@TOME V2.3
(Nov 2016)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : bsu06390: (2016-06-10 )
MADVLRRAINQKKQFLKTKLLLSEFYQGRGEQLADYTLSELEKEYKSLQKMKKEI
Atome Classification :
(18 SA)
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------........-.10........20-......-..---.30...---......40........50....-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MADVLRRA-INQKKQFLKTKL--LLSEFY-QG---RG-EQL---ADYTLSELEKEYKSLQKMKKEI-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
15
Fugue
68.54
21%
-141
- C3 -
4D0L
2
PI4KB_HUMAN
A:
[10-566]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------S
W
L
L
R
L
F
E
SKLFD
I
S
M
A
I
S
Y
L
Y
N
SKE
P
G
V
Q
A
Y
I
G
N
R
L
FCFR
N
E
D
V
D
F
Y
L
P
Q
L
L
N
M
Y
I
HMD
E
D
V
G
D
A
I
K
P
Y
I
V
H
R
-
C
R
Q
S
I
N
F
S
L
Q
C
A
--
L
L
L
G
A
Y
-
S
S
---
R
G
-
T
K
L
---
R
K
L
I
L
S
R
L
A
P
E
R
E
F
I
K
S
L
M
A
I
G
K
R
L
ATLPT
K
E
Q
K
T
Q
R
L
I
S
E
L
S
L
L
N
H
K
LPARVWLPTAG
F
D
H
H
V
V
RVPHTQAVVLNSKDK
A
P
Y
L
I
Y
V
E
V
L
E
C
ENFDTTSV
P
A
R
I
PENPSAVALKEP
W
Q
E
K
V
R
R
I
R
E
G
SPYGHLPN
W
R
L
L
S
V
I
V
K
CGDDL
R
Q
E
L
L
A
F
Q
V
L
K
Q
L
Q
S
I
W
E
Q
E
RVP
L
W
I
K
P
Y
K
I
L
V
ISAD
S
G
M
I
E
P
V
V
NAVS
I
H
Q
V
K
K
Q
S
QLS
L
L
D
Y
F
L
Q
E
HGSYTT
E
A
F
L
S
A
Q
R
N
F
V
Q
S
C
A
G
Y
C
L
V
C
Y
L
L
QVKDRHNGN
I
L
L
D
AEG
H
I
I
H
I
DFGFILSSSSAFKLT
T
E
F
V
D
V
M
GGLDG
D
M
F
N
Y
Y
K
M
L
M
L
Q
G
L
I
A
A
R
K
H
M
D
K
V
V
Q
I
V
E
I
M
Q
QGSQLPCFHGSS
T
I
R
N
L
K
E
R
F
HMSMT
E
E
Q
L
Q
L
L
V
E
Q
M
V
D
G
S
M
RS
13
Fugue
61.77
10%
-188
- C3 -
4FFB
-
STU2_YEAST
C:
[11-272]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TLP
L
E
E
R
L
TYKL
W
K
A
R
L
E
A
Y
K
E
L
N
Q
L
F
R
N
SQIYWRDP
T
L
F
A
Q
Y
I
T
DSN
V
V
A
Q
E
Q
A
I
V
A
L
N
S
L
I
D
A
FALK
N
A
H
N
I
T
L
I
S
T
W
T
P
L
L
V
E
KGLTSSR
A
T
T
K
T
Q
S
M
S
C
I
L
S
L
C
G
L
D
TSI
T
Q
S
V
E
L
V
IPFFEKKL
P
K
L
I
A
A
A
A
N
C
V
Y
E
L
M
A
A
FGLTNVNVQTF
L
P
E
L
L
K
H
V
P
Q
L
-
A
G
H
G
D
R
N
V
R
S
Q
T
M
N
L
I
V
E
I
Y
-
K
V
---
L
F
-
K
K
L
---
K
P
I
Q
V
K
D
L
H
K
L
F
A
K
V
G
D
L
F
E
W
E
K
R
E
L
E
K
K
R
S
Q
EEEA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
16
Fugue
55.90
14%
-40
- C3 -
4FZ4
3
?
A:
[1-154]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------E
A
M
A
K
V
E
E
V
Q
K
V
V
K
E
L
E
K
E
L
G
E
L
D
K
VPSYGDAQDY
S
Y
Q
K
A
L
W
E
E
F
L
R
I
G
K
D
N
M
D
Y
A
S
K
MKADDKF
F
H
K
V
K
G
D
L
N
D
F
K
Y
Q
I
K
V
E
N
Y
I
R
Q
V
A
E
L
R
K
K
Y
PGD
N
T
I
E
E
E
Y
N
A
H
-
L
K
Q
D
E
G
----------
K
S
I
A
-
S
Q
---
E
G
-
A
T
L
---
R
D
Y
V
D
R
E
A
S
E
A
M
G
R
I
K
Q
R
V
A
E
L
E
I
L
E
H
H-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
12
Fugue
46.88
12%
-40
- C2 -
1JQE
2
HNMT_HUMAN
A:
[13-292]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G
K
Y
V
E
S
F
R
R
F
L
N
H
S
T
E
H
Q
C
M
Q
E
F
M
D
K
K
L
P
G
I
I
G
RIGDTKS
E
I
K
I
L
S
I
GGGAG
E
I
D
L
Q
I
L
S
K
V
Q
A
Q
Y
PG
V
C
I
N
N
E
V
VEPS
A
E
Q
I
A
K
Y
K
E
L
V
A
K
ISNLEN
V
K
F
A
W
H
KET
S
S
E
Y
Q
S
R
M
L
EKK
E
L
Q
K
W
D
F
I
H
M
I
QMLYYVKD
I
P
A
T
L
K
F
F
H
S
L
LGTN
A
K
M
L
I
I
V
V
SGSS
G
W
D
K
L
W
K
K
YGSRFPQDDLCQYIT
S
D
D
L
T
Q
M
L
D
N
L
G
L
K
Y
E
C
Y
D
L
L
S
T
M
--
D
I
S
D
C
F
-
I
D
GN
E
N
G
-
D
L
L
---
W
D
F
L
T
E
T
C
N
F
N
A
T
A
P
P
D
L
R
A
E
L
G
K
D
L
Q
EPEF
S
A
K
K
EG
K
V
L
F
NN
T
L
S
F
I
V
I
E
A-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
19
Fugue
46.45
9%
-133
- C3 -
2QK1
-
STU2_YEAST
A:
[313-559]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SHMASML
P
E
E
T
I
LDKLPKD
F
Q
E
R
I
T
SSK
W
K
D
R
V
E
A
L
E
E
F
W
D
S
VLSQTKKLKSTSQNY
S
N
L
L
G
I
Y
G
H
I
I
Q
KDAN
I
Q
A
V
A
L
A
A
Q
S
V
E
L
I
C
D
K
L
KTPGFS
K
D
Y
V
S
L
V
F
T
P
L
L
D
R
TKEKK
P
S
V
I
E
A
I
R
K
A
L
L
T
I
C
K
Y
Y
DPLASSGRN
E
D
M
L
K
D
I
L
E
H
M
K
HKT
P
Q
I
R
M
E
C
T
Q
L
F
N
A
S
M
K
E
EKDGY
S
T
L
Q
R
Y
LKDE
V
V
P
I
V
I
Q
I
-
V
N
D
T
Q
P
A
I
R
T
I
G
F
E
S
F
A
I
L
I
-
K
I
---
F
G
M
N
T
F
---
V
K
T
L
E
H
L
D
N
L
K
R
K
K
I
E
E
T
V
K
T
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
HHSearch
44.21
33%
-59
- C3 -
5A49
-
OSKA_DROME
A:
[171-185]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
I
T
I
S
S
I
K
S
E
Y
R
K
L
T
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
HHSearch
42.98
12%
-180
- C1 -
2Y9T
-
P63_HUMAN
A:
[560-585]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
C
L
D
Y
F
--
T
T
Q
G
L
T
-
T
I
------
Y
Q
I
---
E
H
Y
S
M
D
D
L
A
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
HHSearch
41.45
40%
-62
- C3 -
3RCO
1
TDRD7_HUMAN
A:
[27-41]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
G
V
A
L
P
R
L
Q
G
E
Y
R
S
L
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
20
Fugue
41.34
14%
116
- C3 -
1Z56
2
LIF1_YEAST
A:
[159-235]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ADKLYKDIC
C
V
N
D
S
Y
R
N
I
K
E
S
D
S
S
N
-
R
N
R
V
E
Q
L
A
R
E
R
E
--
L
L
D
K
L
L
-
E
T
---
R
D
-
E
R
T
---
R
A
M
M
V
T
L
L
N
E
K
K
K
K
I
R
E
L
H
E
I
L
RQNNI--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
14
Fugue
40.81
22%
140
* C3 *
4ZH0
-
?
A:
[27-527]
-Q
D
L
S
D
R
Y
E
S
L
N
N
L
L
N
R
Y
S
T
L
N
T
L
I
K
L
S
A
D
P
S
A
I
N
A
V
R
E
N
L
G
A
S
A
K
N
L
I
G
DKANS
P
A
Y
Q
A
V
L
L
A
I
N
A
A
V
G
F
W
N
V
VGYV
T
Q
C
G
G
N
A
NGQKSI
S
S
K
T
I
F
N
NEPGYRST
S
I
T
C
S
L
N
GHSPGYYGPMS
I
E
N
F
K
K
L
N
E
A
Y
Q
I
L
Q
T
A
L
K
R
GLPALKEN
N
G
K
V
N
V
T
Y
T
Y
T
C
S
G
D
GNNNCSSQVTGVNNQK
D
G
T
K
T
K
I
Q
T
I
DG
K
S
V
T
T
T
I
S
S
K
V
V
D
SRADGNTTG
V
S
Y
T
E
I
T
N
K
L
E
GVPDS
A
Q
A
L
L
A
Q
A
S
T
L
I
N
T
I
N
N
A
C
P
Y
F
H
APKFSTTTGK
I
C
G
A
F
S
E
E
I
S
A
I
Q
K
M
I
T
D
A
Q
E
L
V
N
Q
T
S
V
I
N
E
H
EQT
T
P
V
G
N
NNGKPFNPFTDASF
A
Q
G
M
L
A
N
A
S
A
Q
A
K
M
L
N
L
A
E
Q
V
G
Q
A
I
NPERLSG
T
F
Q
N
F
V
K
G
FLATCNNPSQGSAPGTVTTQTFASGCAY
V
G
Q
T
I
T
N
L
-
K
N
S
I
A
H
F
-------
G
T
Q
E
Q
Q
-
I
Q
---
Q
A
-
E
N
I
---
A
D
-
T
L
V
N
F
K
S
R
Y
S
E
L
G
N
T
Y
N
S
I
T
T
A
L
S
N
IPNAQSLQNA
V
S
K
K
N
N
PYSPQGID
T
N
Y
Y
L
N
Q
N
S
Y
N
Q
I
Q
T
I
N
Q
E
L-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
Fugue
38.61
14%
-33
- C3 -
2I9F
3
NCAP_EAVBU
A:
[6-64]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------HHH
E
P
G
D
L
R
H
D
-
L
N
-
Q
Q
E
R
A
T
L
S
S
--
N
V
Q
R
F
F
M
I
G
---
H
G
-
S
L
T
---
A
D
A
G
G
L
T
Y
T
V
S
W
V
P
T
K
Q
I
Q
R
K
V
A------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
HHSearch
37.42
31%
53
- C3 -
5A48
-
OSKA_DROME
A:
[170-185]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
G
I
T
I
S
S
I
K
S
E
Y
R
K
L
T
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
HHSearch
34.81
17%
12
- C3 -
3LXU
-
TPP2_DROME
X:
[1229-1277]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
K
T
N
-
M
D
K
Q
K
N
T
L
I
E
A
L
--
S
K
K
G
I
A
-
V
A
---
K
L
-
A
V
L
DDC
I
K
D
S
L
A
E
I
N
E
L
Y
T
E
I
I
K
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
HHSearch
34.62
38%
89
- C3 -
2MQD
-
?
A:
[106-126]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
A
L
T
L
S
Q
L
K
K
E
F
Y
Q
T
R
S
Q
K
R
E
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
HHSearch
32.53
23%
70
- C3 -
2YXY
-
?
A:
[5-28]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
Q
-
K
R
Y
---
S
E
M
T
K
E
E
L
Q
Q
E
I
A
M
L
T
E
K
A
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
17
Fugue
30.93
15%
-12
- C3 -
3A5C
1
VATA_THET8
A:
[1-577]
MIQ
G
V
I
Q
KIAGPA
V
I
A
K
G
M
LGARMYD
I
C
K
V
G
EEG
L
V
G
E
IIRLDGD
T
A
F
V
Q
V
YEDTSGLKVG
E
P
V
V
S
TGLP
L
A
V
E
L
G
P
GMLN
G
I
Y
D
GIQRPLVHALDRE
K
K
W
A
W
T
P
MVKPG
D
E
V
R
GGMVLGTVPEFGF
T
H
K
I
L
VPPDVRGRVK
E
V
K
P
A
G
E
Y
T
VEEPVVVLEDGTELKM
Y
H
T
W
P
VRRARPVQRKLDPNTPFLTGM
R
I
L
D
V
L
F
P
V
A
MG
G
T
A
A
I
P
G
P
F
GSG
K
T
V
T
Q
Q
S
L
A
K
WSNAD
V
V
V
Y
VGCGERGN
E
M
T
D
V
L
VEFPELTDPKTGGPLMHR
T
V
L
I
A
N
T
SNMP
V
A
A
R
E
A
S
I
Y
V
G
V
T
I
A
E
Y
F
R
D
Q
G
F
S
V
A
L
M
A
DS
T
S
R
W
A
E
A
L
R
E
I
S
S
R
L
EEMPAEEGYPPY
L
A
A
R
L
A
A
F
Y
E
R
A
G
K
V
ITLG
G
E
E
G
A
V
T
I
V
G
A
V
S
P
PGGDMSEPV
T
Q
S
T
L
R
I
VG
A
F
W
R
L
D
A
S
-
L
A
F
R
R
H
F
P
A
I
N
W
--
N
G
S
--
Y
-
S
L
---
F
T
-
S
A
L
---
D
P
W
Y
R
E
N
V
A
E
D
Y
P
E
L
R
D
A
I
S
E
L
L
Q
R
E
A
G
L
Q
E
I
V
Q
L
VGPDALQ
D
A
E
R
L
V
I
E
V
G
R
I
I
R
E
DFLQQNAYHEVDAYCS
M
K
K
A
Y
G
I
M
K
M
I
L
A
F
Y
K
E
A
E
A
A
I
K
R
GVS
I
D
E
I
L
Q
L
P
V
L
E
R
I
G
R
ARYVSEEE
F
P
A
Y
F
E
E
A
M
K
E
I
Q
G
A
F
K
A
L-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
HHSearch
28.92
40%
83
- C3 -
3S93
-
TDRD5_HUMAN
A:
[25-39]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
G
L
S
P
Q
E
L
E
K
E
Y
L
L
M
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10
HHSearch
7.40
12%
0
- C- -
1DXS
10
A:
[21-45]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
C
I
E
Y
F
--
T
S
Q
G
L
Q
-
S
I
------
Y
H
L
---
Q
N
L
T
I
E
D
L
G
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------