@TOME V2.3
(Nov 2016)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : bsu06180: (2016-06-09 )
MSIIGRFKDIMSANINALLDKAENPEKMVDQYLRNMNSDLAKVKAETAAVMAEEQRAKREYHECQADMEKMESYAMKALQAGNESDARKFLERKTSLESKLSELQAANQIAATNAAQMRKMHDKLVSDIGELEARKNMIKAKWAVAKTQERMNKLGASVSSTSQSMSAFGRMEDKVNKALDQANAMAELNSAPQDDMADLSAKYDTGGSSQVDDELAALKAKMMLDK
Atome Classification :
(20 SA)
------------------------------------------------------------------------------------------------------------------------------------------.........10........20....--....30......---------..40..------......50..-......---------60...--------------.....70.--------.......80........90........100......-----.110.......120.......130.---......140.......150.......160...----....170.......180.......190.......200.......210.......220.....------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
------------------------------------------------------------------------------------------------------------------------------------------M
S
I
I
G
R
F
K
D
I
M
S
A
N
I
N
A
L
LDKAE
N
P
--
E
K
M
V
D
Q
Y
L
R
N
MN---------
S
D
L
A
K
V
------
K
A
E
T
A
A
V
M
A
E
-
E
Q
R
A
K
R
---------
E
Y
H
E
C
--------------
Q
A
D
M
E
K
M
E
--------
S
Y
A
M
K
A
L
QAG
N
E
S
D
A
R
K
F
L
E
R
K
T
S
L
E
S
K
L
S
E
L
Q
A
A
N
-----
Q
IAAT
N
A
A
Q
M
R
K
M
H
D
K
L
V
S
D
I
G
E
L
E
---
A
R
K
N
M
I
K
A
K
W
A
V
A
K
T
Q
E
R
M
N
K
LGASVS
S
T
S
Q
S
----
M
S
A
F
G
R
M
E
D
K
V
N
K
A
L
D
Q
A
N
A
M
A
ELNSAPQ
D
D
M
A
D
L
S
AKYDTGGSS
Q
V
D
D
E
L
A
A
L
K
A
K
M
MLDK------------------
21
HHSearch
77.17
30%
-42
- C7 -
4WHE
1
PSPA_ECOLI
A:
[3-142]
--------------------------------------------------------------------------------------------------------------------------------------------
I
F
S
R
F
A
D
I
V
N
A
N
I
N
A
L
L
E
---
D
P
--
Q
K
L
V
R
L
M
I
Q
E
M
E
---------
D
T
L
V
E
V
------
R
S
T
S
A
R
A
L
A
E
-
K
K
Q
L
T
R
---------
R
I
E
Q
A
--------------
S
A
R
E
V
E
W
Q
--------
E
K
A
E
L
A
L
L
K
E
R
E
D
L
A
R
A
A
L
I
E
K
Q
K
L
T
D
L
I
K
S
L
E
H
E
V
-----
T
L
V
D
D
T
L
A
R
M
K
K
E
I
G
E
L
E
N
K
L
S
E
T
R
---
A
R
Q
Q
A
L
M
L
R
-----------------------------------------------------------------------------------------------------------
43
Fugue
76.48
29%
-41
- C7 -
4WHE
1
PSPA_ECOLI
A:
[3-142]
--------------------------------------------------------------------------------------------------------------------------------------------
I
F
S
R
F
A
D
I
V
N
A
N
I
N
A
L
L
---
E
D
P
--
Q
K
L
V
R
L
M
I
Q
E
M
E
---------
D
T
L
V
E
V
------
R
S
T
S
A
R
A
L
A
E
-
K
K
Q
L
T
R
---------
R
I
E
Q
A
--------------
S
A
R
E
V
E
W
Q
--------
E
K
A
E
L
A
L
L
K
E
R
E
D
L
A
R
A
A
L
I
E
K
Q
K
L
T
D
L
I
K
S
L
E
H
E
V
-----
T
L
V
D
D
T
L
A
R
M
K
K
E
I
G
E
L
E
N
K
L
S
E
T
R
---
A
R
Q
Q
A
L
M
L
R
-----------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
74.11
33%
-38
- C7 -
4WHE
1
PSPA_ECOLI
A:
[3-126]
--------------------------------------------------------------------------------------------------------------------------------------------
I
F
S
R
F
A
D
I
V
N
A
N
I
N
A
L
L
E
---
D
P
--
Q
K
L
V
R
L
M
I
Q
E
M
E
---------
D
T
L
V
E
V
------
R
S
T
S
A
R
A
L
A
E
-
K
K
Q
L
T
R
---------
R
I
E
Q
A
--------------
S
A
R
E
V
E
W
Q
--------
E
K
A
E
L
A
L
L
K
E
R
E
D
L
A
R
A
A
L
I
E
K
Q
K
L
T
D
L
I
K
S
L
E
H
E
V
-----
T
L
V
D
D
T
L
A
R
M
K
K
-------
E
I
G
E
L
E
-----------------------------------------------------------------------------------------------------------------------
16
PsiBlast_PDB
61.99
19%
-48
- C7 -
5FI4
1
B:
[164-273]
-------------------------------------------------------------------------------------------------------------------------------------------------------------
E
K
S
R
E
Y
--
D
R
L
Y
E
E
Y
T
R
T
S
Q
-------------
E
I
------
Q
M
K
R
T
A
I
E
A
F
-
N
E
T
I
K
I
---------
F
E
E
Q
C
--------------
Q
T
Q
E
R
Y
S
K
--------
E
Y
I
E
K
F
K
R
E
G
N
E
K
E
I
Q
R
I
M
H
N
Y
D
K
L
K
S
R
I
S
E
I
I
D
S
R
-----
R
-------
R
L
E
E
D
L
K
K
Q
A
A
E
Y
R
E
I
D
---
K
R
M
N
S
I
K
-------------------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
61.90
19%
-50
- C7 -
4YKN
-
P85A_HUMAN (first)
A:
[148-353]
-------------------------------------------------------------------------------------------------------------------------------------------------------------
E
K
S
R
E
Y
--
D
R
L
Y
E
E
Y
T
R
T
S
Q
-------------
E
I
------
Q
M
K
R
T
A
I
E
A
F
-
N
E
T
I
K
I
---------
F
E
E
Q
C
--------------
Q
T
Q
E
R
Y
S
K
--------
E
Y
I
E
K
F
K
R
E
G
N
E
K
E
I
Q
R
I
M
H
N
Y
D
K
L
K
S
R
I
S
E
I
I
D
S
R
-----
R
-------
R
L
E
E
D
L
K
K
Q
A
A
E
Y
R
E
I
D
---
K
R
M
N
S
I
K
-------------------------------------------------------------------------------------------------------------
12
PsiBlast_PDB
61.73
19%
-46
- C7 -
4A55
-
B:
[137-256]
-------------------------------------------------------------------------------------------------------------------------------------------------------------
E
K
S
R
E
Y
--
D
R
L
Y
E
E
Y
T
R
T
S
Q
-------------
E
I
------
Q
M
K
R
T
A
I
E
A
F
-
N
E
T
I
K
I
---------
F
E
E
Q
C
--------------
Q
T
Q
E
R
Y
S
K
--------
E
Y
I
E
K
F
K
R
E
G
N
E
K
E
I
Q
R
I
M
H
N
Y
D
K
L
K
S
R
I
S
E
I
I
D
S
R
-----
R
-------
R
L
E
E
D
L
K
K
Q
A
A
E
Y
R
E
I
D
---
K
R
M
N
S
I
K
-------------------------------------------------------------------------------------------------------------
6
PsiBlast_PDB
61.66
19%
-40
- C7 -
3HHM
-
B:
[137-246]
-------------------------------------------------------------------------------------------------------------------------------------------------------------
E
K
S
R
E
Y
--
D
R
L
Y
E
E
Y
T
R
T
S
Q
-------------
E
I
------
Q
M
K
R
T
A
I
E
A
F
-
N
E
T
I
K
I
---------
F
E
E
Q
C
--------------
Q
T
Q
E
R
Y
S
K
--------
E
Y
I
E
K
F
K
R
E
G
N
E
K
E
I
Q
R
I
M
H
N
Y
D
K
L
K
S
R
I
S
E
I
I
D
S
R
-----
R
-------
R
L
E
E
D
L
K
K
Q
A
A
E
Y
R
E
I
D
---
K
R
M
N
S
I
K
-------------------------------------------------------------------------------------------------------------
7
PsiBlast_PDB
61.08
19%
-54
- C7 -
3HIZ
-
P85A_HUMAN
B:
[458-567]
-------------------------------------------------------------------------------------------------------------------------------------------------------------
E
K
S
R
E
Y
--
D
R
L
Y
E
E
Y
T
R
T
S
Q
-------------
E
I
------
Q
M
K
R
T
A
I
E
A
F
-
N
E
T
I
K
I
---------
F
E
E
Q
C
--------------
Q
T
Q
E
R
Y
S
K
--------
E
Y
I
E
K
F
K
R
E
G
N
E
K
E
I
Q
R
I
M
H
N
Y
D
K
L
K
S
R
I
S
E
I
I
D
S
R
-----
R
-------
R
L
E
E
D
L
K
K
Q
A
A
E
Y
R
E
I
D
---
K
R
M
N
S
I
K
-------------------------------------------------------------------------------------------------------------
10
PsiBlast_PDB
60.29
19%
-26
- C7 -
4L2Y
1
B:
[167-276]
-------------------------------------------------------------------------------------------------------------------------------------------------------------
E
K
S
R
E
Y
--
D
R
L
Y
E
E
Y
T
R
T
S
Q
-------------
E
I
------
Q
M
K
R
T
A
I
E
A
F
-
N
E
T
I
K
I
---------
F
E
E
Q
C
--------------
Q
T
Q
E
R
Y
S
K
--------
E
Y
I
E
K
F
K
R
E
G
N
E
K
E
I
Q
R
I
M
H
N
Y
D
K
L
K
S
R
I
S
E
I
I
D
S
R
-----
R
-------
R
L
E
E
D
L
K
K
Q
A
A
E
Y
R
E
I
D
---
K
R
M
N
S
I
K
-------------------------------------------------------------------------------------------------------------
17
PsiBlast_PDB
59.71
19%
-36
- C7 -
4JPS
-
B:
[158-267]
-------------------------------------------------------------------------------------------------------------------------------------------------------------
E
K
S
R
E
Y
--
D
R
L
Y
E
E
Y
T
R
T
S
Q
-------------
E
I
------
Q
M
K
R
T
A
I
E
A
F
-
N
E
T
I
K
I
---------
F
E
E
Q
C
--------------
Q
T
Q
E
R
Y
S
K
--------
E
Y
I
E
K
F
K
R
E
G
N
E
K
E
I
Q
R
I
M
H
N
Y
D
K
L
K
S
R
I
S
E
I
I
D
S
R
-----
R
-------
R
L
E
E
D
L
K
K
Q
A
A
E
Y
R
E
I
D
---
K
R
M
N
S
I
K
-------------------------------------------------------------------------------------------------------------
13
PsiBlast_PDB
59.58
19%
-33
- C7 -
4OVU
-
P85A_HUMAN
B:
[458-567]
-------------------------------------------------------------------------------------------------------------------------------------------------------------
E
K
S
R
E
Y
--
D
R
L
Y
E
E
Y
T
R
T
S
Q
-------------
E
I
------
Q
M
K
R
T
A
I
E
A
F
-
N
E
T
I
K
I
---------
F
E
E
Q
C
--------------
Q
T
Q
E
R
Y
S
K
--------
E
Y
I
E
K
F
----
N
E
K
E
I
Q
R
I
M
H
N
Y
D
K
L
K
S
R
I
S
E
I
I
D
S
R
-----
R
-------
R
L
E
E
D
L
K
K
Q
A
A
E
Y
R
E
I
D
---
K
R
M
N
S
I
K
-------------------------------------------------------------------------------------------------------------
15
PsiBlast_PDB
59.49
19%
-36
- C7 -
4WAF
-
B:
[164-273]
-------------------------------------------------------------------------------------------------------------------------------------------------------------
E
K
S
R
E
Y
--
D
R
L
Y
E
E
Y
T
R
T
S
Q
-------------
E
I
------
Q
M
K
R
T
A
I
E
A
F
-
N
E
T
I
K
I
---------
F
E
E
Q
C
--------------
Q
T
Q
E
R
Y
S
K
--------
E
Y
I
E
K
F
K
R
E
G
N
E
K
E
I
Q
R
I
M
H
N
Y
D
K
L
K
S
R
I
S
E
I
I
D
S
R
-----
R
-------
R
L
E
E
D
L
K
K
Q
A
A
E
Y
R
E
I
D
---
K
R
M
N
S
I
K
-------------------------------------------------------------------------------------------------------------
9
PsiBlast_PDB
58.91
19%
-32
- C7 -
4L23
1
B:
[167-276]
-------------------------------------------------------------------------------------------------------------------------------------------------------------
E
K
S
R
E
Y
--
D
R
L
Y
E
E
Y
T
R
T
S
Q
-------------
E
I
------
Q
M
K
R
T
A
I
E
A
F
-
N
E
T
I
K
I
---------
F
E
E
Q
C
--------------
Q
T
Q
E
R
Y
S
K
--------
E
Y
I
E
K
F
K
R
E
G
N
E
K
E
I
Q
R
I
M
H
N
Y
D
K
L
K
S
R
I
S
E
I
I
D
S
R
-----
R
-------
R
L
E
E
D
L
K
K
Q
A
A
E
Y
R
E
I
D
---
K
R
M
N
S
I
K
-------------------------------------------------------------------------------------------------------------
8
PsiBlast_PDB
58.10
19%
-34
- C7 -
4L1B
-
B:
[167-276]
-------------------------------------------------------------------------------------------------------------------------------------------------------------
E
K
S
R
E
Y
--
D
R
L
Y
E
E
Y
T
R
T
S
Q
-------------
E
I
------
Q
M
K
R
T
A
I
E
A
F
-
N
E
T
I
K
I
---------
F
E
E
Q
C
--------------
Q
T
Q
E
R
Y
S
K
--------
E
Y
I
E
K
F
K
R
E
G
N
E
K
E
I
Q
R
I
M
H
N
Y
D
K
L
K
S
R
I
S
E
I
I
D
S
R
-----
R
-------
R
L
E
E
D
L
K
K
Q
A
A
E
Y
R
E
I
D
---
K
R
M
N
S
I
K
-------------------------------------------------------------------------------------------------------------
46
Fugue
55.53
16%
-137
- C3 -
4XGC
1
ORC5_DROME
E:
[1-458]
M
E
A
I
C
S
S
L
E
PLFPCR
E
A
A
I
E
T
L
G
E
L
IGDSSETYPS
A
I
Y
L
F
G
H
SGTG
K
T
A
L
T
R
A
F
L
K
E
C
G
K
RQN
V
R
T
A
H
L
N
AIECYT
T
K
I
M
L
E
I
L
L
D
S
L
A
PDQGDALKVDN
M
L
D
F
V
E
Q
L
R
R
Q
AATRVED
Q
G
F
L
I
A
V
D
NAERLRDMDA
N
V
L
P
V
L
L
R
L
Q
E
L
T
N
L
N
L
C
V
I
L
L
S
Q
L
P
F
--
E
K
F
---
Y
N
K
T
G
L
---------
S
E
I
V
C
L
H
L
A
Q
YN
K
A
E
T
Q
R
I
L
G
S
D
F
Q
Q
V
R
N
---------
Q
L
L
E
Q
--------------
K
K
R
L
E
I
C
Q
E
A
VT
E
D
F
Y
N
N
Y
L
N
L
F
L
S
V
F
Y
K
A
C
R
D
V
P
E
L
Q
L
T
A
R
K
C
L
S
T
Y
L
E
P
V
LDGTS
R
L
W
R
H
I
A
G
P
L
R
S
A
L
T
Q
I
Y
M
R
I
E
S
L
E
L
P
Y
Y
A
K
F
L
L
I
A
A
F
L
A
S
H
N
A
A
K
Q
D
K
R
L
F
S
T
T
L
G
P
K
S
----
F
S
-
I
D
R
L
L
A
I
F
Y
A
I
L
E
E
K
V
G
L
T
C
N
L
L
S
Q
I
S
T
L
V
H
L
N
L
L
S
F
V
S
G
E
Q
N
I
M
E
G
S
A
R
L
Q
C
T
I
G
L
E
F
V
L
Q
I
G
K
V
V
GFNVRQYLCD
14
PsiBlast_PDB
54.82
19%
6
- C7 -
4OVV
1
B:
[137-250]
-------------------------------------------------------------------------------------------------------------------------------------------------------------
E
K
S
R
E
Y
--
D
R
L
Y
E
E
Y
T
R
T
S
Q
-------------
E
I
------
Q
M
K
R
T
A
I
E
A
F
-
N
E
T
I
K
I
---------
F
E
E
Q
C
--------------
Q
T
Q
E
R
Y
S
K
--------
E
Y
I
E
K
-----
N
E
K
E
I
Q
R
I
M
H
N
Y
D
K
L
K
S
R
I
S
E
I
I
D
S
R
-----
R
-------
R
L
E
E
D
L
K
K
Q
A
A
E
Y
R
E
I
D
---
K
R
M
N
S
I
K
-------------------------------------------------------------------------------------------------------------
11
PsiBlast_PDB
54.63
19%
-37
- C7 -
2RD0
-
P85A_HUMAN
B:
[458-576]
-------------------------------------------------------------------------------------------------------------------------------------------------------------
E
K
S
R
E
Y
--
D
R
L
Y
E
E
Y
T
R
T
S
Q
-------------
E
I
------
Q
M
K
R
T
A
I
E
A
F
-
N
E
T
I
K
I
---------
F
E
E
Q
C
--------------
Q
T
Q
E
R
Y
S
K
--------
E
Y
I
-----------
I
Q
R
I
M
H
N
Y
D
K
L
K
S
R
I
S
E
I
I
D
S
R
-----
R
-------
R
L
E
E
D
L
K
K
Q
A
A
E
Y
R
E
I
D
---
K
R
M
N
S
I
K
-------------------------------------------------------------------------------------------------------------
22
HHSearch
49.93
15%
-27
- C7 -
5FD9
-
SNF7_YEAST
A:
[20-93]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
K
A
I
V
R
L
R
E
H
-
I
N
L
L
S
K
---------
K
Q
S
H
L
--------------
R
T
Q
I
T
N
Q
E
--------
N
E
A
R
I
F
L
T
K
G
N
K
V
M
A
K
N
A
L
K
K
K
K
T
I
E
Q
L
L
S
K
V
E
G
T
M
-----
E
S
M
E
Q
Q
L
F
S
---------------------------------------------------------------------------------------------------------------------------------------
44
Fugue
48.92
14%
11
- C6 -
4BND
4
?
A:
[1-252]
-----------------------------------------------------------------------------------------------------------------------------------------------
K
M
K
K
I
L
S
F
D
I
D
N
T
L
N
E
P
K
M
P
IF
P
E
M
A
E
L
L
A
T
L
S
Q
K
Y
I
I
A
P
I
S
G
Q
K
Y
D
Q
F
------
L
I
Q
I
I
N
N
L
P
E
-
S
A
N
L
D
N
FHLFVAQGT
Q
Y
Y
A
H
K
AG
E
W
K
Q
VFNYALT
D
E
Q
A
N
A
I
M
--------
G
A
L
E
K
A
A
K
E
L
G
H
W
D
E
S
V
L
L
P
G
D
E
I
N
E
N
R
E
S
-----------
M
I
A
Y
S
A
I
G
Q
K
A
G
V
E
A
K
Q
A
W
D
--
P
D
M
---
T
K
R
N
E
I
A
K
L
A
S
Q
Y
A
P
E
F
E
F
E
V
A
G
T
T
T
I
N
G
F
V
P
GQN
K
E
F
G
M
N
H
L
M
E
E
L
N
V
T
K
E
E
I
L
Y
F
G
D
M
T
Q
P
G
G
N
D
Y
P
V
V
Q
M
G
I
E
T
I
T
V
R
D
W
K
E
T
A
A
I
L
K
A
I
I
A
M
E
E
------------------
37
HHSearch
48.55
19%
-371
- C7 -
3HE5
-
?
A:
[6-42]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
E
N
E
V
A
S
L
E
N
E
N
-----
E
T
L
K
K
K
N
L
H
K
K
D
L
I
A
Y
L
E
K
E
I
A
N
L
R
-----------------------------------------------------------------------------------------------------------------------