@TOME V2.3
(Nov 2016)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : bsu06190: (2016-06-09 )
MIISYKCPNCGSDMAFDSETGSLSCSSCGRQDNIESLPKENIAARFSDDEAKEYQCKNCGAVLITEAETTATTCSFCGGAAILADRLSGHLAPAKVIPFTISKQEAEQAFRKWCKKGLLTPRGFMSADRIKSITGMYIPFWMFDLNSEVQVRANCTRVHQYEEGDYICTETEHFEAFRDINLDYLKIPVDASEKMKDELMDKLEPYSYEELKDFQTAYLAGYIAEKYNYTDEELFPRAKEKISSYIDSYIHSTFSGYTSVNVRDKHIHTKNVNSFYVLLPVWMVSYDYERAEHIFAMNGQTGKVVGKPPISRGKVAAWFSGIAGGTFLALKLVSLMMGGGF
Atome Classification :
(20 SA)
---.........10-.......--.20.........30.......-----------.40..------------..-....50......---..60......--.--.70........80........90........100........110.......120...----....130--........140----........150.......160...-....170--.....-..180.......190.......200.......210.......220.......230----........240.......250.......260.......270--------.-........280..-.....290.......300....-...310.......320.----......330.......340------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
---
M
I
I
S
Y
KCPNCG-SDMAFDS--ET-G
S
L
S
C
S
SCGRQD
N
I
E
SL
P
-----------
K
E
N
I
A
------------AR-FSDDE
A
K
E
Y
QCK---NC
G
A
V
L
I
TEA--E--T
T
A
T
T
C
SFCG
G
A
A
I
L
A
D
R
LSGHLAP
A
K
V
I
P
F
TI-
S
K
Q
E
A
E
Q
A
F
R
K
W
C
KKGLLTPRGFM----
S
A
D
R
I
K
---
S
I
TG
M
Y
I
P
F
W
-----
M
FDLNS
E
V
Q
V
R
AN
C
T
R
V
H
Q
YEEG
D
-
Y
I
CTE
T
E
--
H
F
E
A
F
-
R
DIN
L
D
Y
L
KIPVD
A
S
E
K
M
K
D
E
L
M
D
K
LEPY
S
Y
E
E
L
K
D
F
Q
T
A
Y
L
A
G
Y
I
A
E
KYNY
T
D
-----
E
E
L
F
P
R
A
K
E
K
I
S
S
Y
I
D
S
Y
I
H
S
TFSGY
T
S
V
N
V
RD
K
H
I
HTK----------N-V
N
S
F
Y
V
L
L
P
V
W
M
V-SY
D
Y
ERA
E
H
I
F
A
MNGQTG
K
V
VG-KPPISR
G
K
V
A
A
W
F
SGIA----G
G
T
F
L
A
L
K
L
V
S
L
M
MGGGF-------------------------------------------
47
Fugue
74.82
16%
-126
- C1 -
4XGC
1
ORC5_DROME
E:
[1-458]
M
E
A
I
C
S
S
L
E
P
L
F
P
C
-
R
E
A
A
I
E
T
--
L
G
-
E
L
I
G
D
S
S
E
T
Y
P
S
A
I
Y
L
F
G
H
SGTG------
K
T
A
L
T
------------
R
A
-
F
L
K
E
C
G
K
R
Q
N
-----------
V
R
T
A
--
H
--
L
N
A
I
E
C
Y
---
T
T
K
I
M
L
E
I
L
L
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L
A
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D
A
L
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D
N
M
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F
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Q
L
R
R
Q
A
A
T
R
V
-
E
D
Q
G
F
L
I
A
V
D
N
A
E
R
L
R
---
D
M
D
A
N
V
L
P
V
L
L
R
LQE
L
T
N
L
N
L
C
V
I
L
L
S
Q
L
P
F
E
K
F
Y
N
K
T
G
-
L
S
E
I
V
C
L
--
H
L
A
Q
Y
N
K
A
E
T
Q
R
I
L
G
S
D
F
Q
Q
V
R
N
Q
L
L
E
Q
K
K
R
L
E
I
C
Q
E
A
V
T
E
D
F
Y
N
N
Y
L
N
L
F
L
S
V
F
Y
K
A
C
R
D
V
---
P
E
L
Q
L
T
A
R
K
C
L
S
T
Y
L
E
P
V
L
D
G
T
S
R
L
W
R
H
I
A
G
P
L
R
S
A
L
T
Q
IYMRIES
L
E
L
P
-
Y
Y
A
K
F
L
L
I
A
A
F
L
A
-
S
H
N
A
A
K
Q
D
K
R
L
F
-----
S
T
T
L
G
-
P
K
S
F
S
I
D
R
L
L
A
I
F
Y
A
I
L
EEKV
G
L
T
C
N
L
L
S
Q
I
S
T
L
V
H
L
N
L
L
S
F
V
S
GEQNIME
G
S
A
R
L
Q
C
T
I
G
L
E
F
V
L
Q
I
G
K
V
V
GFNVRQYLCD
42
Fugue
70.81
16%
-81
- C4 -
4O6M
13
?
A:
[29-370]
---
M
R
L
A
Y
V
K
-----
N
H
E
I
Y
G
E
--
K
L
-
L
G
L
T
----
L
R
E
R
I
E
K
T
L
Q
-----------
R
A
G
F
D
------------
V
R
-
F
F
D
E
L
S
L
E
---
E
---
A
E
D
Y
L
I
I
L
E
P
--
V
--
L
I
L
E
R
D
L
L
L
E
G
R
K
I
L
V
S
D
-----------
G
F
T
V
-
G
Y
F
F
G
G
D
F
R
T
V
F
D
G
N
L
Q
S
S
I
E
K
Y
L
----
S
L
N
N
L
E
---
S
Y
E
-----
I
W
-----
A
I
K
L
S
N
D
N
L
K
T
A
E
K
L
L
L
S
S
L
I
D
G
--
W
I
A
R
E
I
N
--
R
K
V
S
L
-
R
I
S
R
L
L
A
-
D
T
S
V
T
P
N
Q
I
T
V
F
S
F
F
L
S
L
V
G
S
A
L
F
L
L
N
S
Y
L
T
T
L
L
A
G
V
I
I
Q
L
H
S
I
I
D
G
C
D
G
E
I
A
R
L
K
F
M
E
S
K
Y
G
A
W
L
D
G
V
L
D
R
Y
S
D
F
I
I
V
F
S
I
T
Y
V
L
S
A
S
N
----------
P
-
V
Y
W
I
I
G
F
L
A
A
F
A
S
-
L
M
I
A
Y
T
G
D
K
F
V
A
A
Y
M
R
T
Y
S
P
E
G
F
A
I
P
I
T
R
D
F
R
L
L
I
I
F
A
C
S
----
V
V
N
L
P
S
L
A
L
V
I
I
A
L
L
G
N
F
E
A
L
R
R
I
V
A
L
RSY-------------------------------
43
Fugue
52.89
14%
-53
* C3 *
4CI2
2
CRBN_CHICK
B:
[71-451]
----
M
I
N
F
D
T
S
L
P
T
-
S
H
M
Y
L
G
S
--
D
M
-
E
E
F
H
G
R
T
L
H
D
D
D
S
C
Q
V
I
P
V
L
PHVM
V
M
L
I
P
G
Q
T
L
P
------------
L
Q
L
F
H
P
Q
E
V
S
M
V
R
N
L
I
Q
K
D
R
T
F
A
V
L
A
Y
S
--
N
--
V
R
E
R
E
A
H
F
G
T
T
A
E
I
Y
A
Y
R
E
E
Q
E
Y
G
I
E
T
V
K
V
K
A
I
-
G
R
Q
R
F
K
V
L
E
I
R
T
Q
S
D
G
I
Q
Q
A
K
V
Q
I
----
L
P
E
R
V
L
---
P
S
T
M
S
A
V
--------
Q
L
Q
S
L
S
R
R
H
I
R
A
F
R
Q
W
W
Q
K
Y
Q
K
R
K
-
F
H
C
A
S
L
T
--
S
W
P
P
W
-
L
Y
S
L
Y
D
A
E
T
L
M
E
R
V
K
R
Q
L
H
E
W
D
E
N
L
K
D
E
S
L
P
T
N
P
I
D
F
S
Y
R
V
A
A
C
L
P
I
D
D
A
L
R
I
Q
-----
L
L
K
I
G
S
A
I
Q
R
L
R
C
E
L
D
I
M
N
K
C
T
--
S
L
C
C
K
Q
C
Q
D
T
E
I
T
T
K
----------
N
E
I
F
S
L
S
L
C
G
P
M
A
A
Y
V
N
P
H
G
Y
I
H
E
T
L
T
V
Y
K
A
C
N
L
N
L
S
G
-
R
P
S
T
E
H
----
S
W
F
P
G
Y
A
----
W
T
I
A
Q
C
-
R
I
C
G
N
H
M
G
W
K
F
T
A
TKKDMSPQKFWGLTRSALLPR--------------------
25
HHSearch
47.67
11%
-116
- C2 -
2JR6
-
Y874_NEIMA
A:
[6-41]
----
L
D
I
L
V
C
P
V
T
K
-
G
R
L
E
Y
H
Q
--
D
K
-
Q
E
L
W
S
R
Q
A
K
L
A
Y
P
I
K
D
G
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
27
HHSearch
43.95
22%
-131
- C2 -
2HF1
1
Y3345_CHRVO
A:
[6-41]
----
L
E
I
L
V
C
P
L
C
K
-
G
P
L
V
F
D
K
--
S
K
-
D
E
L
I
C
K
G
D
R
L
A
F
P
I
K
D
G
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
PsiBlast_PDB
43.92
29%
-144
- C4 -
3V5X
1
FBXL5_HUMAN
A:
[101-159]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
E
Y
E
Q
L
N
-
Y
A
K
Q
L
K
E
--
R
L
E
A
F
-
T
R
D
F
L
P
H
M
K
---
E
E
E
E
V
F
Q
P
M
L
M
---
E
Y
F
T
Y
E
E
L
K
D
I
K
K
K
V
I
A
Q
H
C
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
PsiBlast_PDB
43.08
29%
-149
- C4 -
3V5Z
1
FBXL5_HUMAN
A:
[101-159]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
E
Y
E
Q
L
N
-
Y
A
K
Q
L
K
E
--
R
L
E
A
F
-
T
R
D
F
L
P
H
M
K
---
E
E
E
E
V
F
Q
P
M
L
M
---
E
Y
F
T
Y
E
E
L
K
D
I
K
K
K
V
I
A
Q
H
C
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
26
HHSearch
41.96
17%
-111
- C2 -
2JS4
-
Y2007_BORBR
A:
[6-41]
----
L
D
I
L
V
C
P
V
C
K
-
G
R
L
E
F
Q
R
--
A
Q
-
A
E
L
V
C
N
A
D
R
L
A
F
P
V
R
D
G
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
38
HHSearch
41.34
23%
-102
- C2 -
2K5C
1
?
A:
[8-63]
----------------------------
M
A
K
C
P
I
C
G
S
P
L
K
W
E
E
L
I
-----------
E
E
M
L
I
IEN
F
E
E
I
V
K
D
R
E
R
F
-
L
A
Q
V
E
E
F
V
F
K
C
P
---
V
C
G
E
E
F
Y
G
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
24
HHSearch
40.90
11%
-97
- C2 -
2JNY
-
?
A:
[8-43]
----
L
E
V
L
A
C
P
K
D
K
-
G
P
L
R
Y
L
E
--
S
E
-
Q
L
L
V
N
E
R
L
N
L
A
Y
R
I
D
D
G
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
PsiBlast_PDB
40.84
29%
-148
- C4 -
3V5Y
1
FBXL5_HUMAN
A:
[101-159]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
E
Y
E
Q
L
N
-
Y
A
K
Q
L
K
E
--
R
L
E
A
F
-
T
R
D
F
L
P
H
M
K
---
E
E
E
E
V
F
Q
P
M
L
M
---
E
Y
F
T
Y
E
E
L
K
D
I
K
K
K
V
I
A
Q
H
C
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
44
Fugue
40.80
18%
-140
- C3 -
2MN4
-
?
A:
[1-94]
--------------------------------------------------------------------------------------------------------------------------
M
T
P
E
Q
R
E
F
L
P
E
I
L
A
E
I
I
-
A
N
L
D
P
T
K
I
L
E
E
L
L
R
R
G
L
L
T
P
A
E
L
Q
----
E
V
L
D
L
K
T
P
E
E
Q
A
K
K
L
I
D
F
I
-----
L
K
L
S
P
A
D
V
Q
A
R
I
N
V
L
R
A
H
G
Y
Q
A
L
A
-
D
K
L
N
K
Y
L
--
T
L
E
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
31
HHSearch
39.62
27%
-55
- C2 -
1PFT
1
TF2B_PYRFU
A:
[4-37]
-----
K
Q
K
V
C
P
A
C
E
S
A
E
L
I
Y
D
P
--
E
R
-
G
E
I
V
C
A
K
C
G
Y
V
I
E
E
N
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
28
HHSearch
39.05
17%
-106
- C2 -
2PK7
-
Y1779_PSEF5
A:
[6-41]
----
L
D
I
L
A
C
P
I
C
K
-
G
P
L
K
L
S
A
--
D
K
-
T
E
L
I
S
K
G
A
G
L
A
Y
P
I
R
D
G
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
36
HHSearch
38.63
11%
-148
- C2 -
2JR6
-
Y874_NEIMA
A:
[6-42]
---------------------------------------------------------------------------------
L
D
I
L
V
C
P
---
V
T
K
G
R
L
E
Y
H
Q
--
D
--
K
Q
E
L
W
S
R
Q
A
K
L
A
Y
P
I
K
D
G
I
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
34
HHSearch
38.59
24%
-73
- C2 -
3WWL
1
LYSW_THET8
A:
[2-37]
------
V
G
T
C
P
E
C
G
-
A
E
L
R
L
E
N
P
E
L
G
-
E
L
V
V
C
E
D
C
G
A
E
L
E
V
V
G
L
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
21
HHSearch
38.53
22%
-109
- C2 -
2JNE
2
YFGJ_ECOLI
A:
[31-95]
-----
M
E
L
H
C
P
Q
C
Q
-
H
V
L
D
Q
D
N
-----
G
H
A
R
C
R
S
C
G
E
F
I
E
M
------------------------------------------
K
A
L
C
P
---
D
C
H
Q
P
L
Q
V
L
K
--
A
CG
A
V
D
Y
F
C
Q
H
G
H
G
L
I
S
K
K
R
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
22
HHSearch
38.36
16%
-123
- C2 -
2JRP
2
?
A:
[2-66]
------
E
I
T
C
P
V
C
H
-
H
A
L
E
R
N
----
G
-
D
T
A
H
C
E
T
C
A
K
D
F
S
L
------------------------------------------
Q
A
L
C
P
---
D
C
R
Q
P
L
Q
V
L
K
A
C
G
--
A
V
D
Y
F
C
Q
N
G
H
G
L
I
S
K
K
R
V
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
33
HHSearch
37.90
27%
-60
- C2 -
4QIW
-
RPOP_THEKO
P:
[8-38]
---------
C
A
K
C
G
-
K
E
V
E
L
D
L
--
A
T
A
R
E
V
R
C
P
Y
C
G
S
K
I
L
Y
K
P
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
PsiBlast_PDB
36.06
25%
-38
- C4 -
2XU0
2
?
A:
[345-443]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
Y
C
S
G
D
G
H
D
C
T
Q
T
N
LA
H
N
Q
I
F
-
V
D
L
D
C
P
R
C
Q
---
D
Q
C
I
K
Y
N
E
W
I
V
K
K
L
E
E
F
Y
K
Q
N
L
K
--
Y
S
M
E
I
Q
K
W
K
K
T
K
N
N
Y
Y
D
-----
K
E
F
Y
E
N
L
D
K
K
S
Y
S
T
I
D
K
F
L
N
L
L
N
N
G
--------
K
H
C
H
-------------------------------------------------------------------------------------------------------------------------------------