@TOME V2.3
(Nov 2016)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : bsu10780: (2016-06-16 )
MKKKETAWMKRKQLLYTEERKWEYGTILIEDGICLIENGEGDILLADSLQHSPIWIHHKGKWEQAGFQDKLVLACGAENISLSGGERIRYEKSVKRPLMALLDSLDDETFLAFLQHLHSFGLSVFDCVFSYNKGVFSNTSAGQGVSFYHFSNDTAQCAMQHHYNYSSEGTGDRFEWTASNGKRSIMYTAVQRGRK
Atome Classification :
(20 SA)
-----------------------------------.....-----....-10.------....----...20.......--.30..-...-----------------------------------.----..40.----.......50--....--------...----.60.......--.-----70....-..-.--.-80........90.......---..100-----........110...----..-..120.----...----...130.-......140.........150----..-.....160.......----170..-.....180.......190...-----------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
-----------------------------------MKK
K
E
-----
T
A
W
M
-
K
R
K
------
Q
L
L
Y----TEERKWEY
G
T
I
L
--
I
ED
G
I
-
C
L
I
-----------------------------------E----NGEG
D
----
I
L
L
ADSLQH--S
P
I
W
--------
I
H
H----KGKWEQAGFQ--
D
-----
K
L
V
L
A
C-GA-E--N-ISLSGG
E
R
I
R
Y
-
E
K
S
VK
R
P
---
L
M
A
L
------
L
D
SLD
D
E
T
F
L
A
F
L
Q
----
H
L
-
H
S
F
G
L
S
----
V
F
D
----
C
V
F
S
YNK-GVFSNTS--AGQ
G
V
S
F
Y
H
FSN----
D
T
-
A
Q
C
A
M
Q
HHYNYSSEG----TGD
R
F
-
E
W
TASNGKR
S
I
M
Y
T
A
V
QRGRK-----------------------------------------------------------------------------------------------------------------
30
Fugue
73.95
20%
-96
- C4 -
4PCA
4
?
A:
[6-226]
--------H
H
H
M
R
N
VSLS
K
Q
D
E
Y
L
N
K
LFAVDT
E
G
A
L
K
A
H
K
-----
T
A
P
S
-
E
L
R
------
M
A
Q
L
----
G
T
V
E
G
Q
M
L
Q
L
L
I
--
R
M
A
G
I
H
S
I
V
-----------------------------------
E
V
G
TC
V
G
F
S
A
----
I
C
M
A
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A
L
P
S
--
K
G
H
I
--------
Y
T
I
----
E
K
D
Y
E
N
V
V
T
A
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N
-----
Q
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N
C
-
K
L
-
E
--
D
K
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H
G
E
A
L
A
Q
-
L
N
T
L
K
E
M
APF
D
M
I
F
------
I
D
A
-
N
K
S
S
Y
L
A
Y
L
N
W
A
K
M
Y
I
-
R
K
G
G
L
I
----
V
A
D
----
N
T
F
L
F
G
S
--
V
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--
T
E
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V
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S
N
A
H
A
S
M
----
R
A
-
F
N
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E
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N
K
E
K
Y
L
S
T
I
----
I
P
T
-------
S
E
G
----
M
M
V
S
I
K
L
T
-------------------------------------------------------------------------------------------------------------------
31
Fugue
62.26
18%
-28
- C4 -
1MRO
3
MCRG_METTM
C:
[1-247]
--------------------------------------
A
Q
YYPGT
T
K
V
A
-
Q
N
R
------
R
N
F
C
----
N
P
E
Y
E
L
E
K
L
R
E
I
--
S
D
E
D
V
-
V
K
I
L
GHRAPGEEYPSVHPPLEEMDEPED
A
I
R
E
M
V
EPI
D
G
----
A
K
A
G
D
R
V
R
Y
I
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T
D
S
M
Y
F
--
A
P
A
Q
--------
P
Y
V
----
R
S
R
A
Y
L
C
R
Y
R
---------------
G
A
-
D
--
A
-
G
T
L
S
G
R
Q
I
I
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E
R
D
L
E
K
I
---
S
K
E
L
------
L
E
T
E
F
F
D
P
A
R
S
G
V
R
GKSV
H
G
-
H
S
L
R
L
D
EDGM
M
F
D
MLRR
Q
I
Y
N
K
D
T
-
G
R
V
E
M
V
K
--
N
Q
I
G
D
E
L
D
E
P
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D
LGEP
L
D
-
E
E
T
L
M
E
K
T
T
I
Y
R
V
D
G
----
E
A
Y
R
D
-
D
V
E
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I
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R
I
H
V
L
R
S
Q
G
G
F
N
L----------------------------------------------------------------------------------------------------------------
32
Fugue
61.40
16%
-77
- C3 -
4GXB
2
SNX17_HUMAN
A:
[4-280]
VP
T
E
E
V
S
L
E
V
L
L
SNG
Q
K
V
L
V
N
V
L
TSDQ
T
E
D
V
L
E
A
V
A
A
K
L
D
-----
L
P
D
D
-
L
I
G
------
Y
F
S
L
----
F
L
V
R
E
K
E
D
G
A
F
S
--
F
V
R
K
---
L
Q
-----------------------------------
E
----
F
E
L
P
Y
----
V
S
V
T
S
L
R
S
Q
--
E
Y
K
I
--------
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R
----
K
S
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W
D
S
A
Y
D
D
--
D
V
M
EN
R
V
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L
N
L
L
-
Y
A
-
Q
--
T
-
V
S
D
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E
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I
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V
-
T
K
E
Q
H
R
Q
---
L
K
S
L
------
Q
E
K
V
S
K
K
E
F
L
R
L
A
Q
----
T
L
-
R
H
Y
G
Y
L
----
R
F
D
A
---
C
V
A
D
F
P
E
K
D
C
P
V
V
V
S
--
A
G
N
S
E
L
S
L
Q
L
R
E
----
G
S
-
F
R
V
T
R
M
R
C
W
R
V
T
S
S
V
----
P
L
P
S
G
-
G
R
G
E
V
R
L
E
L
A
F
E
Y
L
M
S
K
D
R
L
Q
W
V
T
I
T
S
PQ
A
I
M
M
S
I
C
L
Q
S
M
V
D
E
L
M
V
K
K
S-------------------------------------------------------------------------------------
29
Fugue
55.30
20%
-71
- C4 -
1AOC
1
COAG_TACTR
A:
[1-175]
-----------------------------------
A
D
T
N
A
-----
P
I
C
L
C
D
E
P
------
G
V
L
G
----
R
T
Q
I
V
T
T
E
I
K
D
K
--
I
E
K
A
V
-
E
A
V
-----------------------------------
A
----
Q
E
S
G
V
---------
S
G
R
G
--
F
S
I
F
--------
S
H
H
----------------------
P
V
F
R
E
C
-
G
K
-
Y
--
E
-
C
R
T
V
R
P
E
H
S
R
C
-
Y
N
--------------------------
F
P
P
F
T
H
----
F
K
-
S
E
C
P
V
S
----
T
R
D
----
C
-----
E
-
P
V
F
G
Y
T
V
--
A
G
E
F
R
V
I
V
Q
A
P
R
----
A
G
F
R
Q
C
V
W
Q
H
K
C
R
F
G
S
N
S
----
C
G
Y
N
G
-
R
C
T
---
Q
Q
R
S
V
V
R
L
V
T
Y
N
L
E
K
D
G
F
L
C
E
S
F
R
T
C
C
GCPCRSF----------------------------------------------------------------------------------------------
8
HHSearch
51.03
12%
-183
- C5 -
2OZJ
-
?
A:
[65-98]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
Q
--
G
-----
E
A
V
I
T
F
-
D
D
-
Q
--
K
-
I
D
L
V
P
E
D
V
L
M
V
-
P
A
H
K
I
H
A
---
I
A
G
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
33
Fugue
49.59
20%
-41
- C4 -
1DMU
6
T2B1_BACIU
A:
[1-299]
------------------------------MYNLH
R
E
K
I
F
-----
M
S
Y
N
-
Q
N
K
------
Q
Y
L
E
D
N
P
E
I
Q
E
K
I
E
L
Y
G
L
N
L
--
L
N
E
----
V
I
-----------------------------------
S
----
D
N
E
E
E
----
I
R
A
D
Y
N
E
A
N
FL
H
P
F
W
--------
M
N
Y
PPLD
R
G
K
M
P
K
-
G
D
Q
--
I
-----
P
W
-
I
E
V
-
G
E
-
K
--
A
-
V
G
S
K
L
T
R
L
V
S
Q
-
R
E
D
I
T
V
R
---
E
I
G
L
------
P
T
G
P
D
-
E
R
Y
L
L
T
S
P
----
T
I
-
Y
S
L
T
N
G
----
F
T
D
----
S
I
M
M
F
-----
V
D
I
K
S
--
V
G
P
R
D
S
D
Y
D
L
V
L
----
S
P
-
N
Q
V
--------
S
G
N
G
----
D
W
A
Q
L
-
E
G
G
I
Q
N
N
Q
Q
T
I
Q
------
G
P
R
S
S
Q
I
F
L
P
TIPP
L
Y
I
L
SDG
T
I
A
P
V
V
H
L
F
I
K
P
I
Y
A
MRSLTKG
D
T
G
Q
S
LY
K
I
K
L
A
S
V
P
N
GLGLFCNPGYAFDSAYKFLFRPGKDDRTKSLLQ
K
R
V
R
V
D
L
R
V
L
D
K
I
GPR
V
M
T
I
D
MDK
27
Fugue
45.82
23%
-19
- C2 -
4MT5
-
?
A:
[0-183]
--------------------------------------
M
Q
-----
T
A
Y
V
-
K
Y
V
DDTTGE
T
L
R
Q
----
D
D
L
H
G
Y
T
D
E
T
I
P
YS
T
A
E
G
I
-
K
K
Y
-----------------------------------
E
-----
G
D
G
Y
----
V
L
V
S
D
G
F
K
P
--
G
T
K
F
G
VGT
P
T
Y
E
V
H
F
----
K
H
G
M
T
H
T
D
A
T
--
D
-----
K
------
N
A
-
E
--
Q
-
K
T
V
T
--
E
T
I
H
Y
-
V
D
E
N
N
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T
---
V
--
Q
------
P
D
S
T
T
A
V
T
F
K
R
G
Y
T
----
T
D
-
N
V
T
G
K
-------------
V
V
S
Y
D
P
-
W
T
V
D
G
N
Q
--
A
D
S
----
K
T
F
A
A
----
V
P
-
S
P
A
V
E
G
Y
T
P
N
H
Q
Q
I
N
----------
E
F
T
V
T
P
D
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K
D
I
V
K
T
V
V
Y
V
G
D
P
-----------------------------------------------------------------------------------------------------------------
17
HHSearch
45.21
32%
-142
- C5 -
3D82
2
?
A:
[57-90]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
E
--
G
-----
T
L
Q
I
A
F
-
R
D
-
Q
--
N
-
I
T
L
Q
A
G
E
M
Y
V
I
-
P
K
G
V
E
H
K
---
P
M
A
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
22
HHSearch
43.88
15%
-154
- C5 -
1YHF
-
?
A:
[64-97]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
S
--
G
-----
L
A
E
I
T
I
-
D
Q
-
E
--
T
-
Y
R
V
A
E
G
Q
T
I
V
M
-
P
A
G
I
P
H
A
---
L
Y
A
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
18
HHSearch
42.22
11%
-99
- C5 -
2GU9
-
?
A:
[50-85]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
V
D
--
G
-----
A
G
E
A
I
V
-
D
G
-
H
--
T
-
Q
A
L
Q
A
G
S
L
I
A
I
-
E
R
G
Q
A
H
E
---
I
R
N
T
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
23
HHSearch
39.50
6%
-105
- C5 -
3BCW
2
?
A:
[74-109]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
I
E
--
G
-----
E
A
R
L
V
D
P
D
G
-
T
--
V
-
H
A
V
K
A
G
D
A
F
I
M
-
P
E
G
Y
T
G
R
---
W
E
V
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
25
HHSearch
38.20
6%
-119
- C5 -
4RD7
2
?
A:
[61-95]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
M
T
--
G
-----
R
A
E
L
V
S
-
D
G
-
A
--
R
-
R
P
F
H
A
G
D
V
V
Y
L
-
P
P
G
S
R
H
Q
---
V
V
N
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
16
HHSearch
37.42
11%
-86
- C5 -
3ES4
1
?
A:
[67-102]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
V
E
--
G
-----
E
A
L
Y
S
Q
-
A
D
A
D
--
P
-
V
K
I
G
P
G
S
I
V
S
I
-
A
K
G
V
P
S
R
---
L
E
I
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
21
HHSearch
37.35
6%
-107
- C5 -
2OPK
2
?
A:
[59-95]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
V
S
--
G
-----
S
A
G
I
E
C
-
E
G
-
D
TA
P
-
R
V
M
R
P
G
D
W
L
H
V
-
P
A
H
C
R
H
R
---
V
A
W
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
HHSearch
37.21
11%
-111
- C5 -
1Y3T
1
QDOI_BACSU
A:
[245-334]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
C
L
E
--
G
-----
Q
M
T
M
W
T
-
D
G
-
Q
--
E
-
I
Q
L
N
P
G
D
F
L
H
V
-
P
A
N
T
V
H
S
---
Y
R
L
D
S
H
Y
T
K
M
V
G
V
L
V
P
G
L
F
E
P
F
F
R
----
T
L
G
D
P
Y
E
G
H
----
I
F
P
----
C
-
K
P
Q
A
L
-
R
F
D
R
I
L
Q
N
I
E
A
L
D
L
K
V
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------
24
HHSearch
36.71
10%
-102
* C5 *
2O8Q
2
?
A:
[64-106]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
F
Q
L
F
Y
V
L
R
G
-----
W
V
E
F
E
Y
-
E
D
-
I
G
-
A
-
V
M
L
E
A
G
G
S
A
F
Q
-
P
P
G
V
R
H
R
---
E
L
R
H
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
20
HHSearch
36.49
9%
-96
- C- -
3FJS
-
?
A:
[62-95]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
E
--
G
-----
E
V
E
I
G
V
-
D
G
-
A
--
Q
-
R
R
L
H
Q
G
D
L
L
Y
L
-
G
A
G
A
A
H
D
---
V
N
A
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
PsiBlast_PDB
36.21
29%
-86
- C6 -
1W3H
-
XYNA_CELJU
A:
[11-86]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
--
P
G
L
A
----
S
L
-
A
D
F
P
I
G
----
V
A
V
----
A
A
S
G
G
N
A
-
D
I
F
T
-
S
S
--
A
R
Q
N
I
V
R
A
E
F
N
Q
----
I
T
-
A
E
N
I
M
K
M
S
Y
M
Y
S
G
S
N
FSF
T
N
S
D
R
L
V
S
W
A
A
Q
N
G
Q
------------------------------------------------------------------------------------------------------------------------------
14
HHSearch
35.65
9%
-112
- C5 -
3EO6
-
?
A:
[61-96]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
S
--
G
-----
M
A
Y
Y
H
A
-
E
G
-
A
N
D
V
-
Q
E
L
H
A
G
D
S
M
V
I
-
P
A
N
Q
S
Y
R
---
L
E
V
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
PsiBlast_PDB
35.52
27%
-59
- C5 -
5F6H
-
?
L:
[24-81]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
T
S
S
D
I
G
--
A
Y
T
G
V
S
W
Y
Q
Q
H
S
----
G
T
-
A
P
R
L
L
I
Y
D
V
S
K
R
P
S
G
----
V
S
D
R
F
-
S
G
S
K
S
G
N
T
A
S
L
T
I
S
G
L
Q
---------------------------------------------------------------------------------------------------------------------