@TOME V2.3
(Nov 2016)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : bsu07530: (2016-06-12 )
MQYFSPEQQYNAWIVSDLVKQIFHKRAGCSPGIHELAVFAEEHFHIDIDFVFSIIMNIGDIEFALTDEIEKKLSGYLSTLLPYVTADMFETSKANAHAFLSRRHGNAAYHLFVSDDAFMRKQ
Atome Classification :
(20 SA)
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------...-......10..--...------...20-.---.......-----------30.......-.40......--..-50..------..-....60.....---..------------------------------------.70...-.....80.......-.90..-----......-100....--...110-......---.-120----------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MQY-F
S
P
E
Q
Q
Y
N
A
W
--
I
V
S
------
D
L
V
K
Q
-
I
---
F
H
K
RAGC-----------SP
G
I
H
E
L
A
V
-
F
A
E
E
H
F
H
I
D
--
I
D
-
F
V
F
S
------
I
I
-MNIGD
I
E
F
A
L
T
---
D
E
------------------------------------
I
E
K
K
L
S
-
G
Y
L
S
T
L
L
P
Y
V
T
A
D
M
-
F
ETSK-----A
N
A
H
A
F
-
L
SRRHGN--
A
A
Y
H
L
F
-VS
D
D
A
F
---M-RKQ----------------------------------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
85.54
97%
-192
- C5 -
2EUC
-
YFMB_BACSU
A:
[2-113]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
Y
-
F
S
P
E
Q
Q
Y
N
A
W
--
I
V
S
------
D
L
V
K
Q
-
I
---
F
H
K
R
A
G
C
-----------
S
P
G
I
H
E
L
A
V
-
F
A
E
E
H
F
H
I
D
--
I
D
-
F
V
F
S
------
I
I
-
M
N
I
G
D
I
E
F
A
L
T
---
D
E
------------------------------------
I
E
K
K
L
S
-
G
Y
L
S
T
L
L
P
Y
V
T
A
D
M
-
F
E
T
S
K
-----
A
N
A
H
A
F
-
L
S
-------
A
A
Y
H
L
F
-
V
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
HHSearch
63.84
100%
-24
- C5 -
2EUC
-
YFMB_BACSU
A:
[1-113]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
Q
Y
-
F
S
P
E
Q
Q
Y
N
A
W
--
I
V
S
------
D
L
V
K
Q
-
I
---
F
H
K
R
A
G
C
-----------
S
P
G
I
H
E
L
A
V
-
F
A
E
E
H
F
H
I
D
--
I
D
-
F
V
F
S
------
I
I
-
M
N
I
G
D
I
E
F
A
L
T
---
D
E
------------------------------------
I
E
K
K
L
S
-
G
Y
L
S
T
L
L
P
Y
V
T
A
D
M
-
F
E
T
S
K
-----
A
N
A
H
A
F
-
L
S
-------
A
A
Y
H
L
F
-
V
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------
22
Fugue
49.23
19%
-113
- C4 -
4WZ9
4
?
A:
[40-926]
QAVDERYRLPTT
S
I
P
I
H
YD
L
H
L
R
T
EIHRNER
T
F
T
G
T
V
G
I
Q
L
Q
V
VQATD
K
L
V
M
H
N
R
GLVMS
S
A
K
V
S
S
LPNGVT
G
A
P
T
L
IG
D
V
Q
Y
S
T
D
TTFE
H
I
T
F
T
S
P
T
I
L
Q
P
G
T
Y
L
L
E
V
A
F
Q
G
R
L
A
TNDDGF
Y
V
S
S
Y
V
A
DNG
E
R
R
Y
L
A
T
T
Q
F
ESTSARMAFPCYDEPGL
K
A
T
F
T
V
S
I
T
H
S
LS
Y
K
A
I
S
NMPQK
T
T
T
D
I
ET
D
M
R
T
T
F
F
E
K
T
P
A
M
S
TYL
L
A
F
V
V
SD
F
Q
L
R
L
S
GA
Q
R
V
Y
V
RPNAFNEA
T
F
A
L
E
A
G
V
K
I
L
K
V
L
D
D
H
L
GIPYDTYMP
K
L
D
Q
I
A
I
PDFAAGAMENWG
L
V
T
Y
REQALLFNPAVST
Y
R
G
K
T
N
V
A
T
T
I
A
H
E
Y
A
H
QWFGNLVSPEWWEY
I
W
L
N
E
G
F
A
T
L
Y
E
F
Y
A
L
D
M
A
Y
PGQEYWELFNQQV
I
Q
Y
A
M
G
Q
D
G
QASTRPM
N
W
N
A
A
T
P
G
E
I
S
A
L
FDRVAY
D
K
S
G
S
V
L
N
M
M
R
H
V
L
G
D
D
N
W
K
A
G
L
K
A
Y
L
T
D
R
AL
Q
G
A
V
D
E
Q
L
Y
A
G
L
Q
S
A
I
EGKGVLPNGVT
V
A
Q
I
M
R
T
W
T
N
E
A
G
Y
P
V
L
N
V
R
R
SYDT
G
D
V
I
I
S
Q
E
RFYND
R
K
V
P
N
TNIWM
I
P
Y
N
Y
V
H
QAKADFNEFDD
F
Q
W
L
ATK
A
A
R
I
E
T
TVPAN
E
W
I
V
F
NKQQVGY
Y
R
V
N
Y
D
E
H
N
W
E
L
I
T
N
A
L
H
E
NWASIH
R
L
N
R
A
Q
L
I
D
D
A
Y
W
L
A
R
S
GRLD
L
R
V
A
L
R
F
M
T
Y
-
L
R
N
E
R
E
Y
A
P
W
--
T
A
A
------
N
V
A
L
T
-
Y
---
F
N
N
R
L
R
G
-----------
T
A
E
Y
H
N
F
L
I
-
F
V
D
A
L
I
E
-
D
--
I
Y
-
S
L
L
T
------
I
----------
D
A
V
---
S
P
------------------------------------
D
D
T
L
L
H
-
K
Y
L
V
Q
T
I
S
T
W
A
C
S
M
G
Y
T
D
C
L
-----
M
K
T
A
A
L
-
L
K
A
E
A
S
G
TG
P
A
V
H
P
D
-
I
A
S
V
T
Y
C
Y
G
M
-
R
S
A
L
E
S
E
F
Q
Y
L
Y
R
K
M
M
N
SKN
L
A
E
R
T
M
L
I
D
S
L
G
C
SNN
K
E
F
L
K
A
F
L
T
T
A
L
GSINYR
A
D
E
R
R
R
V
V
Q
A
I
Y
S
GG
R
T
G
V
D
A
L
I
E
F
L
M
D
P
A
L
V
N
E
F
V
S
T
L
S
T
S
T
L
N
S
A
L
S
A
I
A
S
R
TNN
V
E
E
M
N
K
L
N
A
L
I
T
A
L
GSRVN
S
Q
T
A
A
N
L
R
T
T
A
Q
A
N
L
D
W
V
N
G
F
E
G
L
M
L
S
N
F
L
AEA
27
Fugue
48.15
14%
-146
- C4 -
1Q9C
-
SOS1_HUMAN
A:
[6-177]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
P
Y
E
F
F
S
E
E
N
A
P
K
W
RG
L
L
V
------
P
A
L
K
K
-
V
---
Q
G
Q
V
H
P
T
-----------
L
E
S
N
D
D
A
L
Q
-
Y
V
E
E
L
I
L
Q
L
--
L
N
M
L
C
Q
A
------
Q
P
-
R
S
A
S
D
V
E
E
R
V
Q
---
K
S
FPH
P
I
D
K
W
A
I
A
D
A
Q
S
A
I
ESLP
V
E
K
I
H
P
L
L
K
E
V
L
G
Y
K
I
D
H
Q
V
S
-
V
Y
I
V
A
V
L
E
Y
I
S
A
D
I
-
L
K
L
A
G
-----
N
Y
V
R
N
I
-
R
H
Y
E
I
T
K
--
Q
D
I
K
V
A
M
C
A
D
K
V
L
M
--
D
M
F
H
-----------------------------------------------------------------------------------------------------------------------------------------------------------------
25
Fugue
40.54
25%
-126
* C6 *
4QGL
3
MTND_BACAN
A:
[1-174]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAAA
M
A
Q
I
R
I
H
EVN
T
R
I
E
N
E
V
K
V
S
K
F
L
Q
E
E
G
V
L
Y
E
K
W
NISKLPPHL
N
E
N
-
Y
S
L
T
D
E
N
K
A
E
--
I
L
A
------
V
F
S
K
E
-
I
A
D
-
V
S
A
R
R
G
Y
K
A
H
D
V
I
S
L
S
NS
T
P
N
L
D
E
L
L
I
N
F
Q
K
E
H
H
H
T
D
D
E
V
R
-
F
I
V
S
------------
G
H
G
I
F
A
I
E
---
G
K
------------------------------------
D
G
T
F
F
D
-
V
E
L
E
P
------
G
D
L
-
I
S
V
P
E
-----
N
A
R
H
Y
F
T
L
Q
D
D
R
Q
V
--
V
A
I
R
I
F
-
V
T
T
E
G
W
---
V
-
P
I
Y
----------------------------------------------------------------------------------------------------------------------------------------------------------------
17
HHSearch
39.86
20%
-141
- C5 -
1XL7
-
OCTC_MOUSE
A:
[26-71]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
P
A
------------------------------------
L
E
E
S
L
K
-
K
Y
L
E
S
V
K
P
F
A
N
E
D
E
-
Y
K
K
T
E
-----
E
I
V
Q
K
F
-
Q
E
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
24
Fugue
36.73
17%
-43
- C4 -
2KCK
-
?
A:
[1-112]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
V
D
-
Q
N
P
E
E
Y
Y
L
E
G
--
V
L
Q
Y
D
AGN
Y
T
E
S
I
D
-
L
---
F
E
K
A
I
Q
L
-----------
D
P
E
E
S
K
Y
W
L
-
M
K
G
K
A
L
Y
N
L
--
E
R
-
Y
E
E
A
------
V
D
-
C
Y
N
Y
V
I
N
-
V
I
E
---
D
E
------------------------------------
Y
N
K
D
V
W
-
A
A
K
A
D
A
L
R
Y
I
E
G
K
E
-
V
E
A
E
I
-----
A
E
A
R
A
K
-
L
E
H
H
H
H
H
--
H
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
28
Fugue
35.07
14%
-119
- C2 -
3JYZ
1
?
A:
[1-150]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GI
D
P
F
-
T
V
R
T
R
V
S
E
G
L
--
V
L
A
------
E
P
A
K
L
M
I
S
T
D
G
S
A
S
T
A
D
-----------
L
T
R
A
T
T
T
W
N
-
Q
Q
S
N
N
L
G
A
S
--
S
K
-
Y
V
T
S
------
V
L
M
D
A
G
N
T
G
V
I
T
I
T
Y
VA
D
Q
------------------------------------
V
G
L
P
T
A
-
G
N
T
L
I
L
S
P
Y
I
N
D
G
---
N
T
R
T
-----
A
L
A
T
A
V
-
A
A
G
T
R
G
T
--
I
D
W
A
C
T
-
S
A
S
N
A
T
---
A
-
T
A
Q
GFTG
M
A
A
G
S
VPQEFAPAQCR--------------------------------------------------------------------------------------------------------------------------------------------
19
HHSearch
32.56
11%
-273
- C5 -
3P04
-
?
A:
[92-119]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
------
V
V
-
F
D
M
S
L
L
S
R
E
E
A
---
R
R
------------------------------------
I
V
D
F
A
A
-
G
L
C
F
A
L
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
PsiBlast_PDB
27.65
37%
-96
- C3 -
3J0E
-
EFG_ECOLI
H:
[153-204]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
V
N
Q
-
I
----
K
T
R
L
G
A
-----------
N
P
V
P
L
Q
L
A
I
-
G
A
E
E
H
F
T
G
V
--
V
D
-
L
V
K
M
------
K
A
-
I
N
W
N
D
A
D
Q
G
V
T
---
F
E
------------------------------------
Y
E
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
PsiBlast_PDB
27.39
30%
-109
- C5 -
3O0R
3
NORB_PSEAE
B:
[20-62]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
F
V
F
A
------
L
I
-
L
F
V
G
Q
I
L
F
G
L
I
---
M
G
------------------------------------
L
Q
Y
V
V
G
-
D
F
L
F
P
A
I
P
F
N
V
A
R
M
-
V
H
T
N
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
20
HHSearch
26.43
26%
-16
- C5 -
2OU1
-
APOA2_HUMAN
A:
[4-47]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
---
P
C
------------------------------------
V
E
S
L
V
S
-
Q
Y
F
Q
T
V
T
D
Y
-
G
K
D
L
-
M
E
K
V
K
S
PELQ
A
E
A
K
S
Y
-
F
E
K
S
K
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
PsiBlast_PDB
26.39
30%
-116
- C5 -
3WFC
3
NORB_PSEAE
B:
[20-62]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
F
V
F
A
------
L
I
-
L
F
V
G
Q
I
L
F
G
L
I
---
M
G
------------------------------------
L
Q
Y
V
V
G
-
D
F
L
F
P
A
I
P
F
N
V
A
R
M
-
V
H
T
N
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
16
HHSearch
26.22
21%
-168
- C5 -
3DRX
-
KCTD5_HUMAN
A:
[46-90]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
R
-
L
N
V
G
G
T
Y
F
L
T
T
---
R
Q
------------------------------------
T
L
C
R
D
P
K
S
F
L
Y
R
L
C
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
PsiBlast_PDB
26.21
30%
-111
- C5 -
3WFD
3
NORB_PSEAE
B:
[20-62]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
F
V
F
A
------
L
I
-
L
F
V
G
Q
I
L
F
G
L
I
---
M
G
------------------------------------
L
Q
Y
V
V
G
-
D
F
L
F
P
A
I
P
F
N
V
A
R
M
-
V
H
T
N
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
PsiBlast_PDB
25.97
30%
-112
- C5 -
3WFE
3
NORB_PSEAE
B:
[20-62]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
F
V
F
A
------
L
I
-
L
F
V
G
Q
I
L
F
G
L
I
---
M
G
------------------------------------
L
Q
Y
V
V
G
-
D
F
L
F
P
A
I
P
F
N
V
A
R
M
-
V
H
T
N
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
PsiBlast_PDB
25.95
30%
-98
- C5 -
3WFB
3
NORB_PSEAE
B:
[20-62]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
F
V
F
A
------
L
I
-
L
F
V
G
Q
I
L
F
G
L
I
---
M
G
------------------------------------
L
Q
Y
V
V
G
-
D
F
L
F
P
A
I
P
F
N
V
A
R
M
-
V
H
T
N
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
13
HHSearch
24.66
13%
-144
- C5 -
1QHL
-
MUKB_ECOLI
A:
[148-225]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
P
L
N
E
L
K
D
-
K
L
E
A
M
E
G
V
Q
--
F
K
-
Q
F
N
S
I
T
D
Y
H
S
L
M
-
F
D
L
G
I
I
A
R
R
L
R
---
S
A
-------------------------------------
S
D
-
R
S
-
K
F
Y
R
L
I
E
A
S
L
Y
G
G
I
-
S
S
A
I
T
-----
R
S
L
R
D
Y
-
L
L
P
E
N
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
24.58
45%
-56
- C5 -
2IL5
-
?
A:
[24-56]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
F
S
P
E
L
V
Y
E
A
W
--
T
K
K
------
D
L
L
K
Q
-
W
---
F
M
T
S
A
R
T
-----------
N
K
E
I
E
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
18
HHSearch
23.76
11%
-150
- C5 -
4PLG
2
?
A:
[246-289]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
A
--
S
A
I
------
E
M
A
E
A
-
Y
---
L
K
D
---------------
K
K
R
V
L
V
C
S
C
-
Y
L
E
G
Q
Y
G
H
K
---
D
-
M
F
V
G
------
V
P
-
A
V
I
G
G
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------