@TOME V2.3
(Nov 2016)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : bsu12200: (2016-06-19 )
MAAQTDYKKQVVGILLSLAFVLFVFSFSERHEKPLVEGKKQENWHTVVDKASVKIYGSRLVEENKLKQKLGHKQADSILTLLKLANEKHITL
Atome Classification :
(20 SA)
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------.........10.....--...20.......------.30.......-.40........50..----------...-----------...60.--...------------...--------.70.----------.......80........-90.----------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MAAQ
T
D
Y
K
K
Q
V
V
G
I
L
L
--
S
L
A
F
V
L
F
V
F
S
F
S
------
E
RHEKPLVEG-KKQENW
H
T
V
VDK
A
S
V
----------
K
I
Y
-----------
G
S
R
L
V
E
--
E
N
K
------------
L
K
Q
--------
K
LGH----------
K
Q
A
D
S
I
L
T
L
L
K
LANEKH-ITL----------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
PsiBlast_PDB
67.05
28%
-81
- C6 -
3FPN
-
?
A:
[162-231]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
H
A
K
T
L
E
D
I
-
R
K
Q
G
Y
V
R
V
R
I
D
R
E
M
R
----------
E
L
T
-----------
G
D
I
E
L
E
--
K
N
K
K
H
S
I
D
V
VV
D
R
I
I
I
K
D
--------
G
I
A
A
----------
R
L
A
D
S
L
E
T
A
L
K
L
A
D
G
K
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
65.29
28%
-75
- C6 -
3UWX
-
?
A:
[182-255]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
H
A
K
T
L
E
D
I
-
R
K
Q
G
Y
V
R
V
R
I
D
R
E
M
R
----------
E
L
T
-----------
G
D
I
E
L
E
--
K
N
K
K
H
S
I
D
V
V
V
D
R
I
I
I
K
D
--------
G
I
A
A
----------
R
L
A
D
S
L
E
T
A
L
K
L
A
D
G
K
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------
23
Fugue
63.07
19%
-77
- C7 -
2AI6
-
PHP14_HUMAN
A:
[1-125]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
A
V
A
D
L
A
L
I
P
D
V
D
I
D
S
D
G
V
F
K
Y
V
L
I
R
V
H
S
A
PRSGAP
A
A
E
S
K
E
I
V
R
G
-
Y
K
W
A
E
Y
H
A
D
I
Y
D
K
V
S
----------
G
D
M
Q
K
Q
G
C
D
C
E
CL
G
G
G
R
I
S
H
--
Q
S
Q
------------
D
K
K
I
H
V
Y
G
Y
S
M
A
Y
G
P
----------
A
Q
H
A
I
S
T
E
K
I
K
A
K
Y
P
D
Y
E
V
T
W
A
NDGY-----------------------------------------------------------------------------------------------------------------------------------------------------------------
21
Fugue
62.71
24%
-93
- C5 -
4PQG
2
?
A:
[6-511]
HH
H
M
T
I
Y
N
I
N
LGIGWASS
G
V
E
Y
A
Q
A
Y
R
A
G
V
F
R
K
L
N
L
S
S
K
F
I
F
TDMILADN
I
Q
H
L
T
A
N
I
GFDDNQVIWLYNHFTDIKIAPTSVT
V
D
D
V
L
A
Y
F
GGEES
H
R
E
K
N
GK
V
L
R
V
F
F
FDQD
K
F
V
T
C
Y
L
VDENKDLVQ
H
A
E
Y
V
F
KGNLI
R
K
D
Y
F
S
YTRY
C
S
E
Y
F
A
P
K
DN
V
A
V
L
Y
Q
R
T
F
Y
N
EDGTPV
Y
D
I
L
M
N
QGKEEVYHFKD
K
I
F
Y
G
K
Q
A
F
V
R
A
F
M
K
S
L
NLNKS
D
L
V
I
L
DRETGI
G
Q
V
V
F
E
E
A
Q
T
A
H
L
A
V
V
V
H
A
EHYSENATNED
Y
I
L
W
N
N
Y
Y
D
Y
Q
F
T
------
N
A
D
K
V
D
F
F
I
V
S
T
------
D
R
Q
N
E
V
L
Q
E
Q
F
A
K
Y
T
Q
H
Q
P
K
I
V
T
I
P
V
------------------------
G
S
I
------
D
S
------------
L
T
D
--------
S
S
Q
G
----------
R
K
P
F
S
L
I
T
A
S
R
L
A
K
E
K
H
-
I
D
W
L
V
K
A
V
I
E
A
H
K
E
L
PE
L
T
F
D
I
Y
G
S
G
GE
D
S
L
L
R
E
I
I
A
N
H
QAEDYIQLKGHAELSQIYSQYE
V
Y
L
T
ASTSEGFG
L
T
L
M
E
A
I
G
S
G
L
P
L
I
G
F
DVPY
G
N
Q
T
F
IEDGQN
G
Y
L
I
PSSSDHV
E
D
Q
I
K
Q
A
Y
A
A
K
I
C
Q
L
Y
Q
E
NR
L
E
A
M
R
A
Y
S
Y
Q
I
A
E
G
F
L
T
K
E
I
L
E
K
W
K
K
T
V
E
E
V
L
HD
25
Fugue
55.78
16%
-171
- C6 -
1E68
-
?
A:
[1-70]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
A
K
E
F
G
I
P
A
A
V
A
G
T
V
L
--
N
V
V
E
A
G
---
G
W
V
------
T
T
I
V
S
I
L
T
A
-----------
V
G
S
G
G
L
----------
S
L
L
-----------
A
A
A
G
R
E
S
I
K
A
Y
------------
L
K
K
--------
E
I
K
K
----------
K
G
K
R
A
V
I
A
W
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
20
Fugue
54.65
15%
-72
* C7 *
2NMM
4
PHP14_HUMAN
A:
[12-131]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
V
A
D
L
A
L
I
P
D
V
D
I
D
S
--
D
G
V
F
K
Y
V
L
I
R
V
H
S
-----
A
P
E
S
K
E
I
V
R
G
-
Y
K
W
A
E
Y
H
A
D
I
Y
D
K
V
S
G
D
M
Q
K
Q
G
C
D
C
E
C
L
-----------
G
G
G
R
I
S
--
H
Q
S
------------
Q
D
K
--------
K
I
H
V
Y
G
Y
S
MAYGPA
Q
H
A
I
S
T
E
K
I
K
A
K
Y
P
D
Y
E
-
V
T
W
A---------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
HHSearch
54.21
35%
-128
- C6 -
5BWA
-
OAZ1_HUMAN
B:
[59-100]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
I
N
W
R
T
V
L
S
G
G
S
L
----------
Y
I
E
-----------
I
P
G
G
------
A
------------
L
----------
P
E
G
S
----------
K
D
--
S
F
A
V
L
L
E
F
A
E
E
Q
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------
17
Fugue
53.97
20%
-128
* C6 *
1FX7
3
IDER_MYCTU
A:
[1-64]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
N
E
L
V
D
---------
T
--
T
E
M
Y
L
R
T
I
Y
D
L
E
------
E
E
G
V
T
P
L
-----------------
R
A
----------
R
I
A
-----------
E
R
L
D
Q
S
--
G
P
T
------------
V
S
Q
--------
T
V
S
R
----------
M
E
R
D
G
---
L
L
R
V
A
G
D
R
H
-
L
E
L
----------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
PsiBlast_PDB
51.49
32%
-117
- C6 -
3F5N
-
?
A:
[268-309]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
P
L
V
K
A
-
Q
L
V
E
E
W
A
N
S
V
K
K
Q
K
V
----------
E
V
Y
-----------
L
P
R
F
T
V
--
E
Q
E
------------
I
D
L
--------
K
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
HHSearch
49.77
33%
-135
- C6 -
4ZGY
-
B:
[43-82]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
I
N
W
R
T
V
L
S
G
G
S
L
----------
Y
I
E
-----------
I
P
G
G
A
--------------------
L
--------
P
E
G
S
----------
K
D
--
S
F
A
V
L
L
E
F
A
E
E
Q
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
PsiBlast_PDB
49.46
32%
-68
- C6 -
3F02
-
NEUS_HUMAN
A:
[268-304]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
P
L
V
K
A
-
Q
L
V
E
E
W
A
N
S
V
K
K
Q
K
V
----------
E
V
Y
-----------
L
P
R
F
T
V
--
E
Q
E
------------
I
D
L
--------
K
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
49.26
32%
-76
- C6 -
3FGQ
-
NEUS_HUMAN
A:
[265-306]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
P
L
V
K
A
-
Q
L
V
E
E
W
A
N
S
V
K
K
Q
K
V
----------
E
V
Y
-----------
L
P
R
F
T
V
--
E
Q
E
------------
I
D
L
--------
K
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
14
HHSearch
48.57
36%
-221
- C2 -
3QKS
-
MRE11_PYRFU
C:
[353-376]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
F
E
------------
L
K
I
I
D
------
I
L
----------------
D
F
D
Y
I
I
K
L
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
19
Fugue
40.94
22%
2
- C6 -
2I7U
-
?
A:
[1-62]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
K
K
L
R
E
E
A
A
-
K
L
F
E
E
W
K
K
L
A
E
E
A
A
K
----------
L
L
E
-----------
G
G
G
-
G
G
--
G
G
G
------------
E
L
M
--------
K
L
C
E
----------
E
A
A
K
K
A
E
E
L
F
K
L
A
E
E
R
L
-
K
K
L
----------------------------------------------------------------------------------------------------------------------------------------------------------------------
24
Fugue
38.79
10%
-5
- C6 -
2MH3
-
HES1_HUMAN
A:
[26-95]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
K
P
K
T
A
S
E
H
R
---------------------------
K
S
S
K
P
I
M
E
K
-
R
R
R
A
R
I
N
E
S
L
S
Q
L
K
T
----------
L
I
L
-----------
D
A
L
K
K
D
--
S
S
R
------------
H
S
K
--------
L
E
K
A
----------
D
I
L
E
M
T
V
K
H
L
R
N
L
Q
R
A
Q
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------
13
HHSearch
38.31
15%
-77
- C4 -
1W2T
-
BFRA_THEMA
A:
[377-396]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
T
N
R
I
R
A
F
L
D
S
C
S
V
----------
E
F
F
-----------
F
N
D
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
HHSearch
34.85
25%
14
- C6 -
1T6F
-
GEMI_HUMAN
A:
[2-25]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
-----------
Y
E
A
L
K
E
--
N
E
K
------------
L
H
K
--------
E
I
E
Q
----------
K
D
-
N
E
I
A
R
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
22
Fugue
33.78
18%
63
- C7 -
2JUB
-
IPI1_BPT4
A:
[1-76]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
T
L
T
S
E
V
I
K
A
N
K
G
---------------
R
E
------
G
K
P
M
I
S
L
V
D
G
-
E
E
I
K
G
T
V
Y
L
G
D
G
W
S
A
----------
K
K
D
-----------
G
A
T
I
V
I
--
S
P
A
------------
E
E
T
--------
A
L
F
K
----------
A
K
H
I
S
A
A
H
L
K
I
I
A
K
N
L
L
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
HHSearch
28.73
33%
-
- C1 -
4J6S
-
TY3H_HUMAN
E:
[16-22]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
------------
A
V
S
--------
E
L
D
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
15
HHSearch
28.34
29%
125
- C6 -
1LLM
-
EGR1_MOUSE (first)
C:
[74-87]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
E
N
E
--
V
A
R
------------
L
K
K
--------
L
V
G
E
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------