@TOME V2.3
(Nov 2016)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : bsu12150: (2016-06-19 )
MKKTMSAITAAAAVTSCFTGFGAASFSAPAKAAAQTNTLSENTNQSAAELVKNLYNTAYKGEMPQQAQGLTINKSTKGDVHAAFGEPERPVGGDNRFDLYHWNMGQPGYGFSYHKDMTISEIRYFGTGVERQLNLGGVTPEVLQKQLGPVNRVLTVPFTDEIDYVYDTGRYELHFVIGTDQTADHVNLKAK
Atome Classification :
(20 SA)
-.........----10........20........30..-......40........50........60.-.......------------70.........80.....--...90------....---..---.--.----.100....-------.---.-----...110...-.-.---...---120-----......------...---------------------------------------------------------130--------.---------....---.-------..140.---.....-.-150-....-------------..--.160.........-------170---...---......180.......190------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
-MK
K
T
M
S
A
I
T
----
A
A
A
A
V
T
S
C
F
T
GFGAASFSAPAKAA-AQTNTLSENTN
Q
S
A
A
E
L
V
K
N
L
Y
NTAYKGE-MPQQAQ
G
------------
L
-
T
INKSTKG
D
V
H
AAFGE--PERP-------VGGD---N
R
---
F
--
D
----
L
Y
--HWNM-------G---Q-----PGYG-FSYH-K-D---M
T
I
---
S
-------
E
I
R
Y
FG------TGV---------------------------------------------------------
E
R
---------
Q
---------LNLG---G-------V
T
P
E
V
L
---
Q
K
QLG-P-VN
R
-
V
L
TV-------------PF--TD--EI
D
Y
V
Y
DTG-------
R
-----
Y
E
L
---
H
F
V
IGTDQTADHVNLKAK-------------------------
4
HHSearch
87.87
100%
-80
- C3 -
4YGT
5
YJGB_BACSU
A:
[13-160]
-------------------------------------------------
N
Q
S
A
A
E
L
V
K
N
L
Y
N
T
A
Y
K
G
E
-
M
P
Q
Q
A
Q
G
------------
L
-
T
I
N
K
S
T
K
G
D
V
H
A
A
F
G
E
--
P
E
R
P
-------
V
G
G
D
---
N
R
---
F
--
D
----
L
Y
--
H
W
N
M
-------
G
---
Q
-----
P
G
Y
G
-
F
S
Y
H
-
K
-
D
---
M
T
I
---
S
-------
E
I
R
Y
F
G
------
T
G
V
---------------------------------------------------------
E
R
---------
Q
---------
L
N
L
G
---
G
-------
V
T
P
E
V
L
---
Q
K
Q
L
G
-
P
-
V
N
R
-
V
L
T
V
-------------
P
F
--
T
D
--
E
I
D
Y
V
Y
D
T
G
-------
R
-----
Y
E
L
---
H
F
V
I
G
T
D
Q
T
A
D
H
V
N
L
K
A
K
-------------------------
1
PsiBlast_PDB
87.25
97%
-80
- C3 -
4YGT
5
YJGB_BACSU
A:
[13-160]
-------------------------------------------------
N
Q
S
A
A
E
L
V
K
N
L
Y
N
T
A
Y
K
G
E
-
M
P
Q
Q
A
Q
G
------------
L
-
T
I
N
K
S
T
K
G
D
V
H
A
A
F
G
E
--
P
E
R
P
-------
V
G
G
D
---
N
R
---
F
--
D
----
L
Y
--
H
W
N
M
-------
G
---
Q
-----
P
G
Y
G
-
F
S
Y
H
-
K
-
D
---
M
T
I
---
S
-------
E
I
R
Y
F
G
------
T
G
V
---------------------------------------------------------
E
R
---------
Q
---------
L
N
L
G
---
G
-------
V
T
P
E
V
L
---
Q
K
Q
L
G
-
P
-
V
N
R
-
V
L
T
V
-------------
P
F
--
T
D
--
E
I
D
Y
V
Y
D
T
G
-------
R
-----
Y
E
L
---
H
F
V
I
G
T
D
Q
T
A
D
H
V
N
L
K
A
K
-------------------------
24
Fugue
85.89
98%
-75
* C3 *
4YGT
5
YJGB_BACSU
A:
[13-160]
-------------------------------------------------
N
Q
S
A
A
E
L
V
K
N
L
Y
N
T
A
Y
K
G
E
M
P
Q
-
Q
A
Q
G
------------
L
-
T
I
N
K
S
T
K
G
D
V
H
A
A
F
G
E
--
P
E
R
P
-------
V
G
G
D
---
N
R
---
F
--
D
----
L
Y
--
H
W
N
M
-------
G
---
Q
-----
P
G
Y
G
-
F
S
Y
H
-
K
-
D
---
M
T
I
---
S
-------
E
I
R
Y
F
G
------
T
G
V
---------------------------------------------------------
E
R
---------
Q
---------
L
N
L
G
---
G
-------
V
T
P
E
V
L
---
Q
K
Q
L
G
-
P
-
V
N
R
-
V
L
T
V
-------------
P
F
--
T
D
--
E
I
D
Y
V
Y
D
T
G
-------
R
-----
Y
E
L
---
H
F
V
I
G
T
D
Q
T
A
D
H
V
N
L
K
A
K
-------------------------
18
HHSearch
46.54
16%
-86
- C3 -
3D4E
1
?
A:
[42-87]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
---
G
-------
T
S
I
E
Q
L
---
K
Q
W
F
G
-
D
-
P
N
K
-
S
E
Q
R
-------------
N
A
GN
I
T
--
L
D
S
Y
T
W
V
K
D
-------
G
-----
A
V
I
---
N
A
Q
L
Y
K
-------------------------------------
27
Fugue
39.26
13%
-100
- C4 -
5D1R
7
Y1816_MYCTU
A:
[13-239]
A
R
E
Q
I
E
A
K
I
V
----
E
L
G
R
R
Q
L
L
D
H
G
A
A
G
L
S
L
R
A
I
A
R
N
L
-
G
M
V
S
S
A
V
Y
R
Y
V
S
S
R
D
E
L
L
T
L
L
L
V
D
A
Y
S
D
L
-
A
D
T
V
D
R
A
------------
R
D
D
T
V
A
D
S
W
S
D
D
V
I
A
I
A
R
--
A
V
R
G
-------
W
A
V
T
----
N
---
P
--
A
----
R
W
--
A
L
L
Y
-------
G
---
S
-----
P
V
P
G
-
Y
H
A
P
-
P
-
D
---
R
T
A
G
V
A
T
-------
R
V
V
G
A
F
------
F
D
A
---------------------------------------------------------
I
A
---------
A
---------
G
I
A
T
---
G
D
I
R
L
T
DD
V
A
P
Q
P
M
---
S
S
D
F
E
-
K
-
I
R
Q
-
E
F
G
F
-------------
P
G
--
D
D
--
R
V
V
T
K
C
F
L
L
-------
W
-----
A
G
V
---
V
G
A
I
S
L
E
V
F
G
Q
Y
G
A
D
M
L
T
D
P
G
V
V
F
D
A
Q
T
R
L
L
V
A
V
L
A
EHHHHHH
16
HHSearch
37.50
18%
-141
- C3 -
5D0O
-
?
E:
[49-100]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
-------
M
T
Q
Q
Q
V
---
A
Y
A
L
G
-
T
-
P
L
M
-
S
D
P
F
--------------
G
--
T
N
--
T
W
F
Y
V
F
R
Q
Q
P
G
HE
G
V
T
Q
-----
Q
T
L
---
T
L
T
F
N
S
S
G
V
----------------------------------
33
Fugue
37.22
20%
-43
- C1 -
1FIU
7
T2M4_NEIGO
A:
[1-286]
-
M
Q
P
L
F
T
Q
E
R
----
R
I
F
H
K
K
L
L
D
G
N
I
L
A
T
N
N
R
G
V
V
S
N
A
-
D
G
S
N
T
R
S
F
N
I
A
K
G
I
A
D
L
---
L
H
S
E
T
V
S
E
R
-
L
P
G
Q
T
S
G
------------
N
-
A
F
E
A
I
C
S
E
F
V
Q
S
A
F
E
K
L
Q
H
I
R
P
GD
W
N
V
K
Q
V
G
S
R
---
N
R
---
L
--
E
----
I
A
--
R
Y
Q
Q
-------
Y
---
A
-----
H
L
T
A
-
L
A
K
A
-
A
-
E
---
E
N
P
---
E
-------
L
A
A
A
L
G
------
S
D
Y
TITPD
I
I
V
T
R
N
L
I
A
D
A
E
I
N
R
NEFLVDENIATYASLRAGNG
N
M
P
L
L
H
A
S
I
S
C
K
WTIRS
D
R
---------
A
---------
Q
N
A
R
---
S
-------
E
G
L
N
L
V
---
R
N
R
K
G
-
R
-
L
P
H
-
I
V
V
V
T
AEPT
P
S
R
I
S
S
IA
L
G
--
T
G
--
E
I
D
C
V
Y
H
F
A
-------
L
-----
Y
E
L
---
E
Q
I
L
Q
S
L
N
Y
E
D
A
L
D
L
F
Y
I
M
V
N
G
KR
L
K
D
ISD
L
P
L
D
L
A
V------
29
Fugue
35.51
13%
-75
- C4 -
5CXI
1
?
A:
[18-198]
-
Q
R
E
R
R
K
R
I
L
----
D
A
T
M
A
I
A
S
K
G
G
Y
E
A
V
Q
M
R
A
V
A
D
R
A
-----
D
V
A
V
G
T
L
Y
R
Y
F
P
S
K
V
H
L
L
V
S
A
L
G
R
E
-
F
S
R
I
D
A
------------------------------
K
--
T
D
R
S
-------
A
A
G
A
---
T
P
---
F
--
Q
----
R
L
--
N
F
M
V
-------
G
---
K
-----
L
N
R
A
-
M
Q
R
N
-
P
-
L
---
L
T
E
---
A
-------
M
T
R
A
Y
V
F
ADA--
S
A
A
---------------------------------------------------------
S
E
---------
V
---------
D
Q
V
E
---
K
-------
L
I
D
S
M
F
---
A
R
A
M
A
----
N
G
-
E
P
T
E
-------------
D
Q
--
Y
H
--
I
A
R
V
I
S
D
V
W
-------
L
-----
S
N
L
---
L
A
W
L
T
R
R
A
S
A
T
D
V
S
K
R
L
D
L
A
V
R
L
L
IG-----------------
30
Fugue
35.42
20%
-40
- C5 -
4QRK
2
?
A:
[9-220]
-
K
P
K
E
E
I
K
I
V
E
PNG
A
E
K
T
K
L
N
L
N
F
G
V
G
K
L
N
I
S
G
N
E
E
K
L
M
K
G
K
F
I
Y
S
E
N
E
W
K
P
E
I
K
Y
E
V
K
D
K
D
G
E
L
E
I
S
-
Q
P
G
L
K
S
G
NVSLNN
K
R
N
E
W
N
I
-
N
L
N
E
K
I
P
T
E
I
K
L
S
L
G
T
---------------
G
E
---
F
K
---
A
--
D
----
L
S
--
K
I
N
L
-------
K
---
E
-----
L
N
V
G
M
G
V
G
K
-
V
-
D
---
L
D
I
---
S
GNYK
N
N
V
K
V
N
I
E
G
------
G
V
G
---------------------------------------------------------
E
A
---------
T
---------
V
Y
L
P
KS
I
G
-------
V
K
I
K
A
----
E
K
G
V
G
-
A
-
V
N
----
A
N
-------------
G
F
--
I
V
--
E
G
E
N
I
Y
K
N
S
-------
Q
-----
Y
G
K
SK
N
S
I
E
V
N
I
E
A
G
V
G
A
I
N
I
K
Q
K
-------------------------
6
HHSearch
35.41
12%
-88
- C3 -
3N4I
-
BLIP_STRCL
B:
[12-111]
----------------------------------------------------------------------------------------
I
-
Q
F
G
M
-
T
R
Q
Q
V
L
D
I
A
G
A
--
E
N
C
E
--------
T
G
G
---
S
F
---
G
--
D
----
S
I
--
H
C
R
G
-------
H
---
A
AGDYY
A
Y
A
T
-
F
G
F
T
-
S
-
A
AAD
A
K
V
---
D
-------
S
K
S
Q
E
K
LLAPS
A
P
T
L
---------------------------------------------------------
T
L
A
K
F
------
N
---------
Q
V
T
V
---
G
-------
M
T
R
A
Q
V
---
L
A
T
V
G
-
Q
-
G
S
C
-
T
T
----------------------------------------------------------------------------------------------
9
HHSearch
34.66
16%
-91
- C3 -
4IFA
5
?
A:
[53-137]
----------------------------------------------------------------------------------------
N
-
M
I
G
G
D
-
S
E
N
L
L
A
K
W
G
E
--
P
S
R
---------
I
E
P
---
S
A
---
Y
--
G
----
Y
E
--
W
W
V
Y
-------
N
QDL
A
-----
Q
Y
V
Q
-
F
G
V
A
-
E
-
R
---
K
-
V
---
V
-------
T
A
Y
V
A
G
------
E
Q
V
---------------------------------------------------------
K
V
---------
P
---------
P
Y
Y
I
---
N
-------
E
K
Y
E
D
V
---
Y
K
K
N
P
-
L
-----------------------------------------------------------------------------------------------------
14
HHSearch
34.54
17%
-95
- C3 -
4YGT
3
YJGB_BACSU
A:
[41-88]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
N
---
K
-------
S
T
K
G
D
V
---
H
A
A
F
G
-
E
-
P
E
R
-
P
V
---------------
G
G
---
D
--
N
R
F
D
L
Y
H
W
N
MG-----
Q
-----
P
G
Y
---
G
F
S
Y
H
K
D
M
T
I
---------------------------------
8
HHSearch
33.73
16%
-105
- C3 -
3GMV
1
?
X:
[12-107]
------------------------------------------------------------------------------------------
Q
F
G
-
M
T
F
D
E
V
W
E
I
G
G
G
--
E
A
A
C
-------
D
T
G
G
---
V
I
---
G
DS
I
----
L
C
FT
E
S
G
D
-------
Y
---
A
-----
P
Y
G
G
-
F
S
F
T
-
D
E
G
---
E
-
L
---
W
-------
S
K
R
N
E
Y
------
L
Y
K
---------------------------------------------------------
A
K
---------
T
PSVKLSHYN
R
T
A
L
---
G
-------
M
T
E
A
Q
L
---
W
A
A
V
P
K
D
-
S
C
V
-
S
-----------------------------------------------------------------------------------------------
5
HHSearch
33.72
15%
-35
- C3 -
3D4E
4
?
A:
[42-149]
--------------------------------------------------------------------------------------------
G
G
T
S
I
E
Q
L
K
Q
W
F
G
D
--
P
N
K
S
-------
E
Q
R
N
A
GN
I
T
---
L
--
D
----
S
Y
--
T
W
V
K
-------
D
---
G
-----
A
V
I
N
-
A
Q
L
Y
-
K
-
N
---
S
-
T
---
V
-------
A
R
S
I
S
N
------
F
S
F
---------------------------------------------------------
S
R
EAKIG
K
E
D
Y
D
---------
E
L
K
I
---
G
-------
E
S
Y
K
K
I
---
V
E
K
L
G
-
E
-
P
D
V
-
L
S
Q
S
-------------
M
S
--
S
D
K
E
E
M
Q
T
V
W
S
----------------------------------------------------------------
19
HHSearch
33.39
12%
-166
- C3 -
3N4I
-
BLIP_STRCL
B:
[15-61]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
-------
M
T
R
Q
Q
V
---
L
D
I
A
G
-
A
-
E
N
C
-
E
T
---------------
G
G
--
S
F
--
G
D
S
I
H
C
R
G
H
-------
A
AGDYY
A
Y
A
---
T
F
G
F
T
S
A
------------------------------------
28
Fugue
33.37
17%
-59
- C2 -
4DY5
3
?
A:
[1-111]
---------------------------------------------------------------------------------------------
T
G
K
N
V
N
V
E
F
D
K
G
Q
--
N
S
A
R
-------
Y
S
G
V
---
I
K
GY
D
Y
--
D
----
T
Y
--
N
F
Q
A
-----------
R
-----
K
G
Q
K
-
V
H
V
S
-
I
-
S
---
N
E
G
---
A
-------
D
T
Y
L
F
G
------
P
G
I
---------------------------------------------------------
S
D
---------
S
---------
V
D
L
S
---
R
-------
Y
S
S
E
L
D
GNG
Q
Y
T
L
P
-
A
-
S
G
K
Y
E
L
K
V
-------------
L
Q
--
T
R
--
N
E
A
R
K
N
K
A
K
-------
K
-----
Y
S
V
---
N
I
Q
I
K
--------------------------------------
10
HHSearch
33.14
14%
-113
- C3 -
5D0O
-
?
E:
[45-108]
---------------------------------------------------------------------------
K
------------
I
-
R
V
G
M
-
T
Q
Q
Q
V
A
Y
A
L
G
T
--
P
L
M
S
-------
D
P
F
G
---
T
N
---
T
--
W
----
F
Y
--
V
F
R
Q
Q
P
G
HE
G
V
T
---
Q
-----
Q
T
L
T
-
L
T
F
N
-
S
-
S
---
G
V
L
---
T
-------
N
I
D
N
K
P
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
HHSearch
33.04
15%
-98
- C3 -
4H0A
3
?
A:
[42-132]
---------------------------------------------------------------------------
G
------------
T
-
W
V
G
K
D
-
I
K
V
L
T
S
K
F
G
Q
--
A
D
R
---------
V
Y
P
---
F
R
---
D
--
G
Y
K
N
Y
V
F
--
K
-
D
K
-----------
N
-----
S
Y
Y
I
-
V
S
T
K
-
R
-
E
---
E
-
I
---
V
-------
S
V
Y
A
T
G
------
E
K
V
---------------------------------------------------------
N
V
---------
S
---------
P
L
K
I
---
G
-------
Q
H
S
A
E
I
---
F
N
H
T
S
-
I
N
P
E
P
-
S
F
----------------------------------------------------------------------------------------------
13
HHSearch
32.73
11%
-85
- C3 -
3GMX
1
?
B:
[13-105]
------------------------------------------------------------------------------------------
Q
F
G
-
M
D
R
T
L
V
W
Q
L
A
G
A
--
D
Q
S
C
-------
S
D
-
Q
---
V
E
---
R
--
I
----
I
C
---
Y
N
N
-------
P
---
D
HYG--
P
Q
G
H
-
F
F
F
N
A
A
-
D
---
K
-
L
---
I
-------
H
K
R
Q
M
E
------
L
F
P
---------------------------------------------------------
A
P
KPTMRLATY
N
---------
K
T
Q
T
---
G
-------
M
T
E
A
Q
F
---
W
A
A
V
P
S
D
-
T
C
S
-
A
-----------------------------------------------------------------------------------------------
15
HHSearch
32.61
8%
-63
- C3 -
4DM5
1
?
A:
[27-80]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
-------
M
S
Q
Q
E
V
---
L
R
I
G
G
-
T
-
P
S
G
-
T
Q
K
R
-------------
L
M
KP
G
S
--
C
N
S
Y
I
L
N
K
D
G
Q
-----
Q
-----
Q
P
F
---
Y
V
S
F
D
G
S
G
K
V
D
G
S
------------------------------