@TOME V2.3
(Nov 2016)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : bsu10009: (2016-06-15 )
MSVFLIVLSCITLAFASGAVYYIKLLSQAASYPPKRVIRQKALVCSTGTAFTLCLIFFTKLLA
Atome Classification :
(18 SA)
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------.....--.-----...----10...---.-....20........30..-......40-........-----------.50........60..-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
S
V
F
L
--
I
-----
V
L
S
----
C
I
T
L
A
---
F
-AS
G
A
V
Y
Y
I
K
L
L
S
Q
A
ASY
P
-
P
K
R
V
I
R
Q
--
K
A
L
VCSTG-----------
T
A
F
T
L
C
L
I
F
F
T
K
LLA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
17
Fugue
85.02
22%
-238
- C6 -
4TZ4
-
DDB1_HUMAN
A:
[1-1146]
S
Y
N
Y
V
V
T
AQKPTAVN
G
C
V
T
G
HFTSAE
D
L
N
L
L
I
A
KNT
R
L
E
I
Y
V
V
T
ALRPV
K
E
V
G
M
YGKIA
V
M
E
L
F
R
P
K
GES
K
D
L
L
F
I
L
T
AKY
N
A
C
I
L
E
Y
K
QS
I
D
I
I
T
R
A
H
G
N
VQDRIGRPSET
G
I
I
G
I
I
D
PECR
M
I
G
L
R
LYDG
L
F
K
V
I
P
LDRDNKEL
K
A
F
N
I
R
L
EELHVI
D
V
K
F
L
Y
GCQ
A
P
T
I
C
F
V
Y
Q
D
PQ
G
R
H
V
K
T
Y
E
V
S
LREKEFNKGPWKQNVEAEAS
M
V
I
A
V
P
EPF
G
G
A
I
I
I
G
QE
S
I
T
Y
H
N
GD
K
Y
L
A
I
A
P
PIIKQ
S
T
I
V
C
HNRVDPNGS
R
Y
L
L
G
D
ME
G
R
L
F
M
L
L
L
E
KTLK
D
L
R
V
E
L
LGETSIAE
C
L
T
Y
L
D
NG
V
V
F
V
G
S
RL
G
D
S
Q
L
V
K
L
NEQ
G
S
Y
V
V
A
M
E
T
F
T
N
LGPIV
D
M
C
V
V
DLEQ
G
Q
L
V
T
CSGAFKE
G
S
L
R
I
I
R
N
G
I
G
I
H
E
H
A
S
I
D
L
P
GIK
G
L
W
P
L
R
SDPETDD
T
L
V
L
S
F
VG
Q
T
R
V
L
M
L
N
GE
E
V
E
E
T
E
L
M
GFVDDQQTF
F
C
G
N
V
A
HQ
Q
L
I
Q
I
T
SA
S
V
R
L
V
S
Q
EPKALV
S
E
W
K
E
PQAKN
I
S
V
A
S
--
C
-----
N
S
S
----
Q
V
V
V
A
---
V
--
G
R
A
L
Y
Y
L
Q
I
H
P
Q
E
L
R
Q
I
-
S
H
T
E
M
E
V
--
A
C
L
D
I
T
P
L
-----------
G
L
S
P
L
C
A
I
G
L
T
D
I
S
A
R
I
L
K
L
PSFELHKEMLGGIIPR
S
I
L
M
T
T
F
ES
S
H
Y
L
L
C
A
L
GDG
A
L
F
Y
F
G
L
N
IETGLLSDK
K
V
T
L
G
TQ
P
T
V
L
R
T
F
R
SS
T
T
N
V
F
A
C
S
D
R
P
T
V
I
Y
SNH
K
L
V
F
S
N
V
NLKEVN
Y
M
C
P
L
N
S
DGYPD
S
L
A
L
A
N
NS
T
L
T
I
G
T
I
D
E
I
Q
K
L
H
I
R
T
V
P
LY
E
S
P
R
K
I
C
Y
Q
EVSQ
C
F
G
V
L
S
S
R
I
E
V
Q
DTTALRPSASTQAL
S
S
S
V
SSE
E
V
E
V
H
N
L
L
I
I
D
QHTFEVL
H
A
H
Q
F
L
QN
E
Y
A
L
S
L
V
S
C
K
L
GKDP
N
T
Y
F
I
V
G
T
A
M
V
Y
PEEAEPK
Q
G
R
I
V
V
F
Q
Y
S
DGKLQTV
A
E
K
E
V
KGAVY
S
M
V
E
F
NG
K
L
L
A
S
I
NS
T
V
R
L
Y
E
W
T
TEK
E
L
R
T
E
C
N
H
Y
N
NIMAL
Y
L
K
T
K
GD
F
I
L
V
G
D
LMR
S
V
L
L
L
A
Y
K
PMEG
N
F
E
E
I
A
R
D
F
N
P
N
WMS
A
V
E
I
LDDD
N
F
L
G
A
E
N
AF
N
L
F
V
C
Q
KDEERQHLQEV
G
L
F
HLGEFVN
V
F
C
H
G
S
LVT
Q
G
S
V
L
F
G
T
VNG
M
I
G
L
V
T
S
L
S
E
S
W
Y
N
L
L
L
D
M
Q
N
R
L
N
K
V
IKSVGKIE
H
S
F
W
R
SFHTKTEPATGFID
G
D
L
I
E
S
F
LDIS
R
P
K
M
Q
E
V
V
A
N
L
Q
Y
D
D
GKREAT
A
D
D
L
I
K
V
V
E
E
L
T
R
I
H
W
S
H
P
Q
FE
11
Fugue
83.09
23%
-277
* C6 *
4CKB
1
MCEL_VACCW
A:
[1-844]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MDANVVSSST
I
A
T
Y
I
D
A
L
A
K
N
A
S
E
L
EI
N
N
E
L
E
LVFIKPPLI
T
L
T
N
V
V
N
I
ST
I
Q
E
S
F
I
R
F
T
V
T
NKEGVKI
R
T
K
I
P
LSKVHGLDVK
N
V
Q
L
V
D
A
IDNI
V
W
E
K
K
S
L
V
T
E
N
R
LHKE
C
L
L
R
L
S
T
E
E
R
H
I
F
L
DYKKYGSS
I
R
L
E
L
V
N
L
I
Q
A
K
T
KN
F
T
I
D
F
K
L
K
Y
F
LGSGAQSKS
S
L
L
H
A
I
N
HPKSRPN
T
S
L
E
I
E
F
T
P
R
D
N
E
T
V
P
Y
D
E
L
I
K
E
L
T
T
L
S
R
H
I
F
MASPEN
V
I
L
S
P
PINAP
I
K
T
F
M
L
P
KQDIVGLDLEN
L
Y
A
V
T
KTDG
I
P
I
T
I
--
R
-----
V
T
S
---------------
N
G
L
Y
C
Y
F
T
H
L
G
Y
I
I
R
Y
P
-
V
K
R
I
I
D
S
--
E
V
V
V
F
G
E
A
-----------
V
K
D
K
N
W
T
V
Y
L
I
K
L
I
E
ND
R
L
E
E
S
K
Y
V
E
S
K
L
VDICDR
I
V
F
K
S
K
K
Y
E
G
P
FTT
T
S
E
V
V
D
M
L
S
T
Y
L
PKQPE
G
V
I
L
F
Y
SKGPKSN
I
D
F
K
I
K
K
E
N
T
I
D
Q
T
A
N
V
V
F
RMSSEPIIFGES
S
I
F
V
E
Y
K
K
F
S
NDKG
F
P
K
E
Y
G
S
G
K
I
V
L
YNG
V
N
Y
L
N
NIY
C
L
E
Y
I
NTHNEVGIK
S
V
V
V
P
I
K
F
I
A
E
F
L
VNGEILKPR
I
D
K
T
M
K
Y
I
N
S
EDYYGNQ
H
N
I
I
V
E
H
L
R
D
Q
S
IKIGDINDKFRLNPEVTRG
P
L
G
I
L
S
N
Y
V
K
T
L
L
I
S
M
Y
C
SKTFLDDSNK
R
K
V
L
A
I
DFGNGAD
L
E
K
Y
F
Y
G
EIA
L
L
V
A
T
D
PD
A
D
A
I
A
R
G
N
E
R
Y
N
K
L
N
SGIKTKY
Y
K
F
D
Y
I
Q
E
T
IRSDT
F
V
S
S
V
R
E
V
FY
F
G
K
F
N
I
I
D
W
Q
FAIHYSFHPRH
Y
A
T
V
M
N
N
L
S
E
L
TASG
G
K
V
L
I
T
T
M
D
G
D
K
L
S
K
LT
D
K
K
T
F
IIHKNLPSSEN
Y
M
S
V
E
K
IADD
R
I
V
V
Y
N
PSTMS
T
P
M
T
E
Y
I
I
K
K
N
D
I
V
R
V
F
N
E
Y
GFVLV
D
N
V
D
F
A
T
I
I
E
R
S
K
KFINGASTMEDR
P
S
T
R
N
F
F
E
L
N
R
G
A
I
K
CEGLD
V
E
D
L
L
S
Y
Y
V
V
Y
V
F
S
KR--------------------------------------
15
Fugue
62.00
18%
-245
- C6 -
3L9A
2
?
X:
[9-88]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
D
F
F
V
--
I
-----
T
N
S
----
E
Y
T
F
A
GVH
Y
-
A
K
G
A
V
L
H
V
S
P
T
Q
K
R
A
F
W
V
----
I
A
D
Q
--
E
N
F
I
K
Q
V
N
-----------
K
N
I
E
Y
V
E
K
N
A
S
P
A
F
L
QRIVEIYQVKFEGKNVH--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
14
Fugue
59.70
15%
-224
- C6 -
4OWT
-
SOSB1_HUMAN
B:
[5-109]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TFVK
D
I
L
I
F
--
I
-----
V
L
E
TGV
R
T
C
K
V
A
---
D
-
K
T
G
S
I
N
I
S
V
W
D
D
V
G
N
L
I
Q
-
P
G
D
I
I
R
L
--
L
T
L
Y
T
D
L
Q
-----------
K
I
G
E
F
C
M
V
Y
S
E
V
P
N
F
S------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
16
Fugue
55.39
17%
-140
* C3 *
2LU7
-
A:
[1-82]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
T
R
V
R
--
S
T
PG
G
D
L
E
L
----
V
V
H
L
S
---
G
-
P
G
G
P
V
R
W
Y
K
D
G
E
R
L
A
S
Q
G
-
R
V
Q
L
E
Q
A
GA
R
Q
V
L
R
V
Q
G
ARSGDA
G
E
Y
L
C
D
A
P
Q
D
S
R
I
F
L
V
S
V
E
E
P------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
HHSearch
47.69
44%
-115
- C7 -
4BWQ
-
PQBP1_HUMAN
B:
[17-35]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
F
Q
Q
R
P
Y
P
S
P
G
A
V
L
R
A
--
N
A
E
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
13
Fugue
38.60
25%
-171
- C7 -
1PD7
-
MAD1_HUMAN
B:
[1-24]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
R
M
N
I
Q
M
L
L
E
A
A
D
Y
L
-
E
R
R
E
R
E
A
--
E
H
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
HHSearch
37.94
25%
-171
* C5 *
2OQJ
-
?
C:
[2-17]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
C
P
-
P
S
H
V
L
D
M
--
R
S
G
T
C
L
A
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
HHSearch
37.39
36%
-
- C1 -
4IKA
-
?
D:
[6-19]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
-
P
K
Q
V
L
K
K
--
P
A
L
R
T
A
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
12
Fugue
34.00
21%
-20
- C7 -
1JO6
-
KCMB2_HUMAN
A:
[1-45]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
F
I
---
W
-
T
S
G
R
T
S
--
S
S
Y
R
H
D
E
K
R
N
-
I
Y
Q
K
I
R
D
--
H
D
L
L
D
K
R
K
-----------
T
V
--------
T
A
L
K
A
GED----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
HHSearch
32.07
11%
-128
- C5 -
4OSP
1
?
A:
[12-33]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
K
L
T
G
K
--
T
A
L
V
T
G
S
S
-----------
R
G
I
G
R
A
T
A
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
HHSearch
30.72
9%
-123
* C4 *
5FLM
-
RPB3_BOVIN
C:
[228-249]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
F
Y
Y
N
V
E
S
C
G
S
L
R
-
P
E
T
I
V
L
S
--
A
L
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
18
Fugue
30.43
9%
-101
- C3 -
1YUA
-
?
?:
[1-65]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
N
G
E
V
AP
P
-----
K
E
D
----
P
V
P
L
P
---
E
-
L
P
C
E
K
S
D
A
Y
F
V
L
R
D
G
A
A
G
-
V
F
L
A
A
N
T
--
F
P
K
S
R
E
T
R
-----------
A
P
L
V
E
E
L
Y
R
F
R
D
R
L
P
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
19
Fugue
29.03
19%
18
* C7 *
4C7N
1
A:
[2-48]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
S
V
D
Y
I
R
K
L
Q
R
E
Q
Q
R
A
-
K
E
L
E
N
R
Q
--
K
K
L
E
H
A
N
R
-----------
H
L
L
L
R
I
Q
E
L
E
M
Q
A
R
A
H------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
HHSearch
26.85
14%
-217
- C4 -
2WSC
-
PSAI_PEA
I:
[11-30]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
V
G
L
L
---
F
P
A
V
A
M
A
S
L
F
L
H
V
E
K
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10
HHSearch
22.12
21%
-160
- C7 -
2Y69
-
CX7A1_BOVIN
J:
[57-78]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
----
T
L
C
L
G
---
G
-
T
L
Y
S
L
Y
C
L
G
W
A
----
S
F
P
-
H
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
20
Fugue
16.25
4%
-48
- C2 -
1YA5
2
TELT_HUMAN
T:
[1-89]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
A
T
S
E
--
L
-----
S
S
E
----
V
S
E
E
N
---
S
-
E
R
R
E
A
F
W
A
E
W
K
D
L
T
L
S
T
R
-
P
E
E
G
S
S
L
--
H
E
E
D
T
Q
R
H
-----------
E
T
Y
H
Q
Q
G
Q
S
Q
V
L
V
Q
R
SPWLMMRMGILGRGLQEYQLPYQRVL-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
HHSearch
16.05
22%
0
- C- -
1V54
-
CX7A1_BOVIN
J:
[36-58]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
----
T
L
C
L
G
---
G
-
T
L
Y
S
L
Y
C
L
G
W
A
----
S
F
P
-
H
K
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------