@TOME V2.3
(Nov 2016)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : bsu08550: (2016-06-13 )
MVRNKEKGFPYENENKFQGEPRAKDDYASKRADGSINQHPQERMRASGKR
Atome Classification :
(17 SA)
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------.........10......----..20.......-----.30........40.---.......50------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MVRNKEKGFPYENENKF----QGEPRAKDDYA-----SKRADGSINQH
P
Q
E
---
R
M
RASGKR-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
13
Fugue
60.99
25%
23
- C10 -
4BS9
1
?
A:
[3-781]
PTALQIKPHFHVEIIEP
K
Q
V
Y
L
L
G
EQ
G
N
H
A
L
T
G
Q
L
Y
C
Q
I
LPFLNGEYT
R
E
Q
I
V
E
K
L
DGQVP
E
E
Y
I
D
F
V
L
S
R
L
V
E
K
GYLTEVAPELS
L
E
V
A
A
F
W
S
E
L
GIAPSV
V
A
E
G
L
K
Q
P
V
T
V
T
T
A
G
KGIR
E
G
I
V
A
N
L
A
A
A
L
E
E
A
G
I
Q
V
S
D
PTAQ
L
Q
V
V
L
T
DDYLQ
P
E
L
A
A
I
N
K
E
A
L
E
R
Q
Q
P
W
L
L
V
KPVGS
I
L
W
L
G
PLFVPGETGC
W
H
C
L
A
Q
R
L
Q
G
N
R
E
V
E
A
S
V
L
Q
Q
K
R
A
L
QERP
T
A
R
A
T
L
P
S
T
L
Q
T
G
L
Q
W
A
A
T
E
I
A
K
W
M
V
K
R
H
L
N
A
I
APGTARFPTLAG
K
I
F
T
F
N
QTTL
E
L
K
A
H
P
L
S
R
R
PQCPTCGDRE
T
L
Q
R
R
G
F
E
P
L
K
L
E
S
R
P
KHPE
Q
T
V
Q
K
Y
QHLIGPITGVVTE
L
V
R
S
R
A
S
G
L
C
E
A
I
E
R
Y
S
G
IFQ
G
D
E
P
R
---
K
R
A
-----
T
L
A
E
L
G
D
L
A
I
H
P
E
Q
---
C
L
H
F
S
D
R
Q
Y
D
N
R
E
S
S
N
E
R
ATVTHDWIPQRFDAS
K
A
H
D
W
T
P
V
W
S
LTEQ
T
H
K
Y
L
PTALCYYRYPFPPEHRFCRSDSNG
N
A
A
G
NT
L
E
E
A
I
L
Q
G
F
M
E
L
V
E
R
D
S
V
C
L
W
W
Y
N
R
V
S
R
P
A
V
DLSSFDE
P
Y
F
L
Q
L
Q
Q
F
Y
Q
T
Q
N
R
D
L
W
V
L
D
LTADLGI
P
A
F
V
G
V
S
N
R
KAGSSER
I
I
L
G
F
G
A
H
LD
P
T
V
A
I
L
R
A
L
T
E
V
N
Q
I
G
L
E
LDATDWLVNATLAASPYLVADAS
Q
P
L
K
T
AKDYPRRWSDD
I
Y
T
D
V
M
T
C
V
E
I
A
K
Q
A
G
L
E
T
L
V
L
D
QTRPDIGL
N
V
V
K
V
I
V
P
G
M
R
F
W
SRFGSGR
L
Y
D
V
P
V
K
L
GWRE
Q
P
L
A
EAQMNPTPMPF
18
Fugue
58.56
19%
-9
- C11 -
2I1T
-
JZTX3_CHIGU
A:
[1-36]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
G
E
C
G
G
F
W
W
K
C
G
-------
R
G
K
P
P
C
C
K
G
Y
A
-----
C
S
K
T
W
G
W
C
A
V
E
A
P
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
12
Fugue
54.38
12%
-25
- C10 -
1E68
-
?
A:
[1-70]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MAKEFGIPA
A
V
A
G
T
V
L
N
V
V
E
A
G
G
W
V
T
T
I
V
S
I
L
----
T
A
V
G
S
G
G
L
S
L
L
-----
A
A
A
G
R
E
S
I
K
A
Y
L
K
K
---
E
I
K
K
K
G
K
R
A
V
I
A
W--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
HHSearch
53.05
47%
-128
- C9 -
5AQ5
-
FIBL1_BPT5
A:
[1247-1263]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
S
G
R
V
K
Q
V
Y
A
--------
V
N
G
T
I
N
T
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
19
Fugue
50.55
16%
-21
* C10 *
2JX5
-
?
A:
[1-69]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------M
L
V
I
V
R
L
Q
D
Q
T
L
P
F
E
L
P
A
G
A
----
R
A
S
Q
L
S
N
L
L
S
S
SG
M
A
F
S
L
H
T
Q
G
R
V
L
S
E
A
A
E
L
N
D
K
M
V
I
D
A
F
V
P
A
DGAGLE-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
HHSearch
50.49
28%
2
- C10 -
2MNI
-
?
A:
[21-45]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
----
A
A
E
G
Y
A
E
D
E
L
L
-----
L
N
-
Q
M
G
K
V
N
D
T
P
E
E
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
17
Fugue
45.20
12%
-114
- C6 -
2LAQ
-
A70A_DROME
A:
[1-36]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
W
E
W
P
W
N
R
K
T
K
F
-------
I
S
N
R
D
K
W
C
-----
R
L
N
L
G
P
A
W
G
G
R
C
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
HHSearch
40.08
50%
22
- C2 -
4JN7
-
?
A:
[384-393]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
-----
P
K
R
P
D
G
S
Y
A
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
15
Fugue
36.64
18%
104
* C11 *
2M36
-
TXP3_APOSC
A:
[1-38]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
C
N
S
K
G
T
P
C
T
N
A
D
E
C
----
C
G
G
K
C
A
Y
N
V
W
-----------
N
C
I
G
G
G
C
S
K
---
T
C
G
Y
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
HHSearch
36.23
20%
-60
- C3 -
1T6G
-
XYNA_ASPNG
C:
[137-146]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
R
T
S
G
T
V
T
V
A
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
14
Fugue
35.92
25%
-
- C7 -
1UVQ
-
OREX_HUMAN
C:
[6-25]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
N
L
P
S
T
K
V
S
W
A
-----
A
V
G
G
G
G
S
L
V
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
16
Fugue
32.83
25%
30
- C8 -
1VPP
-
?
X:
[1-20]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
G
----
W
V
E
I
C
A
A
D
D
Y
G
-----
R
C
L
T
E
A
Q
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
HHSearch
32.41
29%
31
- C12 -
3WA1
-
?
A:
[366-379]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
R
E
F
T
-----
L
K
R
V
N
G
E
I
V
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
HHSearch
31.13
40%
78
- C1 -
1F5J
-
?
A:
[146-155]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
K
R
T
S
G
T
V
T
V
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
HHSearch
28.10
42%
145
* C12 *
1RK8
-
PYM_DROME
C:
[13-24]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
P
A
-----
T
K
R
P
D
G
T
W
R
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
HHSearch
21.75
33%
68
- C5 -
4NIQ
-
VFA1_YEAST
C:
[5-13]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
N
T
D
P
E
E
---
L
L
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
HHSearch
19.66
38%
-
- C4 -
4P3W
-
FBLI1_HUMAN
G:
[2-8]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
K
---
R
V
A
S
S
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------