@TOME V2.3
(Nov 2016)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : bsu09350: (2016-06-14 )
MDYADYDKALYYTHRSQWDNLLILMVRTEDDLLSKRIEHFLHAYHFEQDYAVLEKMLYSLLRYIDHATELTYEDQIALLT
Atome Classification :
(20 SA)
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------......--------.-.-.10.---------------...---.------..--.20......-..--30--.---.-.......40.-......-------------------.50.----.......60---...-.....70........80--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MDY
A
D
Y--------D-K-
A
L
Y
Y
---------------
T
H
R---S------QW--D
N
L
L
I
L
M
V
R-T
E
--
D
---
D
---
L
-
L
S
K
R
I
E
H
F
L
H
-
A
Y
HF
E
Q
-------------------
D
Y
A
V
----
L
E
K
M
L
Y
S
L
L
---
R
Y
I
-
D
H
A
T
ELTYE
D
Q
I
A
LLT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
HHSearch
71.85
25%
-298
- C3 -
3CQX
-
BAG2_MOUSE
C:
[32-86]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
H
L
M
S
L
Y
S
-
A
C
S
S
E
V
PPGPVD
Q
K
F
Q
S
I
V
I
G
CA
L
E
D
Q
K
K
----
I
K
R
R
L
E
T
L
L
---
R
N
I
-
D
N
S
D
K
A
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10
HHSearch
68.58
24%
-170
- C3 -
2XST
-
LCN15_HUMAN
A:
[98-149]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
D
Y
--------
S
-
S
F
A
V
L
Y
---------------
I
Y
K
E
L
E
G
------
A
L
--
S
T
M
V
Q
L
Y
S
R
-
T
Q
--
D
VS-
P
---
Q
-
A
L
K
S
F
Q
D
F
Y
P
-
T
L
G
L
P
K
-------------------
D
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
24
Fugue
60.78
16%
-132
* C5 *
4BFA
6
DUSC_ECOLI
A:
[22-338]
-------------------------------------------------------------------A
S
M
R
V
L
L
A
PMEGVLD
S
L
V
R
E
L
L
T
E
V
N
DYD
L
C
I
T
EFVRVVDQLLP
V
K
V
F
H
R
I
C
PELQNASRTPS
G
T
L
V
R
V
Q
L
L
G
Q
F
P
Q
W
L
A
E
N
A
A
R
A
V
E
L
GSW
G
V
D
L
N
CGCP
S
K
T
V
NGSGGG
A
T
L
L
K
D
P
E
L
I
Y
Q
G
A
K
A
M
R
E
A
VPAH
L
P
V
S
V
K
V
R
LGWDSGEK
K
F
E
I
A
D
A
V
Q
Q
A
GAT
E
L
V
V
HGRTKEQGYRAEHID
W
Q
A
I
G
D
I
R
Q
R
L
N
I
P
V
I
A
N
G
EIWD
W
Q
S
A
Q
Q
C
M
A
I
S
GCD
A
V
M
I
G
R
G
A
L
N
I
P
N
L
--------
S
-
R
-
V
V
K
Y
N--------------
E
P
R
---
M
------
P
W
--
P
E
V
V
A
L
L
Q
K
-
Y
T
--
R
-------
L
-
E
K
Q
G
D
T
G
L
Y
H
-
V
A
R
I
K
Q
-------------------
W
L
S
Y
----
L
R
K
E
Y
D
E
A
T
---
E
L
F
-
Q
H
V
R
V
L
N
N
S
P
D
I
A
R
A
I
Q
A
IDIEKL-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
22
Fugue
59.92
24%
-114
- C4 -
2JNY
-
?
A:
[1-61]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
S
L
--------
D
-
P
-
Q
L
L
E
---------------
V
L
A
---
C
------
P
K
--
D
K
G
P
L
R
Y
L
E
-
S
E
--
Q
---
L
---
L
-
V
N
E
R
L
N
---
L
-
A
Y
R
I
D
D
-------------------
G
I
P
V
----
L
L
I
-------------
D
E
A
T
E
W
T
P
N
N
L
E
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
HHSearch
57.29
17%
-147
- C3 -
1I4U
3
CRC1_HOMGA
A:
[109-162]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
T
D
Y
--------
S
N
Y
-
A
C
L
Y
---------------
S
C
I
---
D
Y
NFG--
Y
H
--
S
D
F
S
F
I
F
S
R
-
S
A
NL
A
---
D
---
Q
-
Y
V
K
K
C
E
A
A
F
K
-
N
I
N
V
D
T
-------------------
T
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
14
HHSearch
54.50
19%
-112
- C3 -
4O9S
9
RET4_HUMAN
A:
[140-196]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
T
D
Y
--------
D
T
Y
-
A
V
Q
Y
---------------
S
C
R
---
L
LNLDGT
C
A
--
D
S
Y
S
F
V
F
S
R
-
D
P
--
N
GLP
P
---
E
-
A
Q
K
I
V
R
Q
R
Q
E
-
E
L
C
L
A
R
-------------------
Q
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
HHSearch
54.05
17%
-89
- C3 -
2RA6
5
TRIC_TRIVU
A:
[104-156]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
K
P
--------
N
-
E
Y
A
K
F
I
---------------
F
Y
N
Y
H
D
G
------
K
V
--
N
V
V
A
N
L
F
G
R
-
T
P
--
N
---
L
S
N
-
E
-
I
K
K
R
F
E
E
D
F
M
-
N
R
G
F
R
R
-------------------
E
N
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
53.44
44%
-210
- C3 -
1Z5X
-
?
U:
[74-102]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
R
Q
L
Y
Q
L
I
EWA
K
H
I
-
P
H
F
T
E
L
P
V
E
D
Q
V
I
L
L
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
25
Fugue
51.10
20%
38
- C5 -
4YCZ
-
?
B:
[314-1176]
S
E
Y
R
Y
A
A
L
A
K
D
A
Y
QQ
M
G
T
A
PVTE
P
P
Q
V
I
L
G
T
E
D
L
L
S
R
L
Y
D
EKM
D
D
T
L
A
T
A
A
A
Q
L
A
A
L
W
R
E
H
V
D
ET
P
F
E
K
A
N
Y
L
A
N
L
A
L
Q
I
H
HP
L
P
Q
T
L
F
R
W
LNEYHMYGS
Q
V
D
D
I
L
R
H
RPSPACHSL
F
W
Q
A
V
F
I
A
LK
V
G
D
A
A
R
L
L
D
Q
AGWGHVYAYVN
V
Q
R
A
V
D
E
T
I
A
V
L
E
SCPT
L
F
R
V
R
A
R
G
L
L
E
H
L
R
R
F
A
E
GW
E
I
Y
E
N
L
N
I
V
F
D
I
V
L
GQ
Q
G
A
I
L
E
A
AQD
W
L
E
A
T
V
G
LAN
S
E
S
Y
L
D
R
L
A
R
A
F
H
T
AVESDFV
E
I
G
M
A
C
V
F
EDN
I
K
G
V
I
G
L
L
R
G
WSLPI
A
A
A
V
A
E
I
A
S
L
GKWLEVDG
I
K
D
S
T
L
V
Q
Y
A
Q
A
L
A
D
Y
--------
E
-
G
-
L
S
S
V
---------------
Q
D
R
---
D
------
G
W
--
E
L
S
I
S
V
L
G
R
M
P
E
R-
S
---
E
---
E
M
V
R
D
L
V
E
H
L
V
Q
-
Q
L
H
V
D
--------------------
S
N
A
T
----
V
D
R
L
W
F
L
L
N
---
E
L
G
M
I
E
F
A
E
D
T
T
E
T
Y
G
D
I
L
A
RDSHR
Y
G
E
A
M
W
Y
Y
A
L
AHR
P
N
K
V
R
E
V
M
N
L
L
T
S
Y
S
L
I
QPPAND
L
D
D
Y
L
Y
K
LLNDRK
N
T
L
E
Q
C
A
S
QDMEA
A
E
L
L
G
K
M
L
S
G
Y
A
S
L
R
Q
F
Y
D
I
RPH
A
T
P
L
S
R
R
K
Q
A
A
T
A
L
I
S
V
I
A
S
SDDEDF
L
L
A
L
L
G
E
A
L
V
F
V
SDPT
L
D
Q
I
D
V
L
L
K
A
I
E
D
L
Q
A
VGSR
V
Y
N
A
C
D
E
F
L
Q
L
V
L
ASAPGG
S
S
L
V
A
S
Q
L
Q
R
S
L
SGTGG
E
D
I
M
R
R
L
R
L
G
L
A
K
D
L
A
G
LWLAEA--------------------------------------------------------------------------------------------------------
17
Fugue
50.31
26%
-68
- C3 -
5A1F
14
KDM5B_HUMAN
A:
[1-458]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SM
F
L
P
P
P
E
C
P
V
F
E
P
S
WEEFAD
P
F
A
F
I
H
K
I
R
P
I
A
E
Q
T
G
I
C
K
V
R
P
PPDWQP
P
F
A
C
D
V
--------
D
-
K
--
L
H
F
---------------
T
P
R
---
I
------
Q
R
--
L
N
E
L
E
A
Q
T
R
-
V
R
--
D
---
Y
T
L
R
T
-
F
G
E
M
A
D
A
F
K
S
-
D
Y
F
N
M
P
-------------------
V
H
M
V
P
T
E
L
V
E
K
E
F
W
R
L
V
---
S
T
I
-
E
E
D
V
T
V
E
Y
G
A
D
I
A
S
K
E
FGSG
F
P
V
R
DS
P
E
E
E
E
Y
L
D
SGWNLNNMPVMEQSVLAHITADICGMK
L
P
W
L
Y
V
G
M
CFSSF
C
W
H
I
E
DHW
S
Y
S
I
N
Y
L
HW
G
E
P
K
T
W
Y
G
V
P
GYA
A
E
Q
L
E
N
V
M
K
K
L
APELFVSQPDLL
H
Q
L
V
T
I
M
N
P
N
T
L
M
T
H
EV
P
V
Y
R
T
N
Q
C
AG
E
F
V
I
T
F
P
R
A
Y
H
S
G
F
N
Q
G
F
N
F
A
E
A
V
N
F
C
T
VDW
L
P
L
G
R
Q
C
V
E
H
Y
R
L
L
HRYCVFS
H
D
E
M
I
C
K
M
A
S
K
ADVLD
V
V
V
A
S
T
V
Q
K
D
M
A
I
M
I
E
D
E
K
A
L
R
E
T
V
R
K
L
GVI
D
S
E
R
M
DFELLPDDERQCVKCKTTCFM
S
A
I
S
C
SCKPG
L
L
V
C
LHHVKELCSCPPYKYKLRYRYT
L
D
D
L
Y
P
M
M
N
A
L
K
L
R
A
E
15
HHSearch
48.93
13%
-162
- C3 -
1E5P
-
APHR_CRICR
A:
[86-138]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Y
I
T
S
--------
D
-
K
-
I
F
F
T
---------------
N
K
N
M
D
-
R
------
A
G
Q
E
T
N
M
I
V
V
A
G
K
-
G
N
--
A
LT-
P
---
E
-
E
N
E
I
L
V
Q
F
A
H
-
E
K
K
I
P
V
-------------------
E
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
HHSearch
47.10
15%
-152
- C3 -
4ES7
-
AMBP_HUMAN
A:
[133-185]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
N
Y
D-------
E
-
Y
-
A
I
F
L
---------------
T
K
K
---
F
S
RHH--
G
P
--
T
I
T
A
K
L
Y
G
R
-
A
P
QL
R
---
E
---
T
-
L
L
Q
D
F
R
V
V
A
Q
-
G
V
G
I
P
E
-------------------
D
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
19
Fugue
45.76
15%
17
* C4 *
4P5N
9
?
A:
[3-76]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
S
V
Q
D
K
QG
Q
N
I
N
VG
D
-
T
-
V
Y
T
P
---------------
Y
R
G
---
G
------
K
H
--
E
G
Q
V
A
D
I
V
T
-
T
K
--
E
---
E
---
A
-
A
E
K
G
V
K
N
P
P
K
-
V
L
F
T
D
Q
-------------------
N
N
K
D
----
V
A
H
--------------
N
P
G
T
L
T
D
L
D
K
Q
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
13
HHSearch
42.51
13%
-193
- C3 -
1QWD
-
BLC_ECOLI
A:
[120-168]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
L
D
R
--------
E
-
Y
-
R
H
A
L
---------------
V
-
C
---
G
------
P
D
--
R
D
Y
L
W
I
L
S
R
-
T
P
--
T
IS-
D
---
E
-
V
K
Q
E
M
L
A
V
A
T
-
R
E
G
F
D
V
-------------------
S
K
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
HHSearch
41.74
13%
-143
- C3 -
1KXO
-
BBP_PIEBR
A:
[104-160]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
D
N
--------
K
-
N
Y
I
I
G
Y
---------------
F
C
S
---
Y
D-----
K
K
G
H
M
D
L
V
W
V
L
S
R
-
S
M
VL
T
---
G
---
E
-
A
K
T
A
V
E
N
Y
L
I
G
S
P
V
V
D
S
-------------------
Q
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
23
Fugue
41.15
33%
-
- C3 -
2AG3
-
?
A:
[5-29]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
E
D
K
L
E
E
I
L
--
S
Y
H
I
E
N
-------------------
E
L
A
R
----
I
K
K
L
L
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
HHSearch
39.46
53%
-171
- C3 -
1CMB
1
METJ_ECOLI
A:
[52-66]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
N
--
S
---
E
---
L
-
L
---
C
E
A
F
L
H
-
A
F
T
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
HHSearch
38.47
39%
-158
- C1 -
4RFU
2
?
A:
[59-91]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
D
V
--------
D
-
R
-
A
V
Y
W
H
L
K
K
F
A
G
N
AGTPA
G
W
F
R
W
---
G
------
I
W
--
D
N
F
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
HHSearch
35.83
33%
-145
- C3 -
1QW2
-
?
A:
[75-92]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
M
G
V
K
-
T
L
--
D
---
D
---
M
-
L
S
A
K
V
V
E
A
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
12
HHSearch
34.34
15%
-
- C3 -
1RGX
-
RETN_MOUSE
A:
[6-25]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C
P
I
--
D
---
E
---
A
-
I
D
K
K
I
K
Q
D
F
N
-
S
L
F
P
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------