-
L
F
P
H
L
T
V
Y
R
N
I
----------
A
Y
G
L
G
N
G
K
G
-------------------------------------------------
R
T
A
Q
E
R
Q
R
I
E
A
M
L
E
L
T
G
I
S
E
-
L
A
G
R
Y
P
H
E
L
S
G
G
Q
Q
Q
R
A
A
L
A
R
A
L
A
P
D
P
E
L
I
L
L
D
E
P
F
S
A
L
D
E
---
Q
---
L
R
R
Q
I
R
E
D
M
I
A
A
L
R
A
N
----
G
---
K
S
-
A
V
F
V
S
H
D
R
E
E
A
L
Q
Y
A
D
R
I
A
V
M
K
Q
G
R
I
L
-
Q
T
A
S
P
H
E
L
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10
PsiBlast_PDB
51.09
28%
-125
- C2 -
1OXS
16
?
C:
[1-200]
M
V
R
I
I
V
K
N
V
S
K
V
F
KK
G
-
K
V
V
A
L
D
N
V
N
I
N
I
E
N
G
E
R
F
G
I
L
G
P
S
G
A
G
K
T
T
F
M
R
I
I
A
-
G
-
L
D
V
P
S
T
G
E
LYFDDRLVASNGKL
I
V
P
P
E
-------------
D
R
--
K
I
G
M
V
F
Q
T
W
A
-
L
Y
P
N
L
T
A
F
E
N
I
----------
A
F
P
L
T
N
M
K
M
S
K
E
E
I
R
K
R
V
E
E
-----
V
A
K
I
-----------------------------------
L
D
I
H
H
V
L
N
-----
H
F
P
-----
R
E
L
S
G
G
Q
Q
Q
R
V
A
L
A
R
A
L
V
K
D
P
S
L
L
L
L
D
E
P
F
S
N
L
D
A
RMR
D
---
S
A
R
A
L
V
K
E
V
Q
S
----
R
----
L
---
G
V
T
L
L
V
V
S
H
D
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
PsiBlast_PDB
50.91
25%
-100
- C2 -
2IX3
6
EF3A_YEAST
A:
[440-743]
-------
E
F
S
L
A
Y
--
G
-
A
K
I
L
L
N
K
T
Q
L
R
L
K
R
A
R
R
Y
G
I
C
G
P
N
G
C
G
K
S
T
L
M
R
A
I
A
N
G
-
Q
V
D
-------------------------------------------
G
F
P
T
Q
------------
E
E
C
----------
R
T
V
Y
-----
V
E
H
D
I
D
G
T
H
----------
S
D
T
----
S
V
L
D
F
V
F
E
S
G
V
---
G
T
K
E
A
I
K
D
K
------------
L
I
E
F
G
F
T
D
E
M
I
A
M
P
I
S
A
L
S
G
G
W
K
M
K
L
A
L
A
R
A
V
L
R
N
A
D
I
L
L
L
D
E
P
T
N
H
L
D
T
---
V
---
N
V
A
W
L
V
N
Y
L
N
T
----
C
----
G
---
I
T
-
S
I
T
I
S
H
D
S
V
F
L
D
N
V
C
E
Y
I
I
N
Y
E
G
L
K
L
R
K
Y
K
G
N
F
T
E
F
-
V
K
K
C
P
A
A
-----
K
A
Y
E
E
L
S
N
T
D
L
E
F
K
-
F
P
E
P
G
Y
L
E
G
V
K
T
K
Q
----------------------------------------
K
A
I
V
K
V
T
N
M
E
F
Q
Y
P
G
T
-
S
--
K
P
Q
I
T
D
I
N
F
Q
C
S
L
S
S
R
I
A
V
I
G
P
N
G
A
G
K
S
T
L
I
N
V
L
T
G
E
L
L
P
T
S
G
E
V
Y
T
H
E
-----------
N
-----------
C
R
I
A
Y
I
K
Q
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
37
HHSearch
50.41
20%
-86
- C2 -
3OZX
5
?
A:
[4-463]
-------
E
V
I
H
R
Y
--
K
V
N
G
F
K
L
F
G
L
P
T
-
P
K
N
N
T
I
L
G
V
L
G
K
N
G
V
G
K
T
T
V
L
K
I
L
A
-
G
-
E
I
I
P
N
F
G
D
--------------
P
N
S
K
V
G
K
D
E
V
L
K
R
F
R---
G
K
--
E
I
Y
N
Y
F
K
E
L
Y
--
S
N
E
L
K
I
V
H
K
I
----------
Q
Y
V
E
Y
A
-
S
K
F
---------------------------
L
K
------
G
---
T
V
N
E
I
---
L
T
K
I
D
E
R
G
K
K
D
E
V
K
E
L
L
N
M
T
N
-
L
W
N
K
D
A
N
I
L
S
G
G
G
L
Q
R
L
L
V
A
A
S
L
L
R
E
A
D
V
Y
I
F
D
Q
P
S
S
Y
L
D
V
---
R
---
E
R
M
N
M
A
K
A
I
R
E
----
L
L
K--
N
---
K
Y
-
V
I
V
V
D
H
D
L
I
V
L
D
Y
L
T
D
L
I
H
I
I
Y
-
G
E
S
S
V
Y
-
G
R
V
S
K
S
-
Y
A
A
R
V
G
---------------
I
---
N
N
F
L
K
G
Y
L
P
A
E
N
M
K
I
R
P
D
E
I
K
--
F
M
L
K
----------------------------
L
K
T
K
M
K
W
T
K
I
I
K
K
L
G
-
D
-----
F
Q
L
V
V
D
N
G
E
A
K
E
G
E
I
I
G
I
L
G
P
N
G
I
G
K
T
T
F
A
R
I
L
V
G
E
I
T
A
D
E
G
S
V
T
P
E
K
-----------------------
Q
I
L
S
Y
K
P
Q
R
-
I
F
--
P
N
--
Y
D
G
T
V
Q
Q
Y
------------------------------------------------------------------
L
E
N
A
----
S
-------------------------------------
K
D
ALS-
T
--------
S
S
W
F
F
E
E
V
T
K
R
L
N
L
H
-----------
R
----
L
-
L
E
S
N
----------
V
N
D
L
S
G
G
E
L
Q
K
L
Y
I
A
A
T
L
A
K
E
A
D
L
Y
V
L
D
Q
P
S
S
Y
L
D
----
V
E
E
R
Y
I
V
A
K
A
I
K
R
V
T
R
E
R
K
----
A
V
T
F
I
I
D
H
D
L
S
I
H
D
Y
I
A
D
R
I
I
V
F
K
G
-
E
P
----------------------------------------------------------------------------------------------------------------------------
17
PsiBlast_PDB
50.11
23%
-79
- C2 -
4CRM
3
RLI1_YEAST
P:
[106-539]
----------------------------------
L
G
L
V
G
T
N
G
I
G
K
S
T
A
L
K
I
L
A
-
G
-
K
Q
K
P
N
L
G
R
--------------
F
D
D
P
P
-------------
E
W
QE
I
I
K
Y
F
-
R
G
S
E
-
L
Q
N
Y
F
T
K
M
L
E
---------------
D
D
I
K
A
I
I
K
P
Q
Y
V
D
N
I
P
-----
R
A
I
K
G
P
VQKV
G
E
L
L
K
L
--------
R
M
E
K
S
P
E
D
V
K
R
Y
I
K
I
L
Q
L
E
N
V
L
----------
K
R
D
I
E
K
L
S
G
G
E
L
Q
R
F
A
I
G
M
S
C
V
Q
E
A
D
V
Y
M
F
D
E
P
S
S
Y
L
D
V
---
K
QRL
N
A
A
Q
I
I
R
S
L
L
A
----
P
----
T
---
K
Y
-
V
I
C
V
E
H
D
L
S
V
L
D
Y
L
S
D
F
V
C
I
I
--------
Y
G
V
P
S
V
Y
G
V
V
T
L
P
A
S
V
R
E
G
I
N
I
-------------
F
L
D
G
H
I
P
--
A
E
N
L
R
F
R
T
E
A
--
L
Q
F
R
I
A
D
A
T
E
D
L
Q
N
D
S
A
S
R
A
F
S
Y
P
S
L
K
K
T
Q
--
G
D
F
V
L
N
V
E
E
G
E
F
S
--------------------
D
S
E
I
L
V
M
M
G
E
N
G
T
G
K
T
T
L
I
K
L
L
A
G
A
L
K
P
D
E
G
------------------------------------
Q
D
-
I
P
-
K
L
N
--
V
S
M
K
P
-
Q
K
------------------------------------------------------------------
I
A
P
K
----
F
-------------------------------------
P
G
TVRQ
L
--------
F
F
K
K
I
R
G
Q
F
L
N
P
Q
F
Q
-----------
T
----
D
-
V
V
K
P
LRIDDIIDQE
V
Q
H
L
S
G
G
E
L
Q
R
V
A
I
V
L
A
L
G
I
P
A
D
I
Y
L
I
D
E
P
S
A
Y
L
D
SEQR
I
I
C
S
K
V
I
R
R
F
I
L
H
N
----
K
----
K
T
A
F
I
V
E
H
D
F
I
M
A
T
Y
L
A
D
K
V
I
-----------------------------------------------------------------------------------------------------------------------------------