@TOME V2.3
(Nov 2016)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : bsu07970: (2016-06-12 )
MGNAVNNKDQQIDYLKNRLDMFMNVIDSLDPEATDVEDIDRLISMLDDLEAKYERFKKDWE
Atome Classification :
(20 SA)
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------.........10........20.....---...30.--.--------------------.-.....------40....---------....50..-......60----------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MGNAVNN
K
D
Q
Q
I
D
Y
L
K
N
R
L
D
M
F
M
N
V
I
---
D
SLDPE--A--------------------T-
D
V
E
D
I
------
D
R
L
I
S
M
---------
L
D
D
L
E
A
K
Y
-
E
R
F
KKDWE----------------------------------------------------
4
PsiBlast_PDB
80.01
28%
-60
- C3 -
3CAZ
-
?
A:
[119-168]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
E
T
D
K
Y
R
E
R
Y
D
H
Y
K
V
K
L
---
D
N
L
E
K
K
--
N
--------------------
K
-
D
Q
E
R
I
------
E
R
N
Q
Q
K
---------
F
K
D
A
E
A
A
Y
-
S
S
V
C
A
D
------------------------------------------------------
26
Fugue
69.62
22%
-119
- C3 -
3FDQ
2
MOGR_LISMO
A:
[4-143]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SE
I
R
K
L
L
Q
E
I
K
K
Q
V
D
N
PGNS
S
T
T
E
I
K
K
M
A
S
E
A
GID
E
Q
T
A
E
E
I
Y
H
L
L
T
E
F
Y
Q
A
V
E
E
H
G
G
I
E
K
Y
M
H
S
N
I
S
W
L
K
I
E
L
E
L
L
S
A
C
Y
---
Q
I
A
I
L
E
--
D
--------------------
M
-
K
V
L
D
I
------
S
E
M
L
S
L
NDLRIFPKT
P
S
Q
L
Q
N
T
Y
-
Y
K
L
K
K
E
L
I
QVEDIPK
N
K
P
G
R
KRK-------------------------------------
29
Fugue
67.26
13%
-84
- C3 -
2LW1
-
UUP_ECOLI
A:
[551-635]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------KAETVKRSSSKLS
Y
K
L
Q
R
E
L
E
Q
L
P
Q
L
L
E
D
L
E
A
K
L
E
A
L
Q
T
Q
V
---
A
D
A
S
F
F
--
S
--------------------
Q
-
P
H
E
Q
T
------
Q
K
V
L
A
D
---------
M
A
A
A
E
Q
E
L
-
E
Q
A
F
E
R
W
E
Y
L
E
A
L
K
N
G
G-------------------------------------------
1
PsiBlast_PDB
60.10
28%
-137
- C3 -
3U0C
-
IPAB_SHIFL
A:
[142-180]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
K
L
K
N
A
D
S
K
I
K
D
L
E
N
K
I
N
Q
I
Q
T
R
L
---
S
E
L
D
P
E
--
S
--------------------
P
-
E
K
K
K
L
------
S
R
----------------------------------------------------------------------------------
14
HHSearch
60.06
13%
-224
- C3 -
1NAF
-
GGA1_HUMAN
A:
[216-261]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
A
I
E
E
V
N
N
N
V
K
L
L
T
E
M
V
---
M
S
H
S
Q
G
---------------------------
S
S
E
----------
D
L
---------
M
K
E
L
Y
Q
R
C
-
E
R
M
R
P
-------------------------------------------------------
34
Fugue
58.83
24%
-31
- C3 -
2LN3
-
?
A:
[1-83]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
G
L
T
R
T
I
T
S
Q
N
K
E
E
L
L
E
I
A
L
K
F
I
S
Q
G
---
L
D
L
E
V
E
F
D
S
--------------------
T
-
D
D
K
E
I
------
E
E
F
E
R
D
---------
M
E
D
L
A
K
K
T
G
V
Q
I
Q
K
Q
W
Q
GN
K
L
R
I
R
L
K
GSLEHHHHHH---------------------------------
7
HHSearch
57.86
11%
-171
- C3 -
1WRD
-
TOM1_HUMAN
A:
[222-266]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
E
L
E
M
V
S
G
N
V
R
V
M
S
E
M
L
---
T
E
L
V
P
T
--
Q
--------------------
A
-
E
P
A
---------
D
L
-
E
L
---------
L
Q
E
L
N
R
T
C
-
R
A
M
Q
Q
-------------------------------------------------------
8
HHSearch
57.06
13%
-217
- C3 -
1OXZ
-
GGA1_HUMAN
A:
[216-261]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
A
I
E
E
V
N
N
N
V
K
L
L
T
E
M
V
---
M
S
H
S
Q
G
--
G
--------------------
A
A
A
G
S
S
E
----------
D
L
---------
M
K
E
L
Y
Q
R
C
-
E
R
M
R
P
-------------------------------------------------------
32
Fugue
53.19
15%
-53
- C3 -
4KVS
3
ALDEC_PROMM
A:
[22-242]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ALPDFTS
D
R
Y
K
D
A
Y
S
R
I
N
A
I
V
I
E
G
E
Q
E
A
H
D
N
Y
I
A
I
G
T
L
L
P
DH
V
E
E
L
K
R
L
A
K
M
E
M
R
H
K
K
G
F
T
A
C
G
K
N
L
GVEAD
M
D
F
A
R
E
F
F
A
P
L
R
D
N
F
Q
T
A
L
G
Q
GK
T
P
T
C
L
L
I
QAL
L
I
E
A
F
A
I
S
F
Y
H
T
Y
I
P
V
SD
P
F
A
R
K
I
T
E
G
V
V
K
D
E
Y
T
H
L
N
Y
G
E
A
W
L
K
A
N
L
E
S
C
---
R
E
-
E
L
L
--
E
--------------------
A
-
N
R
E
N
L
------
P
L
I
R
R
M
---------
L
D
Q
V
A
G
D
A
-
A
V
L
Q
M
D
K
E
D
L
I
E
D
F
L
I
A
Y
Q
E
S
L
T
E
I
GFN
T
R
E
I
T
R
M
A
A
AAL--------------------
19
HHSearch
51.60
13%
-127
- C3 -
1O3X
-
GGA1_HUMAN
A:
[216-261]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
A
I
E
E
V
N
N
N
V
K
L
L
T
E
M
V
---
M
S
H
S
Q
G
--
G
--------------------
A
A
A
G
S
S
---------
E
-
D
L
---------
M
K
E
L
Y
Q
R
C
-
E
R
M
R
P
-------------------------------------------------------
2
PsiBlast_PDB
50.11
38%
-97
- C3 -
4DDD
3
?
A:
[194-242]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
K
I
D
V
M
V
D
V
I
GHP
N
A
S
I
Q
E
--
A
--------------------
S
-
A
T
C
D
I
K
F
I
P
L
D
D
R
L
I
------------
D
D
L
H
A
K
Y
-
P
Y
Y
Q
K
D
------------------------------------------------------
9
HHSearch
46.87
11%
-76
- C3 -
1WR6
-
GGA3_HUMAN
A:
[215-259]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
H
T
L
E
E
V
N
N
N
V
R
L
L
S
E
M
L
---
L
H
Y
S
Q
E
--
D
--------------------
S
-
S
D
G
D
R
----------
E
L
---------
M
K
E
L
F
D
Q
C
-
E
N
K
R
--------------------------------------------------------
17
HHSearch
45.62
13%
-31
- C3 -
2JQE
-
SRP54_ARCFU
A:
[354-418]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
E
M
T
Q
E
K
M
K
K
F
R
V
I
M
---
D
S
M
T
E
E
--
E
L
L
N
PKIID
S
S
R
I
R
R
I
A
I
G
S
G
T
-
S
P
Q
E
V
------
K
E
L
L
N
Y
---------
Y
K
T
M
K
N
L
M
-
K
K
M
---------------------------------------------------------
12
HHSearch
45.28
7%
-204
- C3 -
4NB5
-
MMPR5_MYCTU
A:
[117-158]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
A
D
V
G
L
---
R
A
L
G
D
A
P-
P
--------------------
Q
-
R
S
R
R
L
------
R
E
M
R
D
L
---------
L
A
Y
M
E
N
V
V
-
S
D
A
L
G
R
Y
S
----------------------------------------------------
27
Fugue
42.70
9%
-125
- C- -
4E40
-
?
A:
[3-247]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GEIKVELED
S
D
D
V
A
A
A
C
E
L
R
A
Q
L
A
G
V
S
I
A
S
G
I
L
L
R
P
A
V
I
R
N
A
T
T
E
F
S
R
K
K
S
E
D
I
L
A
K
G
G
A
A
V
E
R
A
S
A
A
V
D
R
V
SGLDKTN
E
T
A
Q
K
V
R
K
A
A
A
V
A
H
H
A
L
E
H
V
K
E
E
V
E
I
V
A
K
K
V
N
E
I
I
E
L
T
A
G
A
T
E
H
A
K
G
A
K
A
N
G
D
A
S
A
V
K
V
S
N
L
L
A
R
A
K
E
SEN
Q
Y
V
K
E
A
A
E
E
C
S
E
S
T
N
Y
D
V
T
A
K
S
L
A
A
A
L
D
K
L
---
P
G
V
K
E
D
--
N
--------------------
A
-
V
K
T
T
F
------
Q
S
I
L
T
S
---------
L
D
N
L
D
K
D
V
-
K
S
V
E
Q
R
A
E
E
L
E
T
A
L
E
K
A
E
R
Q
L
E
K
A
E
K
A
A
E
E
A
E
T
E
S
S
K
V----------------------
30
Fugue
40.05
13%
22
- C3 -
4ZH0
-
?
A:
[27-527]
Q
D
L
S
D
R
Y
E
S
L
N
N
L
L
N
R
Y
S
T
L
N
T
L
I
K
L
S
A
D
P
S
A
I
N
A
V
R
E
N
L
G
A
S
A
K
N
L
I
G
DKANS
P
A
Y
Q
A
V
L
L
A
I
N
A
A
V
G
F
W
N
V
VGYV
T
Q
C
G
G
N
A
NGQKSI
S
S
K
T
I
F
N
NEPGYRST
S
I
T
C
S
L
N
GHSPGYYGPMS
I
E
N
F
K
K
L
N
E
A
Y
Q
I
L
Q
T
A
L
K
R
GLPALKEN
N
G
K
V
N
V
T
Y
T
Y
T
C
S
G
D
GNNNCSSQVTGVNNQK
D
G
T
K
T
K
I
Q
T
I
DG
K
S
V
T
T
T
I
S
S
K
V
V
D
SRADGNTTG
V
S
Y
T
E
I
T
N
K
L
E
GVPDS
A
Q
A
L
L
A
Q
A
S
T
L
I
N
T
I
N
N
A
C
P
Y
F
H
APKFSTTTGK
I
C
G
A
F
S
E
E
I
S
A
I
Q
K
M
I
T
D
A
Q
E
L
V
N
Q
T
S
V
I
N
E
H
EQT
T
P
V
G
N
NNGKPFNPFTDASF
A
Q
G
M
L
A
N
A
S
A
Q
A
K
M
L
N
L
A
E
Q
V
G
Q
A
I
NPERLSG
T
F
Q
N
F
V
K
G
FLATCNNPSQGSAPGTVTTQTFA
S
G
C
A
---------
Y
V
G
Q
T
I
T
N
L
K
N
S
I
---
A
H
F
G
T
Q
--
E
--------------------
Q
-
Q
I
Q
Q
A
------
E
N
I
A
D
T
---------
L
V
N
F
K
S
R
Y
-
S
E
L
G
N
T
Y
N
S
I
T
T
A
L
S
N
IPNAQSLQNA
V
S
K
K
N
N
PYSPQGID
T
N
Y
Y
L
N
Q
N
S
Y
N
Q
I
Q
T
I
N
Q
E
L
33
Fugue
37.20
16%
3
- C3 -
1NEI
-
YOAG_ECOLI
A:
[1-60]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
G
K
A
T
Y
T
V
T
V
T
N
N
S
N
G
V
S
V
D
Y
E
T
E
T
P
---
M
T
L
L
V
P
--
E
--------------------
V
-
A
A
E
V
I
------
K
D
L
V
N
T
---------
V
R
S
Y
D
T
E
N
-
E
H
D
V
C
G
W
-----------------------------------------------------
6
HHSearch
36.37
24%
-0
- C3 -
4AFL
-
ING4_HUMAN
A:
[7-39]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
E
H
Y
L
D
S
I
---
E
N
L
P
-----------------------------
F
E
L
------
Q
R
N
F
Q
L
---------
M
R
D
L
D
Q
R
T
-
E
D
L
K
--------------------------------------------------------
11
HHSearch
35.73
44%
64
- C2 -
1DIP
1
T22D3_PIG
A:
[1-9]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
D
L
V
K
N
H
L
M
---------------------------------------------------------------------------------------------------------------------------------------
18
HHSearch
35.04
38%
78
- C3 -
3NMD
-
KGP1_HUMAN
A:
[48-71]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
L
D
Q
K
D
E
L
I
Q
M
L
Q
N
E
L
D
K
Y
R
S
V
I
---
R
-----------------------------------------------------------------------------------------------------------------------------