@TOME V2.3
(Nov 2016)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : bsu08330: (2016-06-13 )
MKKILAICGIELSLIFKKPQNYLIMFAAPLLLTFVFGSMLSGNDDKVRLAIVDQDDTILSQHYIRQLKAHDDMYVFENMSESKASEKLKQKKIAGIIVISRSFQTQLEKGKHPELIFRHGPELSEAPMVKQYAESALATLNIQVTAAKTASQTAGENWKAAYKTVFAKKHEDIVPAVTRQTLSDKKEGAEASDTASRAAGFSILFVMLTMMGAAGTILEARKNGVWSRLLTASVSRAEIGAGYVLSFFVIGWIQFGILLLSTHWLFGINWGNPAAVIVLVSLFLLTVVGIGLMIAANVRTPEQQLAFGNLFVIATCMVSGMYWPIDIEPKFMQSIAEFLPQKWAMSGLTEIIANGARVTDILGICGILLAFAAITFAAGLKALRA
Atome Classification :
(20 SA)
.......--..10........20------........30........40........50...-..-...60........70-.--....--.--..80..----------......90.------...-----....100.......110....---..-.--120.......130---.--.......140....-...150-....-...160.......170.-...-----...180.....-..190.......200......-.-210.......220.----......230.......240.......250..---------.....260.-----......270..----.....280.......290--.........300---------.......310.......320.......330.......340.........350.........360...-----....370-......---------------.380...---
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
M
K
K
I
L
A
I--CG
I
E
L
S
L
I
F
KKPQ
N
------
Y
L
I
M
F
A
A
P
L
L
L
T
F
V
F
G
S
MLSGND
D
K
V
R
L
A
I
VDQ-D
D
-
T
I
L
S
Q
H
Y
I
R
Q
L
K
AHD-
D
--
M
Y
V
F
--E--NM
S
E
S
K
----------
A
S
E
K
L
K
Q
KK------
I
A
G
-----
I
I
V
I
S
R
S
F
Q
T
Q
LEKGKHP
E
L
I
---
F
R-H--GPELSE
A
P
M
V
K
Q
----
Y
--
A
E
SA
L
A
T
L
N
I
Q
V
T
A
-AKTASQ-TAGE-
N
W
K
A
A
Y
K
T
V
F
A
KKHE
D
I
-
V
P
A
-----
V
T
R
Q
T
L
S
D
K
KE-GAEASD
T
A
S
RAA
G
F
S
I
L
F
V
M
L
-
T
-
M
MGAA
G
T
I
L
E
A
RKN----
G
V
W
S
R
L
L
T
ASVSRAEI
G
A
G
Y
V
L
S
F
F
V
I
G
W
I
Q
---------
F
G
I
L
L
LST
H
-----
W
L
F
G
INWG
N
P
A
----
A
V
I
V
L
V
S
L
F
L
L
T
V
V
G
I
----
G
L
M
I
A
ANVRT
P
E
---------
Q
Q
L
AFG
N
L
F
V
I
A
T
C
M
VSG
M
Y
WPIDI
E
P
K
F
M
Q
S
I
A
E
F
L
P
--
Q
K
W
A
M
S
G
L
T
E
--
I
I
ANGA
R
V
T
D
I
L
G
I
C
-----
G
I
L
L
A
F
A
-
A
I
T
F
A
A
---------------
G
L
K
A
LRA---
39
Fugue
69.46
15%
-89
* C3 *
4Q6T
6
?
A:
[4-340]
A
P
F
V
L
A
Y
--
T
D
G
Q
V
----
E
A
S
Y
S
------
N
L
Q
A
F
H
R
N
L
S
A
V
G
L
G
S
T
Y
G
L
T
V
T
G
K
L
R
-----
Q
-
D
G
M
N
E
T
T
Q
N
I
I
R
F
A
K
S
Q
S
-
L
P
L
Y
P
T
V
--
S
--
D
Y
N
E
D
I
----------
G
A
F
---
D
P
A
------
I
S
H
-----
S
I
L
N
D
--------------------
R
-
A
--
L
S
A
G
T
V
K
Q
L
V
K
L
----
A
--
K
E
G
G
F
A
G
I
N
L
D
F
E
K
-
V
E
P
R
N
R
-
A
A
F
C
-
A
F
V
K
T
L
G
N
A
L
H
A
S
N
K
K
L
-
I
I
S
-----
I
P
P
K
L
S
D
T
E
P
E
-
Y
L
Q
G
Y
D
Y
K
A
L
G
A
A
V
D
--
Y
F
Q
V
M
T
Y
D
Q
V
G
P
G
W
S
S
G
G
F
H
N
----
E
A
W
P
-
G
P
E
S
G
F
D
W
Q
Q
A
L
L
S
Y
A
V
S
R
V
P
A
S
K
V
L
---------
A
G
L
P
T
-----------
Y
G
Q
D
Y
S
I
G
N
----
R
V
H
W
S
A
Y
Q
E
I
I
A
E
H
R
A
----
A
I
H
R
D
A
A
S
A
T
P
Y
---------
A
T
W
G
P
V
K
S
F
V
------
D
G
V
E
W
T
P
E
R
A
Q
P
-----
V
L
W
Y
D
--
D
A
A
S
I
K
T
K
T
A
--
L
V
T
R
-------
L
G
L
G
-----
G
-
T
S
V
W
A
M
G
Y
E
N
A
G
---------------
F
W
A
A
L
Q
S
G
L
K
38
Fugue
65.26
16%
-102
- C1 -
3ACP
-
RPN14_YEAST
A:
[1-417]
M
T
K
T
I
T
V
--
A
H
I
Q
Y
D
F
K
A
V
L
E
E
N
DE
N
D
D
E
F
Y
I
N
V
D
K
N
L
N
E
I
K
E
H
K
I
V
V
L
G
N
S
R
G
V
D
A
G
K
G
N
T
-
F
E
-
K
V
G
S
H
L
Y
K
A
R
L
D
G
H
D
-
F
--
L
F
N
T
--
I
--
I
R
D
G
S
K
MLK
R
A
D
Y
T
A
V
D
T
A
K
L
Q
M
R
R
F
-----
I
L
G
T
TEG
D
I
K
V
L
D
S
N
F
N
L
Q
R
E
I
D
Q
A
----------
H
--
V
S
E
I
T
K
L
K
F
F
P
S
GE
A
L
I
--
S
S
S
Q
D
M
Q
L
K
I
W
S
V
K
-
D
G
S
N
P
R
-
T
L
I
G
-
H
R
A
T
V
T
D
I
A
I
I
D
R
G
R
N
V
-
L
S
A
S
LDGT
I
R
L
W
E
C
G
T
G
T
T
-
I
H
T
F
N
R
K
E
N
P
H
D
G
V
N
S
I
A
L
F
V
-
G
-
T
D
R
Q
L
H
E
I
S
T
S
K
K
N
N
LEF
G
T
Y
G
K
Y
V
I
A
G
H
V
S
G
V
I
T
V
H
N
V
F
S
K
E
--
Q
T
I
Q
---------
L
P
S
K
F
T
C
S
C
-----
N
S
L
T
V
D
G
N
N
A
N
------------
Y
I
Y
A
G
Y
E
N
----
G
M
L
A
Q
W
D
L
R
S
P
E
CPV
G
E
F
L
I
N
E
G
T
P
I
N
N
V
Y
F
A
A
G
A
L
F
V
S
S
G
F
D
T
S
I
K
L
D
I
I
S
D
-
P
E
S
E
R
--
P
A
I
E
F
E
T
P
T
F
--
L
V
S
N
D
D
E
V
S
Q
F
C
Y
V
S
DDES
N
G
E
V
L
E
V
G
-
K
N
N
F
C
A
---------------
L
Y
N
L
S
N
P
---
22
HHSearch
55.25
23%
-110
- C2 -
3CNI
2
?
A:
[11-108]
------------------------------------------------------
Q
K
V
A
I
V
R
E
-
D
T
-
G
T
I
A
E
L
A
E
K
A
L
G
N
------
M
V
D
I
--
V
YA
G
S
D
L
K
E
----------
A
E
E
A
V
K
K
E
K
------
A
P
A
-----
I
I
V
I
P
K
G
F
S
Q
S
L
E
S
G
E
K
A
R
L
E
---
I
V
-
W
Y
L
R
G
T
G
L
S
E
A
V
S
T
G
----
T
--
I
S
S
L
I
E
S
L
K
V
Q
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
PsiBlast_PDB
49.96
30%
-66
- C2 -
3CNI
1
?
A:
[12-92]
-------------------------------------------------------
K
V
A
I
V
R
E
-
D
T
-
G
T
I
A
E
L
A
E
K
A
L
G
N
M
V
-
D
--
I
-
V
Y
--
A
--
G
S
D
L
K
E
----------
A
E
E
A
V
K
K
E
K
------
A
P
A
-----
I
I
V
I
P
K
G
F
S
Q
S
L
E
S
G
E
K
A
R
L
E
I
V
W
Y
L
-
R
--
G
T
G
L
S
E
A
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
34
Fugue
49.65
13%
-39
- C- -
1GSO
-
PUR2_ECOLI
A:
[-2-426]
-
M
K
V
L
V
I
G
N
G
G
R
E
H
A
L
A
W
K
A
A
Q
S
-----------
P
L
V
E
T
V
F
V
A
P
G
N
A
G
T
A
L
E
P
A
L
Q
N
V
A
I
G
V
-
T
D
-
I
P
A
L
L
D
F
A
Q
N
E
K
I
---
D
--
L
T
I
V
G
P
E
--
A
P
L
V
K
G
----------
V
V
D
T
F
R
A
A
G
------
L
K
I
-----
F
G
P
T
A
G
A
A
Q
L
E
G
S
K
A
F
T
K
D
F
L
---
A
R
-
H
--
K
I
P
T
A
E
Y
Q
N
F
T
E
----
V
E
P
A
L
A
Y
L
R
E
K
G
A
P
I
V
I
-
K
A
K
G
V
I
-
V
A
M
T
-
L
E
E
A
E
A
A
V
H
D
M
L
A
G
N
A
F
-
G
D
A
-----
G
H
R
I
V
I
E
E
F
L
D
-
G
E
E
A
S
F
I
V
M
V
D
G
E
H
V
L
P
M
A
T
S
-
Q
-
D
H
K
R
V
G
D
K
D
T
G
P
N
T
GGM-
G
A
Y
S
P
A
P
V
V
T
D
D
V
H
Q
R
T
M
E
R
I
I
W
P
T
V
K
G
M
A
A
E
GN
T
Y
T
G
F
L
Y
A
G
L
M
I
D
K
Q
G
N
P
K
V
I
E
F
N
C
R
F
G
D
L
E
----
T
Q
P
I
M
L
R
M
K
--
S
D
L
V
E
----
L
C
L
A
A
C
E
S
K
L
D
E
---------
K
T
S
E
W
D
E
R
A
S
L
G
V
V
M
A
A
G
G
Y
P
G
D
Y
R
T
G
D
V
I
H
G
L
P
L
E
E
V
A
G
G
K
V
F
H
A
G
T
K
L
AQ
V
V
T
N
G
G
R
V
L
C
V
T
A
L
G
-----
H
T
V
A
E
A
Q
-
K
R
A
Y
A
L
M
TDIHWDD
C
F
C
R
KDI
G
W
R
A
I
E
R
---
4
PsiBlast_PDB
49.05
25%
-193
- C2 -
4RCN
-
?
A:
[876-967]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
P
D
Y
G
V
G
I
V
T
A
L
V
R
V
E
G
V
P
---------
Y
G
L
I
A
N
S
T
H
-----
H
L
G
G
A
I
D
A
E
A
A
D
K
A
G
D
F
L
A
L
C
E
S
F
G
L
P
V
I
S
L
C
D
T
P
G
F
M
V
G
P
D
A
E
T
Q
A
---------
A
V
R
R
F
G
R
M
F
V
L
----------------------------------------------------------------------------------------------------
35
Fugue
48.91
18%
-102
- C2 -
1VHX
-
YQGF_BACSU
A:
[0-139]
-----------------------------------------
S
L
R
I
L
G
L
D
L
G
T
K
T
L
G
V
A
L
S
D
E
M
G
W
-
T
A
Q
G
I
E
T
I
K
I
N
E
A
E
G
-
D
--
Y
G
----------
L
S
R
----------
L
S
E
L
I
K
D
Y
T
------
I
D
K
-----
I
V
L
G
F
P
------------------
K
N
M
N
--
G
T
V
G
P
R
G
E
A
S
Q
T
----
F
--
A
K
V
L
E
T
T
Y
N
V
P
V
V
L
W
D
E
R
L
T
T
M
A
A
E
K
M
L
I
A
A
D
V
S
R
Q
K
R
K
K
V
I
D
K
M
A
A
V
M
----
I
L
Q
G
Y
L
D
S
L
N
E
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
13
PsiBlast_PDB
47.26
30%
-119
- C2 -
3DJ4
1
GLMU_MYCTU
A:
[148-226]
-----------------------------------------
F
G
Y
G
R
I
L
R
T
Q
D
H
E
V
-
M
A
I
V
E
Q
-
T
D
-
A
T
P
S
Q
R
E
I
R
E
V
N
A
---
G
--
V
Y
A
F
--
D
--
I
A
A
L
R
S
----------
A
L
S
R
L
S
S
N
N
AQQELY
L
T
D
-----
V
I
A
I
L
R
S
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
32
Fugue
47.23
15%
-62
- C2 -
3CNI
2
?
A:
[11-155]
------------------------------------------------------
Q
K
V
A
I
V
R
E
-
D
T
-
G
T
I
A
E
L
A
E
K
A
L
G
--
N
M
V
--
D
I
V
Y
--
A
--
G
S
D
L
K
E
----------
A
E
E
A
V
K
K
E
K
------
A
P
A
-----
I
I
V
I
P
K
G
F
S
Q
S
L
E
S
G
E
K
A
R
L
E
---
I
V
-
W
--
Y
L
R
G
T
--
G
L
S
E
A
----
V
--
S
T
G
T
I
S
S
L
I
E
S
L
K
V
-
Q
L
A
S
F
L
-
L
N
D
P
-
K
K
A
Q
L
L
F
D
P
L
E
I
V
Q
H
T
Y
-
L
R
G
-----
S
L
F
K
N
H
S
P
E
A
I
M
N
V
F
Y
S
Q
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
27
HHSearch
46.85
18%
-118
- C2 -
3FKQ
-
?
A:
[20-77]
----------------------------------------------------
M
K
I
K
V
A
L
L
D
K
-
D
K
-
E
-
Y
L
D
R
L
T
G
V
F
N
T
-
K
-
Y
AD
K
L
E
V
--
Y
S
-
F
T
D
E
K
N
----------
A
I
E
S
V
K
E
Y
R
------
I
D
V
-----
L
I
A
E
E
D
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
17
PsiBlast_PDB
46.42
30%
-112
- C2 -
4HCQ
1
GLMU_MYCTU
A:
[154-232]
-----------------------------------------
F
G
Y
G
R
I
L
R
T
Q
D
H
E
V
-
M
A
I
V
E
Q
-
T
D
-
A
T
P
S
Q
R
E
I
R
E
V
N
A
---
G
--
V
Y
A
F
--
D
--
I
A
A
L
R
S
----------
A
L
S
R
L
S
S
N
N
AQQELY
L
T
D
-----
V
I
A
I
L
R
S
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
18
PsiBlast_PDB
45.87
30%
-111
- C2 -
4G3P
2
?
A:
[154-232]
-----------------------------------------
F
G
Y
G
R
I
L
R
T
Q
D
H
E
V
-
M
A
I
V
E
Q
-
T
D
-
A
T
P
S
Q
R
E
I
R
E
V
N
A
---
G
--
V
Y
A
F
--
D
--
I
A
A
L
R
S
----------
A
L
S
R
L
S
S
N
N
AQQELY
L
T
D
-----
V
I
A
I
L
R
S
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
12
PsiBlast_PDB
45.51
30%
-98
- C2 -
3D98
-
GLMU_MYCTU
A:
[148-219]
-----------------------------------------
F
G
Y
G
R
I
L
R
T
Q
D
H
E
V
-
M
A
I
V
E
Q
-
T
D
-
A
T
P
S
Q
R
E
I
R
E
V
N
A
---
G
--
V
Y
A
F
--
D
--
I
A
A
L
R
S
----------
A
L
S
R
L
S
S
N
N
AQQ
E
L
Y
L
T
D
-----
V
I
A
I
L
R
S
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
20
PsiBlast_PDB
45.21
30%
-92
- C2 -
4G3S
2
GLMU_MYCTU
A:
[154-232]
-----------------------------------------
F
G
Y
G
R
I
L
R
T
Q
D
H
E
V
-
M
A
I
V
E
Q
-
T
D
-
A
T
P
S
Q
R
E
I
R
E
V
N
A
---
G
--
V
Y
A
F
--
D
--
I
A
A
L
R
S
----------
A
L
S
R
L
S
S
N
N
AQQELY
L
T
D
-----
V
I
A
I
L
R
S
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
15
PsiBlast_PDB
45.20
30%
-94
- C2 -
3ST8
1
GLMU_MYCTU
A:
[154-225]
-----------------------------------------
F
G
Y
G
R
I
L
R
T
Q
D
H
E
V
-
M
A
I
V
E
Q
-
T
D
-
A
T
P
S
Q
R
E
I
R
E
V
N
A
---
G
--
V
Y
A
F
--
D
--
I
A
A
L
R
S
----------
A
L
S
R
L
S
S
N
N
AQQELY
L
T
D
-----
V
I
A
I
L
R
S
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
30
HHSearch
45.15
18%
-157
- C2 -
3JV9
1
?
A:
[5-61]
-----------------------------------------------------
A
F
K
L
G
L
I
F
T
-
V
A
-
P
Y
L
L
P
K
L
I
V
S
L
R
R
T
A
-
P
--
K
M
P
L
--
M
L
E
E
N
Y
T
H
T
----------
L
T
E
S
L
K
R
G
D
------
V
D
A
-----
I
I
V
A
E
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
14
PsiBlast_PDB
45.06
30%
-91
- C2 -
3SPT
1
GLMU_MYCTU
A:
[154-225]
-----------------------------------------
F
G
Y
G
R
I
L
R
T
Q
D
H
E
V
-
M
A
I
V
E
Q
-
T
D
-
A
T
P
S
Q
R
E
I
R
E
V
N
A
---
G
--
V
Y
A
F
--
D
--
I
A
A
L
R
S
----------
A
L
S
R
L
S
S
N
N
AQQELY
L
T
D
-----
V
I
A
I
L
R
S
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
PsiBlast_PDB
44.87
30%
-105
- C2 -
3D8V
1
GLMU_MYCTU
A:
[148-220]
-----------------------------------------
F
G
Y
G
R
I
L
R
T
Q
D
H
E
V
-
M
A
I
V
E
Q
-
T
D
-
A
T
P
S
Q
R
E
I
R
E
V
N
A
---
G
--
V
Y
A
F
--
D
--
I
A
A
L
R
S
----------
A
L
S
R
L
S
S
N
N
AQQELY
L
T
D
-----
V
I
A
I
L
R
S
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
16
PsiBlast_PDB
44.54
30%
-89
- C2 -
4G87
1
GLMU_MYCTU
A:
[154-232]
-----------------------------------------
F
G
Y
G
R
I
L
R
T
Q
D
H
E
V
-
M
A
I
V
E
Q
-
T
D
-
A
T
P
S
Q
R
E
I
R
E
V
N
A
---
G
--
V
Y
A
F
--
D
--
I
A
A
L
R
S
----------
A
L
S
R
L
S
S
N
N
AQQELY
L
T
D
-----
V
I
A
I
L
R
S
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10
PsiBlast_PDB
44.49
30%
-108
- C2 -
2QKX
1
GLMU_MYCTU
A:
[150-221]
-----------------------------------------
F
G
Y
G
R
I
L
R
T
Q
D
H
E
V
-
M
A
I
V
E
Q
-
T
D
-
A
T
P
S
Q
R
E
I
R
E
V
N
A
---
G
--
V
Y
A
F
--
D
--
I
A
A
L
R
S
----------
A
L
S
R
L
S
S
N
N
AQQELY
L
T
D
-----
V
I
A
I
L
R
S
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------