@TOME V2.3
(Nov 2016)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : bsu08200: (2016-06-12 )
MMQKIQRFGSAMFVPVLLFAFAGIIVGISTLFKNKTLMGPLADPDGFWYQCWYIIEQGGWTVFNQMPLLFAIGIPVALAKKAQARACLEALTVYLTFNYFVSAILTVWGGAFGVDMNQEVGGTSGLTMIAGIKTLDTNIIGAIFISSIVVFLHNRYFDKKLPDFLGIFQGSTYIVMISFFIMIPIALAVSYIWPMVQSGIGSLQSFLVASGAVGVWIYTFLERILIPTGLHHFIYTPFIYGPAVAEGGIVTYWAQHLGEYSQSAKPLKELFPQGGFALHGNSKIFGIPGIALAFYVTAKKEKKKLVAGLLIPVTLTAIVAGITEPIEFTFLFISPFLFAVHAVLAATMSTVMYMAGVVGNMGGGLIEAVTLNWIPLFGSHGMTYVYQILIGLSFTAIYFFVFRFLILKFNIATPGREKDEQQETKLYSKKEYRERKNKDETASAAETADDTAFLYIEALGGKDNITEVTNCATRLRVSVKDETKVEPDSVFRALGAHGVVRNGKAFQVIIGLSVPQMRERVEKILNQ
Atome Classification :
(20 SA)
-----.........10........20........30........40........50.......--.60........70........----80......---..90........100.......110.......120.......130.......140.......150......----.160.......170.......180---........190........200.-......--210..-----.....220.......230...-...----.240.......250.......260.......270-----------........280.......290.----......300.......310......--------------------.320..-.....----330......---..340--.........--350.......----360.-.......370.......380........390.......400.......410.......420.......430.......440..-.....450.......460-........470.....--..480.......490..-.....500.....----..510.-.-......520.....-----------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
-----M
M
Q
K
I
Q
R
FGS
A
M
F
V
P
V
L
L
F
A
F
A
G
I
I
V
G
I
S
T
L
FKNKTLMGPLADPDG
F
W
Y
Q
C
W
Y
I
I
EQG--
G
W
T
V
F
NQM
P
L
L
F
AIGI
P
V
A
L
A
----
K
K
A
Q
A
R
A
C
---
L
E
A
L
T
V
Y
L
T
F
N
Y
F
V
S
A
I
L
T
VWGGAFGVDMNQEVGGTSG
L
T
M
I
A
G
I
K
TL
D
T
N
I
I
G
A
I
F
I
S
S
I
V
V
F
L
HNR
Y
F
D
----
K
KL
P
D
F
L
G
I
FQG
S
T
Y
I
V
M
I
S
F
F
I
----
M
I
P
I
A
L
A
V
S
-
Y
I
W
P
M
V
Q
S
G
I
G
S
L
-
Q
S
F
L
V
A--SGA
V
G
-----
V
W
I
Y
T
F
L
E
R
ILIPTG
L
H
H
F
I
Y-TPF----IYGPAVAEG
G
I
V
T
Y
W
A
Q
H
L
G
E
Y
S
Q
S
AK
P
L
K
E
LF------------PQG
G
F
A
LHGN
S
K
I
F
GIPGI
A
L
A
----
F
Y
V
TA
K
K
E
K
K
K
L
V
A
G
L
L
I
P
V
T
L
T
A
I
--------------------
V
A
GITE-P
I
E
F
T
----
F
-
L
F
I
S
P
F
L
---
F
A
V
----
H
A
V
L
A
A
T
M
S
--
T
V
M
Y
M
A
G
V
V
G----N-MG-G
G
L
I
E
A
V
T
L
N
W
I
PLFGSH
G
-
M
T
Y
V
Y
Q
I
L
I
G
L
S
F
T
A
I
Y
F
F
V
F
R
F
L
I
L
K
F
NIATPGRE
K
D
E
Q
Q
E
T
K
L
Y
S
K
K
E
Y
R
E
RKNKDETASA-AETADD
T
A
F
L
Y
I
E
ALGG--KD
N
I
T
E
V
T
N
C
A
T
R
L
R
V
--
S
VKDETKV
E
P
D
S
V
F
R
A
L
-GAHGVVRNG
K
A
F
Q
----
V
I
I
-GL-S-
V
P
Q
M
R
E
R
V
E
K
I
LNQ-----------------------------------
25
Fugue
74.70
16%
-152
- C1 -
4XVK
4
DPOLN_HUMAN
A:
[1-666]
KKHFC
D
I
R
H
L
D
D
W
A
K
S
Q
L
I
E
M
L
K
Q
A
A
A
L
V
I
T
V
M
Y
T
--
D
G
S
T
Q
L
G
A
D
Q
T
P
V
S
S
V
R
G
I
V
V
L
V
K
R
Q
AC
G
P
V
L
E
G
F
V
S
D
D
P
C
I
Y
I
Q
I
E
H
S
AIWD
Q
E
Q
E
A
H
Q
Q
---
F
A
R
N
V
L
F
Q
T
M
K
C
K
C
P
V
I
C
F
N
-
A
K
D
F
V
R
I
V
L
Q
F
F
G
N
D
G
S
W
K
H
V
A
D
F
I
G
L
D
P
R
I
A
A
W
L
I
D
P
S
D
A
T
P
S
F
E
D
L
V
E
----
K
Y
C
E
K
S
I
T
V
K
V
N
S
T
Y
G
N
S
S
R
N
I
V
----
N
Q
N
V
R
E
N
L
K
-
T
L
Y
R
L
T
M
D
L
C
S
K
L
-
K
D
Y
G
L
W
--
Q
L
F
R
T
LELPL
I
P
I
L
A
V
M
E
S
H
A
I
Q
V
N
K
E
E
M
E
K
-
T
S
A
----
L
L
G
A
R
L
K
E
L
E
Q
E
A
H
F
V
A
G
E
R
F
L
I
T
S
N
N
Q
L
R
E
I
L
FGKLKLHLLSYP
S
T
S
E
A
V
L
N
A
L
R
D
L
H
P
L
P
K
I
I
L
E
-----
Y
R
Q
V
H
K
I
K
S
T
F
V
D
G
L
L
A
C
M
K
K
G
S
I
S
S
T
W
N
QTGTVTG
R
L
S
A
K
HPN
I
Q
G
I
S
K
H
P
I
Q
I
T
T
P
KK
I
-
L
T
I
S
P
R
A
---
M
F
V
S
S
K
G
H
T
F
L
A
A
D
F
S
Q
I
E
L
R
I
L
T
H
L
S
G
D
P
E
L
L
-
K
L
-
D
D
V
F
S
T
L
T
S
Q
W
K
D
V
P
V
E
Q
V
-
T
H
A
D
R
E
Q
T
K
K
V
V
Y
A
V
V
Y
G
A
G
K
E
R
L
A
A
C
L
G
V
P
I
Q
E
A
A
Q
F
L
E
S
F
L
Q
K
Y
K
K
I
K
D
F
A
R
A
A
I
A
Q
C
H
Q
T
G
C
V
V
S
I
M
G
R
R
R
P
L
P
R
I
H
A
HD
Q
Q
L
R
A
Q
A
E
R
Q
A
V
N
F
V
V
Q
G
S
A
A
D
L
C
K
L
A
M
I
H
V
F
T
A
V
-
A
A
S
H
T
L
T
A
R
L
V
A
Q
IHD
E
L
L
F
-
E
V
-
E
-
D
P
Q
I
P
E
C
A
A
L
V
R
R
T
M
E
S
LEQVQALELQLQ
V
P
L
K
V
S
L
S
A
GRSWGHLVPLQ
8
HHSearch
50.47
37%
-135
- C2 -
3BP3
1
PTGCB_ECOLI
A:
[3-81]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
S
E
M
A
P
A
L
V
A
A
F
G
G
--
K
E
N
I
T
N
L
D
A
C
I
T
R
L
R
V
--
S
V
A
D
V
S
K
V
D
Q
-
A
G
L
K
K
L
-
G
A
A
G
V
V
V
A
G
S
G
V
Q
----
A
I
F
-
G
T
-
K
-
S
D
N
L
K
T
E
M
D
E
Y
I
R
N
-----------------------------------
19
Fugue
50.33
34%
-157
- C2 -
3IPJ
1
?
A:
[1-95]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
N
-
A
N
K
Y
N
K
I
A
N
E
L
I
K
I
I
G
---
E
D
N
I
I
S
I
T
H
C
A
T
R
L
R
V
--
M
V
K
D
R
E
I
I
N
D
K
K
V
E
K
V
D
-
E
V
K
G
V
F
F
T
S
G
Q
Y
Q
----
I
I
L
-
G
T
G
I
-
V
N
K
V
Y
A
E
V
E
K
M
G
L
K
TLSKKEQDEL-------------------------
10
HHSearch
48.56
33%
-180
- C2 -
3IPJ
1
?
A:
[5-84]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
Y
N
K
I
A
N
E
L
I
K
I
I
-
G
--
E
D
N
I
I
S
I
T
H
C
A
T
R
L
R
V
--
M
V
K
D
R
E
I
I
N
D
-
K
K
V
E
K
V
D
E
V
K
G
V
F
F
T
S
G
Q
Y
Q
----
I
I
L
-
G
T
-
G
I
V
N
K
V
Y
A
E
V
E
K
M
G
L
------------------------------------
1
PsiBlast_PDB
48.12
37%
-139
- C2 -
1O2F
-
PTGCB_ECOLI
B:
[314-388]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
M
A
A
A
L
-
V
A
A
F
G
G
--
K
E
N
I
T
N
L
D
A
C
I
T
R
L
R
V
--
S
V
A
D
V
S
K
V
D
-
Q
A
G
L
K
K
L
-
G
A
A
G
V
V
V
A
G
S
G
V
Q
----
A
I
F
-
G
T
-
K
-
S
D
N
L
K
T
E
M
D
E
Y
I
-------------------------------------
7
HHSearch
47.10
18%
-151
- C2 -
3QNQ
8
?
A:
[19-424]
------
Q
R
H
L
L
A
I
R
D
G
L
V
L
T
M
P
F
L
I
I
G
S
I
F
L
I
I
S
T
L
P
I
P
G
Y
-
S
E
F
M
A
--
S
L
F
G
K
N
W
N
V
A
L
G
Y
P
--
V
S
A
T
F
N
I
M
A
L
I
A
V
F
G
I
A
Y
R
L
G
----
E
Y
Y
K
V
D
A
L
A
S
G
A
L
S
L
V
T
F
L
L
A
T
P
F
Q
V
A
Y
I
M
P
G
T
K
E
-
S
I
L
-----
V
D
G
V
I
P
A
A
L
M
G
----
S
Q
G
L
F
V
A
M
I
I
A
I
I
S
T
E
I
Y
R
F
L
V
Q
K
KM
I
I
K
M
P
E
T
V
P
P
A
V
T
R
S
F
A
A
L
I
P
G
F
I
V
V
T
V
V
W
I
I
R
L
I
F
E
H
T
T
F
G
S
I
H
N
V
V
G
K
L
L
Q
E
P
L
S
I
L
G
A
S
L
W
G
-----
A
V
I
A
V
I
L
V
H
V
L
W
A
C
G
I
H
G
A
T
I
V
G
G
V
M
S
P
I
W
L
S
L
M
D
Q
N
--------
R
I
A
F
Q
A
G
Q
-
D
----
V
P
N
------------
T
I
T
A
Q
F
F
D
-
L
W
I
Y
M
G
G
S
G
A
T
L
A
L
V
V
G
M
L
L
F
A
R
S
---
Q
Q
L
K
S
L
G
R
L
S
I
A
P
G
I
---------------------
F
N
I
N
E
-
M
V
T
F
G
----
M
P
I
V
M
N
P
L
L
L
I
P
F
I
V
----
V
P
V
V
L
T
I
V
S
--
Y
F
A
M
E
W
G
L
V
A
----
R
P
S
G
A
A
V
T
W
T
T
P
I
L
F
S
G
---
Y
-
L
G
S
G
G
K
I
S
G
-
V
I
L
Q
L
V
N
F
A
L
A
F
V
I
Y
L
P
F
L
K
I
W
D
K
-------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
PsiBlast_PDB
45.93
40%
-133
- C2 -
3BP3
1
PTGCB_ECOLI
A:
[11-79]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
A
A
F
G
G
--
K
E
N
I
T
N
L
D
A
C
I
T
R
L
R
V
--
S
V
A
D
V
S
K
V
D
-
Q
A
G
L
K
K
L
-
G
A
A
G
V
V
V
A
G
S
G
V
Q
----
A
I
F
-
G
T
-
K
-
S
D
N
L
K
T
E
M
D
E
Y
I
-------------------------------------
9
HHSearch
44.97
36%
-143
- C2 -
1IBA
-
A:
[15-89]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
A
P
A
L
V
A
A
F
G
G
--
K
E
N
I
T
N
L
D
A
C
I
T
R
L
R
V
--
S
V
A
D
V
S
K
V
D
Q
-
A
G
L
K
K
L
-
G
A
A
G
V
V
V
A
G
S
G
V
Q
----
A
I
F
-
G
T
-
K
-
S
D
N
L
K
T
E
M
D
E
Y
I
R
------------------------------------
4
PsiBlast_PDB
44.56
40%
-137
- C2 -
3BP8
-
PTGCB_ECOLI
C:
[6-74]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
A
A
F
G
G
--
K
E
N
I
T
N
L
D
A
C
I
T
R
L
R
V
--
S
V
A
D
V
S
K
V
D
-
Q
A
G
L
K
K
L
-
G
A
A
G
V
V
V
A
G
S
G
V
Q
----
A
I
F
-
G
T
-
K
-
S
D
N
L
K
T
E
M
D
E
Y
I
-------------------------------------
5
PsiBlast_PDB
43.46
38%
-146
- C2 -
3IPJ
1
?
A:
[18-82]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
--
E
D
N
I
I
S
I
T
H
C
A
T
R
L
R
V
--
M
V
K
D
R
E
I
I
N
D
K
K
V
E
K
V
D
-
E
V
K
G
V
F
F
T
S
G
Q
Y
Q
----
I
I
L
-
G
T
-
G
I
V
N
K
V
Y
A
E
V
E
K
M
--------------------------------------
6
PsiBlast_CBE
43.13
38%
-140
- C2 -
3IPJ
2
?
B:
[18-82]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
--
E
D
N
I
I
S
I
T
H
C
A
T
R
L
R
V
--
M
V
K
D
R
E
I
I
N
D
K
K
V
E
K
V
D
-
E
V
K
G
V
F
F
T
S
G
Q
Y
Q
----
I
I
L
-
G
T
-
G
I
V
N
K
V
Y
A
E
V
E
K
M
--------------------------------------
2
PsiBlast_PDB
42.46
38%
-136
- C2 -
1IBA
-
A:
[15-88]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
A
P
A
L
-
V
A
A
F
G
G
--
K
E
N
I
T
N
L
D
A
C
I
T
R
L
R
V
--
S
V
A
D
V
S
K
V
D
-
Q
A
G
L
K
K
L
-
G
A
A
G
V
V
V
A
G
S
G
V
Q
----
A
I
F
-
G
T
-
K
-
S
D
N
L
K
T
E
M
D
E
Y
I
-------------------------------------
16
HHSearch
29.32
12%
-221
- C2 -
1KKL
-
PTHP_BACSU
H:
[69-94]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
G
A
E
I
T
----
I
S
A
S
G
A
-
D
-
E
N
D
A
L
N
A
L
E
E
T
M
K
------------------------------------
22
Fugue
26.42
30%
78
- C2 -
1WNM
-
?
A:
[1-23]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
S
P
E
Q
R
A
T
R
L
K
R
M
S
E
Y
A
A
K
R
L
S
S
----------------------------------------------------------------------------------------------------------------------------------------
20
Fugue
24.29
12%
6
- C2 -
2K6I
-
Y223_METJA
A:
[1-47]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
G
V
S
V
M
E
A
I
K
E
V
K
L
A
E
E
Q
A
V
K
E
I
E
E
A
K
N
R
A
E
Q
I
K
A
E
A
I
-
E
E
A
K
K
L
I
A
C
-------------------------------------------------------------------------------------------------------------------------
26
Fugue
23.99
12%
135
* C2 *
1A93
2
A:
[1-32]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
C
G
G
V
Q
A
E
E
Q
K
L
I
S
E
E
D
L
L
R
K
R
R
E
Q
L
K
H
K
L
-
E
Q
L
-------------------------------------------------------------------------------------------------------------------------------
12
HHSearch
22.16
21%
-51
- C2 -
4BJJ
1
SFC1_SCHPO
A:
[25-43]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
D
A
F
F
Q
T
L
G
G
--
V
Q
S
I
Q
K
A
C
Q
------------------------------------------------------------------------------------------------------
13
HHSearch
21.06
16%
-279
- C2 -
4B19
-
?
A:
[7-25]
--------------------------------------------------------------------------------------------------------------------------------------------------------
I
I
A
P
V
I
S
G
C
A
I
A
F
F
-
S
Y
W
L
S
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
24
Fugue
20.66
14%
137
- C2 -
1Y03
-
ANP3_MYOSC
A:
[1-35]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
S
M
N
A
P
A
R
A
A
A
K
T
A
A
D
A
L
A
A
A
K
K
T
A
A
D
A
A
A
A
A
A
A
A
------------------------------------------------------------------------------------------------------------------------------------
15
HHSearch
19.53
25%
-213
- C2 -
2KV5
-
?
A:
[7-26]
-------------------------------------------------------------------------------------------------------------------------------------------------------
L
V
I
A
P
I
F
V
G
L
V
L
E
M
I
-
S
R
V
L
D
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------