@TOME V2.3
(Nov 2016)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : bsu10950: (2016-06-17 )
MNDFSLELPVRTNKPRETGQSILIDNGYPLQFFKDAIAGASDYIDFVKFGWGTSLLTKDLEEKISTLKEHDITFFFGGTLFEKYVSQKKVNEFHRYCTYFGCEYIEISNGTLPMTNKEKAAYIADFSDEFLVLSEVGSKDAELASRQSSEEWLEYIVEDMEAGAEKVITEARESGTGGICSSSGDVRFQIVDDIISSDIDINRLIFEAPNKTLQQGFIQKIGPNVNLANIPFHDAIALETLRLGLRSDTFFL
Atome Classification :
(20 SA)
.........10........20........30........40........50...-..--...60.........70.........80----....--....-.90..-..----....100.......110-.----------..-------....---------..120......-----.---130..-..--------...140.......150.......160----.........170-----------------.-------------------....-..-..180-...----.....190.......200.......210.......220.......230-.......240.......250-
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
MNDF
S
L
E
LPVRTNKPRETGQ
S
I
L
IDNGY
P
L
Q
F
F
K
D
A
IAG
A
S
D
Y
I
D
F
V
K
FGW
G
T
S
-
L
L
--
T
K
D
L
-
E
E
K
I
S
T
L
K
EH-
D
I
T
F
F
F
G
G
T
L
-----
F
E
K
Y
--
V
S
Q
K
-
K
V
N
E
F
-
H
R
----
Y
C
T
Y
FG
C
E
Y
I
E
ISNG---T----------LP-------MTNK---------EK
A
A
Y
I
ADFSD-----
E
---
F
L
V
L
S
-EV--------GSK
D
A
E
L
A
SRQ
S
S
E
E
W
L
E
Y
I
V
E
D
M
------EA
G
A
E
K
V
I
T
E
-------------------
A
-------------------RESG-TG-
G
I
CS--SSG----
D
V
R
F
Q
I
V
D
D
I
I
SSDIDI
N
R
L
I
FEAP
N
K
T
L
Q
Q
G
F
I
Q
KIGPNVNLANIPF-
H
D
A
I
A
L
E
T
L
R
L
GLRSDTFFL-
15
HHSearch
84.82
100%
-76
- C3 -
1U83
5
PSLS_BACSU
A:
[25-273]
--
D
F
S
L
E
L
P
V
R
T
N
K
P
R
E
T
G
Q
S
I
L
I
D
N
G
Y
P
L
Q
F
F
K
D
A
I
A
G
A
S
D
Y
I
D
F
V
K
F
G
W
G
T
S
-
L
L
--
T
K
D
L
-
E
E
K
I
S
T
L
K
E
H
-
D
I
T
F
F
F
G
G
T
L
-----
F
E
K
Y
--
V
S
Q
K
-
K
V
N
E
F
-
H
R
----
Y
C
T
Y
F
G
C
E
Y
I
E
I
S
N
G
---
T
----------
L
P
-------
M
T
N
K
---------
E
K
A
A
Y
I
A
D
F
S
D
-----
E
---
F
L
V
L
S
-
E
V
--------
G
S
K
D
------
Q
S
S
E
E
W
L
E
Y
I
V
E
D
M
------
E
A
G
A
E
K
V
I
T
E
----------------------------------------------------------------
Q
I
V
D
D
I
I
S
S
D
I
D
I
N
R
L
I
F
E
A
P
N
K
T
L
Q
Q
G
F
I
Q
K
I
G
P
N
V
N
L
A
N
I
P
F
-
H
D
A
I
A
L
E
T
L
R
L
G
L
R
S
D
T
F
F
--
1
PsiBlast_PDB
84.47
99%
-76
- C3 -
1U83
5
PSLS_BACSU
A:
[25-273]
--
D
F
S
L
E
L
P
V
R
T
N
K
P
R
E
T
G
Q
S
I
L
I
D
N
G
Y
P
L
Q
F
F
K
D
A
I
A
G
A
S
D
Y
I
D
F
V
K
F
G
W
G
T
S
-
L
L
--
T
K
D
L
-
E
E
K
I
S
T
L
K
E
H
-
D
I
T
F
F
F
G
G
T
L
-----
F
E
K
Y
--
V
S
Q
K
-
K
V
N
E
F
-
H
R
----
Y
C
T
Y
F
G
C
E
Y
I
E
I
S
N
G
---
T
----------
L
P
-------
M
T
N
K
---------
E
K
A
A
Y
I
A
D
F
S
D
-----
E
---
F
L
V
L
S
-
E
V
--------
G
S
K
D
------
Q
S
S
E
E
W
L
E
Y
I
V
E
D
M
------
E
A
G
A
E
K
V
I
T
E
----------------------------------------------------------------
Q
I
V
D
D
I
I
S
S
D
I
D
I
N
R
L
I
F
E
A
P
N
K
T
L
Q
Q
G
F
I
Q
K
I
G
P
N
V
N
L
A
N
I
P
F
-
H
D
A
I
A
L
E
T
L
R
L
G
L
R
S
D
T
F
F
--
36
Fugue
71.28
41%
-81
- C3 -
1QWG
3
PSLS_METJA
A:
[1-251]
M
K
A
F
E
F
L
-----
Y
E
D
F
Q
R
G
L
T
V
V
L
D
K
G
L
P
P
K
F
V
E
D
Y
L
K
V
C
G
D
Y
I
D
F
V
K
F
G
W
G
T
S
-
A
V
ID
R
D
V
V
-
K
E
K
I
N
Y
Y
K
D
W
-
G
I
K
V
Y
P
G
G
T
L
-----
F
E
Y
A
--
Y
S
K
G
-
K
F
D
E
F
-
L
N
----
E
C
E
K
L
G
F
E
A
V
E
I
S
D
G
---
S
----------
S
D
-------
I
S
L
E
---------
E
R
N
N
A
I
K
R
A
K
D
-----
N
G--
F
M
V
L
T
-
E
V
--------
G
K
K
M
P
D
K
D
K
Q
L
T
I
D
D
R
I
K
L
I
N
F
D
L
------
D
A
G
A
D
Y
V
I
I
E
-------------------
G
-------------------
R
E
S
G
-
K
G
K
G
L
F
D
--
K
E
G
----
K
V
K
E
N
E
L
D
V
L
A
K
-
N
V
D
I
N
K
V
I
F
E
A
P
Q
K
S
Q
Q
V
A
F
I
L
K
F
G
S
S
V
N
L
A
N
I
A
F
-
D
E
V
I
S
L
E
T
L
R
R
G
L
R
G
D
T
F
G
K
V
16
HHSearch
69.12
42%
-78
- C3 -
1QWG
3
PSLS_METJA
A:
[1-249]
M
K
A
F
E
F
L
Y
E
-----
D
F
Q
R
G
L
T
V
V
L
D
K
G
L
P
P
K
F
V
E
D
Y
L
K
V
C
G
D
Y
I
D
F
V
K
F
G
W
G
T
S
-
A
V
ID
R
D
V
V
-
K
E
K
I
N
Y
Y
K
D
W
-
G
I
K
V
Y
P
G
G
T
L
-----
F
E
Y
A
--
Y
S
K
G
-
K
F
D
E
F
-
L
N
----
E
C
E
K
L
G
F
E
A
V
E
I
S
D
G
---
S
----------
S
D
-------
I
S
L
E
---------
E
R
N
N
A
I
K
R
A
K
D
N
----
G
---
F
M
V
L
T
-
E
V
--------
G
K
K
M
P
D
K
D
K
Q
L
T
I
D
D
R
I
K
L
I
N
F
D
L
------
D
A
G
A
D
Y
V
I
I
E
-------------------
G
-------------------
R
E
S
G
K
G
K
-
G
L
F
D
--
K
E
G
----
K
V
K
E
N
E
L
D
V
L
A
K
N
V
-
D
I
N
K
V
I
F
E
A
P
Q
K
S
Q
Q
V
A
F
I
L
K
F
G
S
S
V
N
L
A
N
I
A
F
-
D
E
V
I
S
L
E
T
L
R
R
G
L
R
G
D
T
F
G
--
2
PsiBlast_PDB
68.32
42%
-78
- C3 -
1QWG
3
PSLS_METJA
A:
[12-248]
----------------
Q
R
G
L
T
V
V
L
D
K
G
L
P
P
K
F
V
E
D
Y
L
K
V
C
G
D
Y
I
D
F
V
K
F
G
W
G
T
S
A
V
I
--
D
R
D
V
V
K
E
K
I
N
Y
Y
K
D
W
-
G
I
K
V
Y
P
G
G
T
L
-----
F
E
Y
A
--
Y
S
K
G
-
K
F
D
E
F
-
L
N
----
E
C
E
K
L
G
F
E
A
V
E
I
S
D
G
---
S
----------
S
D
-------
I
S
L
E
---------
E
R
N
N
A
I
K
R
A
K
D
-----
N
G--
F
M
V
L
T
-
E
V
--------
G
K
K
M
P
D
K
D
K
Q
L
T
I
D
D
R
I
K
L
I
N
F
D
L
------
D
A
G
A
D
Y
V
I
I
E
-------------------
G
-------------------
R
E
S
G
-
K
G
K
G
L
F
D
--
K
E
G
----
K
V
K
E
N
E
L
D
-
V
L
A
K
N
V
D
I
N
K
V
I
F
E
A
P
Q
K
S
Q
Q
V
A
F
I
L
K
F
G
S
S
V
N
L
A
N
I
A
F
-
D
E
V
I
S
L
E
T
L
R
R
G
L
R
G
D
T
F
---
19
HHSearch
44.82
16%
-111
- C3 -
2EHH
1
DAPA_AQUAE
A:
[18-201]
------------------------------------------------------------------------------------------------
V
D
Y
E
-
A
L
G
N
L
-
I
E
----
F
H
V
D
N
G
T
D
A
I
L
V
C
G
T
---
T
GES-------
P
T
-------
L
T
F
E
---------
E
H
E
K
V
I
E
F
A
V
K
R
----
A
AGR
I
K
V
I
A
-
G
T
--------
G
--------
G
N
A
T
H
E
A
V
H
L
T
A
H
A
K
------
E
V
G
A
D
G
A
L
V
V
VPYYNKPT
Q
R
G
L
Y
E
H
F
K
T
V
A
-------------------
Q
E
V
D
I
P
I
-
I
I
Y
N
--
I
P
S
RTC
V
E
I
S
V
D
T
M
F
K
L
A
S
E
C
E
N
I
V
A
S
K
E
S
T
P
N
M
D
R
I
S
E
I
V
K
R
L
G
E
S
F
S
V
--
L
S
G
-
D
D
S
L
T
L
P
M
M
A
L
G
A
K
G
------
17
HHSearch
41.75
11%
-128
- C3 -
3JR2
7
?
A:
[20-139]
-------------------------------
D
A
V
A
V
A
S
N
V
A
S
Y
V
D
V
I
E
V
G
T
I
L
A
-
F
A
E
G
M
K
A
V
-
S
T
L
R
H
N
H
--
P
-
N
H
I
L
V
C
D
M
K
T
-----
T
--------
D
-
G
G
A
I
L
-
S
R
----
M
A
F
E
A
G
A
D
W
I
T
V
S
A
A
---
A
----------
H
I
----------
A
---------
T
I
A
A
C
K
K
V
A
D
E
L
----
N
---
G
E
I
Q
I
-
E
I
--------
Y
G
N
W
-------
T
M
----
Q
D
A
K
A
W
V
------
D
L
G
I
T
Q
A
I
Y
H
----------------------------------------------------------------------------------------------------------------------------------
28
HHSearch
40.17
14%
-93
- C3 -
3FLU
10
DAPA_NEIMB
A:
[28-206]
---------------------------------------------------------------------------------------------------
E
-
Q
L
R
D
L
-
I
D
----
W
H
I
E
N
G
T
D
G
I
V
A
V
G
T
---
T
GES-------
A
T
-------
L
S
V
E
---------
E
H
T
A
V
I
E
A
V
V
K
H
V
AK-
R
---
V
P
V
I
A
-
G
T
--------
G
--------
A
N
N
T
V
E
A
I
A
L
S
Q
A
A
E
------
K
A
G
A
D
Y
T
L
S
V
-------------------
V
PYYNKPS
Q
E
G
I
Y
Q
H
F
K
T
I
A
E
A
T
S
I
P
M
-
I
I
Y
N
--
V
P
G
RTVV
S
M
T
N
D
T
I
L
R
L
A
E
-
I
P
N
I
V
G
V
K
E
A
S
G
N
I
G
S
N
I
E
L
I
N
R
A
P
E
G
F
V
V
--
L
S
G
-
D
D
H
T
A
L
P
F
M
L
C
G
G
H
-------
23
HHSearch
39.92
11%
-156
- C3 -
3EWW
3
UMPS_HUMAN
A:
[31-149]
----------------
E
T
N
L
C
L
S
A
D
V
S
L
-
A
R
E
L
L
Q
L
A
D
A
L
G
P
S
I
C
M
L
K
T
H
V
D
I
L
-
N
D
FT
L
D
V
M
-
K
E
L
I
T
L
A
K
C
H
-
E
F
L
I
F
E
N
R
K
F
-----
A
D
I
G
-----
N
-
T
V
K
K
Q
-
Y
E
GGIF
K
I
A
S
-
W
A
D
L
V
N
A
H
V
V
---
P
----------
G
----------
S
G
---------
V
V
K
G
L
Q
E
V
G
L
P
L
----
H
---
R
G
C
L
L
-
I
A
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
21
HHSearch
39.63
18%
-156
- C3 -
3CQJ
-
ULAE_ECO57
A:
[21-129]
------------------------------------------------------------------------------------
I
-----
Y
E
K
A
--
L
P
A
G
E
C
W
L
E
R
-
L
Q
----
L
A
K
T
L
G
F
D
F
V
E
M
S
V
D
---
E
----------
T
D
E
R
L
S
R
LD
W
S
R
E
---------
Q
R
L
A
L
V
N
A
I
V
E
T
----
G
---
V
R
V
P
S
M
C
L
S
A
H
R
R
F
PL
G
S
E
D
D
A
-
V
R
A
Q
G
L
E
I
M
R
K
A
I
Q
F
A
Q
------
D
V
G
I
R
V
I
Q
L
A
-------------------
G
--------------------------------------------------------------------------------------------------------------
38
Fugue
39.35
17%
-98
- C3 -
3VE9
2
?
A:
[1-204]
M
N
R
V
I
L
S
L
D
S
P
I
P
---------------------------------------------------
E
E
T
L
R
K
L
N
G
K
-
V
A
G
I
K
V
G
W
P
L
-----
L
L
N
L
---
G
K
E
-
K
V
K
E
L
-
V
G
----
L
V
D
--
G
I
K
I
L
D
L
K
L
A
---
D
----------
I
D
-------
N
T
M
I
---------
L
I
V
D
E
L
K
D
I
T
N
-----
S
---
F
I
A
H
A
-
F
V
--------
G
V
---
E
G
S
L
A
S
L
S
Q
R
V
D
L
F
L
V
L
S
M
SHPGWN
D
A
F
Y
P
Y
L
R
E
V
-------------------
A
-------------------
R
R
V
N
-
P
K
-
G
F
V
A
--
P
A
------
T
R
P
S
M
I
S
R
V
K
G
D
F
P
D
K
L
V
I
S
P
G
V
G
T
Q
G
A
K
P
G
I
A
L
C
H
G
A
D
Y
E
I
V
G
R
S
V
Y
Q
S
A
D
P
V
R
K
L
E
E
I
V
R
S
Q
E
E
V
L
-
26
HHSearch
38.76
11%
-107
- C3 -
3EB2
1
?
A:
[22-204]
------------------------------------------------------------------------------------------------
V
R
A
D
-
V
M
G
R
L
-
C
D
----
D
L
I
Q
A
G
V
H
G
L
T
P
L
G
S
TGE
F
----------
A
Y
-------
L
G
T
A
---------
Q
R
E
A
V
V
R
A
T
I
E
A
A
QR-
R
---
V
P
V
V
A
-
G
V
--------
A
--------
S
T
S
V
A
D
A
V
A
Q
A
K
L
Y
E
------
K
L
G
A
D
G
I
L
A
I
-------------------
L
E
A
Y
F
PLK
D
A
Q
I
E
S
Y
F
R
A
I
A
D
A
V
E
I
P
V
-
V
I
Y
T
--
N
P
Q
FQR
S
D
L
T
L
D
V
I
A
R
L
A
E
-
H
P
R
I
R
Y
I
K
D
A
S
T
N
T
G
R
L
L
S
I
I
N
R
C
G
D
A
L
Q
V
--
F
S
A
-
S
A
H
I
P
A
A
V
M
L
I
G
G
V
G
------
33
HHSearch
38.23
23%
-149
- C3 -
2Z6I
2
?
A:
[77-145]
------------------------------------------------------------------------------------------------------
V
E
D
I
-
V
D
----
L
V
I
E
E
G
V
K
V
V
T
T
G
A
G
---
N
----------
P
-----------
S
------------
K
Y
M
E
R
F
H
E
A
----
G
---
I
I
V
I
P
-
V
V
--------
P
S
--------------
V
A
L
A
K
R
M
E
------
K
I
G
A
D
A
V
I
A
E
-------------------
G
-------------------
M
E
A
G
---------------------------------------------------------------------------------------
18
HHSearch
37.53
12%
-110
- C3 -
3F4W
1
?
A:
[11-138]
----------------------------
T
L
P
E
A
M
V
F
M
D
K
V
V
D
D
V
D
I
I
E
V
G
T
P
F
L
-
I
R
EG
V
N
A
I
-
K
A
I
K
---
E
K
Y
P
H
K
E
V
L
A
D
A
K
I
-----
M
D
----------
G
G
H
F
E
S
Q
----
L
L
F
D
A
G
A
D
Y
V
T
V
L
G
V
---
T
----------
D
V
-------
L
------------
T
I
Q
S
C
I
R
A
A
K
E
A
----
G
---
K
Q
V
V
V
-
D
M
--------
I
C
V
D
-------
D
L
P
---
A
R
V
R
L
L
E
------
E
A
G
A
D
M
L
A
V
H
-------------------
T
-------------------
G
T
D
----------------------------------------------------------------------------------------
29
HHSearch
35.99
12%
-143
- C3 -
3GK0
1
PDXJ_BURP1
A:
[141-225]
-----------------------------------------------------------
F
D
A
V
-
R
A
A
C
K
Q
L
A
D
A
-
G
V
R
V
S
L
F
--------
I
D
P
D
--
E
-------
A
Q
-
I
R
----
A
A
H
E
T
G
A
P
V
I
E
L
H
T
G
---
R
----------
Y
A
-------
D
A
H
D
A
A
E
Q
Q
R
E
F
E
R
I
A
T
G
V
D
A
G
I
A
L
----
G
---
L
K
V
N
A
-
G
H
--------
G
L
H
Y
----------------------------------------------------------------------------------------------------------------------------------------------------------------------
27
HHSearch
35.78
14%
-96
- C3 -
2CW6
1
HMGCL_HUMAN
A:
[121-260]
------------------------------------------------------------
Q
R
F
-
D
A
I
L
K
A
A
Q
S
A
-
N
I
S
V
R
--
G
Y
V
S
CALG
C
P
Y
E
GK
I
S
P
A
-
K
V
A
E
V
-
T
K
----
K
F
Y
S
M
G
C
Y
E
I
S
L
G
D
T
---
I
----------
G
V
-------
G
T
P
G
---------
I
M
K
D
M
L
S
A
V
M
Q
-----
E
---
V
P
-
L
A
-
A
L
--------
A
V
H
C
H
-----
D
T
Y
G
Q
A
L
A
N
T
L
M
A
L
------
Q
M
G
V
S
V
V
D
S
S
-------------------
V
-------------------
A
G
L
--
G
G
-
C
P
Y
A
QG
A
S
G
----
N
L
A
T
E
D
L
V
Y
M
L
E
G
---------------------------------------------------------
13
PsiBlast_PDB
35.40
47%
-87
- C3 -
4HC5
1
?
A:
[82-104]
---------------------------------------------------
G
I
S
-
L
I
--
T
R
D
I
-
D
E
A
Y
K
T
L
T
E
R
-
G
V
T
F
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
20
HHSearch
35.29
13%
-103
- C3 -
4I7W
2
DAPA_AGRFC
A:
[34-167]
-------------------------------------------------------------------------------------------------
D
E
Q
-
A
F
A
A
H
-
V
E
----
W
Q
I
A
E
G
S
N
G
L
V
P
-
V
G
---
T
TGES------
P
T
-------
L
S
H
D
---------
E
H
K
R
V
V
E
L
C
I
E
V
A
AK-
R
---
V
P
V
I
A
-
G
A
--------
G
S
--------
N
N
T
D
E
A
I
E
L
A
L
H
A
Q
------
D
A
G
A
D
A
L
L
V
V
-------------------
T
PYYNKPT
Q
K
G
L
F
A
H
F
S
A
V
A
E
A
V
K
L
P
I
-
V
I
Y
N
--
I
P
P
RSV
V
D
M
S
P
E
T
M
G
A
L
V
K
A
H
--------------------------------------------------------
30
HHSearch
35.01
12%
-118
* C3 *
3B8I
3
OADC_PSEAE
A:
[98-203]
-----------------------------------------------------------------------------------------------------
N
V
M
R
T
-
V
V
----
E
L
E
R
A
G
I
A
A
L
T
I
E
D
T
---
L
LPAQFGRKST
D
L
-------
I
C
V
E
---------
E
G
V
G
K
I
R
A
A
L
E
A
RVDP
A
---
L
T
I
I
A
-
R
T
--------
N
A
E
------
L
I
D
V
D
A
V
I
Q
R
T
L
A
Y
Q
------
E
A
G
A
D
G
I
C
L
V
-------------------
G
-------------------
V
R
---------------------
D
F
A
H
L
E
A
I
A
E
H
L
--------------------------------------------------------
11
PsiBlast_PDB
34.79
29%
-110
- C3 -
1QC7
-
FLIG_THEMA
A:
[251-328]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
V
L
R
-
E
V
--------
D
T
R
D
L
A
L
A
L
K
G
A
S
D
E
L
K
E
K
I
F
K
N
M
------
S
K
R
A
A
A
L
L
K
D
-------------------
E
-------------------
L
E
------------
Y
M
G
----
P
V
R
L
K
D
V
E
E
A
Q
Q
K
I
I
N
I
I
R
R
L
E
E
A
G
E
I
V
I
A
R
G
--------------------------------------